Wall clock time and date at job start Wed Apr 1 2020 02:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.49507 * 2 1 4 4 N 1.46497 * 109.47603 * 300.00026 * 3 2 1 5 5 C 1.34775 * 120.00146 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00076 * 4.70868 * 5 4 3 7 7 C 1.50699 * 119.99813 * 184.71408 * 5 4 3 8 8 C 1.50701 * 115.55102 * 294.31000 * 7 5 4 9 9 C 1.38670 * 120.41766 * 329.86180 * 8 7 5 10 10 C 1.38628 * 118.42205 * 180.02562 * 9 8 7 11 11 C 1.38229 * 119.15775 * 359.97438 * 10 9 8 12 12 N 1.31851 * 120.76520 * 0.02562 * 11 10 9 13 13 C 1.31885 * 121.72691 * 359.70029 * 12 11 10 14 14 C 1.53006 * 117.49810 * 148.64425 * 7 5 4 15 15 C 1.53004 * 117.50230 * 79.98482 * 7 5 4 16 16 C 1.53042 * 109.49534 * 120.09928 * 2 1 3 17 17 C 1.53036 * 109.53837 * 58.58718 * 16 2 1 18 18 C 1.53188 * 109.31470 * 61.36406 * 17 16 2 19 19 N 1.46931 * 108.77565 * 305.36602 * 18 17 16 20 20 C 1.36936 * 120.62770 * 233.63023 * 19 18 17 21 21 H 1.07998 * 120.00218 * 31.27430 * 20 19 18 22 22 C 1.38818 * 119.99925 * 211.27513 * 20 19 18 23 23 N 1.31620 * 119.99656 * 10.78825 * 22 20 19 24 24 Si 1.86795 * 120.00180 * 190.79302 * 22 20 19 25 25 H 1.48504 * 109.47240 * 59.99660 * 24 22 20 26 26 H 1.48507 * 109.47282 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46988 * 299.99728 * 24 22 20 28 28 C 1.46924 * 118.73780 * 53.60493 * 19 18 17 29 29 H 1.09000 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46852 * 60.06316 * 1 2 3 31 31 H 1.08992 * 109.47192 * 300.06019 * 1 2 3 32 32 H 1.09009 * 109.46815 * 60.00267 * 3 2 1 33 33 H 1.08994 * 109.46907 * 179.97438 * 3 2 1 34 34 H 0.96999 * 119.99499 * 359.97438 * 4 3 2 35 35 H 1.08001 * 120.79115 * 359.97314 * 9 8 7 36 36 H 1.07992 * 120.42214 * 179.97438 * 10 9 8 37 37 H 1.08004 * 119.61218 * 179.97438 * 11 10 9 38 38 H 1.08002 * 119.62141 * 180.31247 * 13 12 11 39 39 H 1.08994 * 117.49914 * 359.97438 * 14 7 5 40 40 H 1.09004 * 117.49709 * 145.02064 * 14 7 5 41 41 H 1.09000 * 117.49798 * 214.98091 * 15 7 5 42 42 H 1.08999 * 117.49530 * 359.97438 * 15 7 5 43 43 H 1.08997 * 109.45727 * 178.60387 * 16 2 1 44 44 H 1.08996 * 109.45705 * 298.56758 * 16 2 1 45 45 H 1.09001 * 109.50145 * 301.41351 * 17 16 2 46 46 H 1.09003 * 109.50123 * 181.31620 * 17 16 2 47 47 H 1.09000 * 109.59199 * 185.57598 * 18 17 16 48 48 H 1.08994 * 109.58903 * 65.15099 * 18 17 16 49 49 H 0.97002 * 119.99938 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.58113 * 186.60728 * 28 19 18 51 51 H 1.08996 * 109.58402 * 66.18371 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 7 1.5527 2.1331 -1.1961 5 6 1.8793 3.4232 -1.4096 6 8 2.6457 3.9871 -0.6576 7 6 1.2920 4.1649 -2.5826 8 6 1.7106 3.6671 -3.9420 9 6 2.9563 3.0854 -4.1237 10 6 3.2989 2.6424 -5.3918 11 6 2.3937 2.7935 -6.4255 