Wall clock time and date at job start Wed Apr 1 2020 02:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47890 * 111.00143 * 2 1 4 4 C 1.54606 * 102.63556 * 149.30799 * 3 2 1 5 5 C 1.51615 * 102.73584 * 334.45696 * 4 3 2 6 6 C 1.37426 * 131.46302 * 196.05599 * 5 4 3 7 7 C 1.39804 * 119.95994 * 179.63800 * 6 5 4 8 8 C 1.47519 * 120.21561 * 180.02562 * 7 6 5 9 9 O 1.21596 * 119.99665 * 10.98682 * 8 7 6 10 10 N 1.34770 * 120.00310 * 190.99297 * 8 7 6 11 11 C 1.47491 * 127.03429 * 6.56770 * 10 8 7 12 12 C 1.53995 * 107.08220 * 154.52323 * 11 10 8 13 13 C 1.54620 * 105.04939 * 1.30356 * 12 11 10 14 14 C 1.53004 * 110.73770 * 263.51556 * 13 12 11 15 15 C 1.52995 * 110.74021 * 140.18643 * 13 12 11 16 16 N 1.46497 * 109.47083 * 179.97438 * 15 13 12 17 17 C 1.36936 * 120.00130 * 180.02562 * 16 15 13 18 18 H 1.08003 * 120.00036 * 0.02562 * 17 16 15 19 19 C 1.38809 * 120.00446 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99707 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00473 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46572 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46671 * 120.00115 * 21 19 17 24 24 H 1.48489 * 109.47502 * 240.00304 * 21 19 17 25 25 C 1.48114 * 127.03398 * 186.25641 * 10 8 7 26 26 C 1.39821 * 119.57315 * 359.72306 * 7 6 5 27 27 C 1.37389 * 120.11969 * 0.66492 * 26 7 6 28 28 C 1.39303 * 107.88401 * 15.92639 * 5 4 3 29 29 H 1.08997 * 109.47103 * 299.74128 * 1 2 3 30 30 H 1.09000 * 109.46984 * 59.74268 * 1 2 3 31 31 H 1.09002 * 109.46896 * 179.74015 * 1 2 3 32 32 H 1.09002 * 110.77196 * 31.02576 * 3 2 1 33 33 H 1.09002 * 110.77402 * 267.59974 * 3 2 1 34 34 H 1.08994 * 110.75659 * 216.13756 * 4 3 2 35 35 H 1.09000 * 110.75060 * 92.76842 * 4 3 2 36 36 H 1.08002 * 120.01612 * 359.65512 * 6 5 4 37 37 H 1.08999 * 109.90722 * 273.88417 * 11 10 8 38 38 H 1.09003 * 109.91113 * 34.96466 * 11 10 8 39 39 H 1.09003 * 110.33144 * 120.20108 * 12 11 10 40 40 H 1.09006 * 110.32296 * 242.30795 * 12 11 10 41 41 H 1.08997 * 109.46958 * 59.99853 * 14 13 12 42 42 H 1.08997 * 109.46355 * 179.97438 * 14 13 12 43 43 H 1.09000 * 109.46955 * 299.99564 * 14 13 12 44 44 H 1.08996 * 109.47686 * 300.00737 * 15 13 12 45 45 H 1.09011 * 109.46801 * 60.00275 * 15 13 12 46 46 H 0.96999 * 119.99895 * 0.02562 * 16 15 13 47 47 H 0.97000 * 120.00352 * 180.02562 * 20 19 17 48 48 H 1.08998 * 110.66358 * 337.77013 * 25 10 8 49 49 H 1.09008 * 110.66448 * 100.87944 * 25 10 8 50 50 H 1.07991 * 119.93878 * 180.38517 * 26 7 6 51 51 H 1.07998 * 119.80288 * 179.72031 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 3.3313 1.2315 0.7700 5 6 3.0832 