12 7 1.2176 3.3515 -6.2159 13 6 0.8560 3.7796 -5.0220 14 6 1.0578 5.6684 -2.4223 15 6 -0.1319 4.7052 -2.4358 16 6 2.0408 -0.7235 1.2481 17 6 1.5030 -2.1562 1.2653 18 6 2.0140 -2.9040 0.0299 19 7 1.6516 -2.1378 -1.1703 20 6 0.9632 -2.7305 -2.1949 21 1 0.2632 -3.5260 -1.9862 22 6 1.1650 -2.3088 -3.5020 23 7 2.1611 -1.4964 -3.7849 24 14 0.0230 -2.8944 -4.8592 25 1 -1.3667 -2.4680 -4.5552 26 1 0.4493 -2.3046 -6.1538 27 1 0.0780 -4.3757 -4.9476 28 6 2.0413 -0.7234 -1.2498 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5129 -0.8906 31 1 -0.3633 0.5147 0.8894 32 1 1.6775 1.9562 0.8901 33 1 3.1306 1.4417 0.0005 34 1 0.9951 1.6619 -1.8348 35 1 3.6435 2.9809 -3.2972 36 1 4.2609 2.1849 -5.5699 37 1 2.6532 2.4513 -7.4165 38 1 -0.1178 4.2270 -4.8877 39 1 1.3280 6.1209 -1.4682 40 1 1.2060 6.2973 -3.3001 41 1 -0.7658 4.7008 -3.3226 42 1 -0.6441 4.5238 -1.4909 43 1 3.1305 -0.7449 1.2350 44 1 1.6987 -0.1965 2.1388 45 1 0.4133 -2.1359 1.2534 46 1 1.8480 -2.6636 2.1662 47 1 1.5555 -3.8919 -0.0150 48 1 3.0979 -3.0043 0.0858 49 1 2.3020 -1.2014 -4.6982 50 1 1.6007 -0.2725 -2.1390 51 1 3.1275 -0.6459 -1.2982 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324956349.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:19 Heat of formation + Delta-G solvation = 24.467541 kcal Electronic energy + Delta-G solvation = -31845.839204 eV Core-core repulsion = 27938.509468 eV Total energy + Delta-G solvation = -3907.329736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.86824 -40.73721 -39.86718 -37.68056 -36.29855 -34.88475 -33.45490 -32.90787 -31.81169 -31.60430 -28.12653 -27.64220 -27.10370 -25.62030 -24.67960 -23.98916 -23.37854 -23.15272 -21.98183 -20.82700 -19.51493 -18.69938 -18.50506 -17.96576 -17.17885 -17.05913 -16.71149 -16.52249 -15.96582 -15.73138 -15.48760 -15.36376 -15.13654 -14.96338 -14.86854 -14.74185 -14.34109 -14.05704 -13.85865 -13.76580 -13.70316 -13.12918 -13.02152 -12.99356 -12.70698 -12.60568 -12.40702 -12.30230 -12.20639 -12.06776 -11.88125 -11.74251 -11.72103 -11.40102 -11.23659 -10.99071 -10.97204 -10.70606 -10.51044 -10.39791 -10.07741 -9.80289 -8.55319 -7.81927 -5.31618 0.07058 0.26920 1.45373 1.46757 1.47239 1.52486 2.12357 2.50803 2.57811 2.98991 3.29860 3.31709 3.57380 3.60049 3.67186 3.73321 3.88230 3.94006 3.94991 4.01319 4.04565 4.04786 4.28471 4.36166 4.45643 4.51571 4.55388 4.62208 4.69034 4.73993 4.75953 4.80366 4.85952 4.92857 4.99575 5.04352 5.10952 5.11452 5.15244 5.17482 5.25161 5.29498 5.32937 5.40732 5.47489 5.51490 5.64445 5.68983 5.73040 5.80224 6.44758 6.47630 6.94825 7.13644 7.20825 7.90149 8.43799 9.21438 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008947 B = 0.005176 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.886691 B = 5407.902483 C = 7553.192553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.092 4.092 3 C 0.141 3.859 4 N -0.706 5.706 5 C 0.552 3.448 6 O -0.577 6.577 7 C -0.142 4.142 8 C -0.093 4.093 9 C -0.076 4.076 10 C -0.162 4.162 11 C 0.086 3.914 12 N -0.499 5.499 13 C 0.096 3.904 14 C -0.123 4.123 15 C -0.134 4.134 16 C -0.094 4.094 17 C -0.123 4.123 18 C 0.137 3.863 19 N -0.603 5.603 20 C -0.257 4.257 21 H 0.061 0.939 22 C -0.037 4.037 23 N -0.922 5.922 24 Si 0.952 3.048 25 H -0.278 1.278 26 H -0.298 1.298 27 H -0.280 1.280 28 C 0.202 3.798 29 H 0.054 0.946 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.405 0.595 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.112 0.888 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.050 0.950 48 H 0.006 0.994 49 H 0.247 0.753 50 H 0.064 0.936 51 H -0.022 1.022 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 11.661 3.656 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C 0.017 3.983 4 N -0.356 5.356 5 C 0.339 3.661 6 O -0.457 6.457 7 C -0.145 4.145 8 C -0.095 4.095 9 C -0.103 4.103 10 C -0.182 4.182 11 C -0.070 4.070 12 N -0.207 5.207 13 C -0.060 4.060 14 C -0.160 4.160 15 C -0.170 4.170 16 C -0.132 4.132 17 C -0.162 4.162 18 C 0.011 3.989 19 N -0.326 5.326 20 C -0.388 4.388 21 H 0.078 0.922 22 C -0.233 4.233 23 N -0.567 5.567 24 Si 0.781 3.219 25 H -0.204 1.204 26 H -0.224 1.224 27 H -0.206 1.206 28 C 0.076 3.924 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.241 0.759 35 H 0.133 0.867 36 H 0.165 0.835 37 H 0.193 0.807 38 H 0.199 0.801 39 H 0.122 0.878 40 H 0.139 0.861 41 H 0.149 0.851 42 H 0.130 0.870 43 H 0.068 0.932 44 H 0.097 0.903 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.069 0.931 48 H 0.024 0.976 49 H 0.056 0.944 50 H 0.083 0.917 51 H -0.004 1.004 Dipole moment (debyes) X Y Z Total from point charges -3.866 12.151 3.340 13.182 hybrid contribution 0.632 -1.142 -0.613 1.442 sum -3.234 11.009 2.728 11.794 Atomic orbital electron populations 1.21621 0.93497 1.01796 1.00496 1.21361 0.97067 0.92714 0.98255 1.21315 0.97980 0.91773 0.87193 1.46051 1.52656 1.11390 1.25506 1.19646 0.80042 0.81652 0.84767 1.90649 1.36602 1.68842 1.49609 1.19976 1.04776 0.99502 0.90284 1.19775 0.95029 1.00577 0.94142 1.21448 0.95960 0.95255 0.97605 1.22301 1.02383 1.00163 0.93344 1.23117 0.88922 0.94556 1.00394 1.67736 1.18173 1.10466 1.24340 1.22969 0.99809 0.96385 0.86870 1.23165 0.99860 0.88050 1.04895 1.23385 0.88221 0.99692 1.05735 1.21367 0.99623 0.95911 0.96317 1.21922 1.00966 0.95621 0.97701 1.21095 0.95837 0.94610 0.87323 1.44158 1.65195 1.06428 1.16848 1.19326 1.15964 1.17411 0.86076 0.92178 1.25679 0.98173 1.00587 0.98853 1.70111 1.30290 1.37968 1.18367 0.85589 0.79277 0.78015 0.79032 1.20409 1.22436 1.20640 1.20502 0.93515 0.83724 0.94671 0.92699 