0.0104 1.6338 6 6 3.7442 -0.4731 2.7374 7 6 3.2962 -1.6397 3.3641 8 6 4.0011 -2.1634 4.5494 9 8 4.8439 -1.4850 5.1045 10 7 3.7112 -3.3937 5.0171 11 6 2.8243 -4.3943 4.3947 12 6 3.2893 -5.7781 4.8849 13 6 4.4670 -5.4893 5.8442 14 6 5.8055 -5.6277 5.1159 15 6 4.4130 -6.4137 7.0621 16 7 5.5395 -6.1172 7.9505 17 6 5.6995 -6.8238 9.1125 18 1 4.9954 -7.6000 9.3739 19 6 6.7665 -6.5426 9.9546 20 7 7.6243 -5.5964 9.6364 21 14 6.9844 -7.5060 11.5402 22 1 5.8939 -8.5062 11.6653 23 1 8.2953 -8.2035 11.5193 24 1 6.9375 -6.5748 12.6958 25 6 4.2230 -4.0198 6.2579 26 6 2.1719 -2.3036 2.8639 27 6 1.5212 -1.8184 1.7553 28 6 1.9688 -0.6536 1.1260 29 1 -0.3633 0.5098 0.8923 30 1 -0.3633 0.5178 -0.8877 31 1 -0.3633 -1.0277 -0.0047 32 1 1.3222 2.0546 0.5253 33 1 2.1774 1.7263 -1.0183 34 1 3.5211 2.1094 1.3874 35 1 4.1578 1.0561 0.0814 36 1 4.6090 0.0482 3.1206 37 1 1.7933 -4.2188 4.7019 38 1 2.9030 -4.3360 3.3091 39 1 2.4825 -6.2823 5.4169 40 1 3.6243 -6.3849 4.0435 41 1 5.8438 -4.9193 4.2884 42 1 6.6198 -5.4196 5.8099 43 1 5.9063 -6.6423 4.7307 44 1 3.4766 -6.2557 7.5970 45 1 4.4731 -7.4513 6.7336 46 1 6.1721 -5.4204 7.7156 47 1 8.3702 -5.4000 10.2246 48 1 5.1552 -3.5491 6.5701 49 1 3.4783 -3.9646 7.0521 50 1 1.8170 -3.2018 3.3470 51 1 0.6560 -2.3378 1.3706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484120421.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:12 Heat of formation + Delta-G solvation = 38.497586 kcal Electronic energy + Delta-G solvation = -29971.556780 eV Core-core repulsion = 26064.835432 eV Total energy + Delta-G solvation = -3906.721348 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.22852 -40.11886 -38.06449 -36.62788 -34.85968 -33.30435 -32.62345 -30.61656 -30.22434 -29.70535 -28.97137 -26.79274 -26.20677 -25.46671 -23.97588 -23.35071 -22.34831 -21.59829 -21.32475 -19.59366 -18.78382 -17.43297 -16.93205 -16.84594 -16.36775 -15.99794 -15.72653 -15.43271 -14.61083 -14.48703 -14.41267 -14.13825 -13.88734 -13.78271 -13.57126 -13.54425 -13.19752 -13.05181 -12.96717 -12.81213 -12.45822 -12.32355 -12.15174 -12.06943 -11.91475 -11.83251 -11.52803 -11.42306 -11.02660 -10.95992 -10.82202 -10.44903 -10.40891 -10.29656 -10.23243 -9.91282 -9.78252 -9.59789 -9.13570 -8.85435 -8.54645 -8.08698 -6.88414 -5.72477 -3.01457 0.67015 1.11677 2.73761 3.02600 3.26569 3.45962 3.51075 3.53763 3.69282 4.12207 4.19565 4.40617 4.57170 4.60501 4.61739 4.68750 4.75679 4.83263 4.90277 4.95717 4.98875 5.08644 5.14450 5.17750 5.29957 5.31523 5.37795 5.45151 5.49804 5.53293 5.62464 5.68696 5.77329 5.81996 5.90524 5.97728 6.02975 6.08208 6.13016 6.18835 6.21703 6