0.94325 0.91686 0.90580 0.93511 0.75903 0.86725 0.83495 0.80679 0.80129 0.87817 0.86147 0.85077 0.86969 0.93205 0.90265 0.91717 0.90273 0.93125 0.97650 0.94405 0.91728 1.00429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.70 7.81 71.98 0.56 -3.14 16 2 C -0.09 -3.11 0.53 -52.10 -0.03 -3.14 16 3 C 0.14 4.55 4.57 86.38 0.40 4.94 16 4 N -0.71 -22.64 4.99 -463.07 -2.31 -24.95 16 5 C 0.55 17.51 5.99 87.66 0.53 18.04 16 6 O -0.58 -21.59 16.71 -3.04 -0.05 -21.64 16 7 C -0.14 -3.58 2.37 -53.67 -0.13 -3.70 16 8 C -0.09 -2.58 5.49 -19.77 -0.11 -2.69 16 9 C -0.08 -2.38 9.44 22.47 0.21 -2.17 16 10 C -0.16 -4.71 10.11 22.36 0.23 -4.48 16 11 C 0.09 2.41 11.18 84.69 0.95 3.36 16 12 N -0.50 -14.61 10.36 -195.84 -2.03 -16.64 16 13 C 0.10 2.51 10.53 84.67 0.89 3.40 16 14 C -0.12 -2.39 9.74 30.62 0.30 -2.09 16 15 C -0.13 -2.35 9.58 30.62 0.29 -2.05 16 16 C -0.09 -2.82 4.71 30.62 0.14 -2.68 16 17 C -0.12 -3.79 5.74 30.67 0.18 -3.62 16 18 C 0.14 5.47 6.52 86.36 0.56 6.03 16 19 N -0.60 -28.63 2.42 -699.11 -1.70 -30.32 16 20 C -0.26 -13.49 9.58 84.04 0.81 -12.68 16 21 H 0.06 3.12 7.85 -2.91 -0.02 3.09 16 22 C -0.04 -1.95 5.05 84.86 0.43 -1.52 16 23 N -0.92 -51.55 11.05 21.65 0.24 -51.31 16 24 Si 0.95 43.78 29.57 68.60 2.03 45.81 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 28 C 0.20 9.05 3.67 86.36 0.32 9.36 16 29 H 0.05 1.94 5.97 -2.39 -0.01 1.93 16 30 H 0.04 1.25 6.87 -2.39 -0.02 1.24 16 31 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.40 13.65 6.22 -92.71 -0.58 13.08 16 35 H 0.11 3.85 7.44 -2.91 -0.02 3.82 16 36 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 37 H 0.18 3.91 8.06 -2.91 -0.02 3.89 16 38 H 0.18 3.46 5.96 -2.91 -0.02 3.44 16 39 H 0.10 2.15 8.00 -2.39 -0.02 2.13 16 40 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 41 H 0.13 1.71 6.13 -2.39 -0.01 1.69 16 42 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.06 1.99 6.33 -2.39 -0.02 1.98 16 46 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.05 1.99 7.93 -2.39 -0.02 1.98 16 48 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 49 H 0.25 13.65 8.31 -92.71 -0.77 12.88 16 50 H 0.06 3.21 5.00 -2.39 -0.01 3.20 16 51 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 Total: -1.00 -66.10 398.61 3.06 -63.03 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: 0.36 Total: 34.85 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 6.52 Total: 1.16 kcal Atomic # 7 Polarization: -117.42 SS G_CDS: -5.80 Total: -123.22 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -66.10 3.06 -63.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324956349.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.502 kcal (2) G-P(sol) polarization free energy of solvation -66.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds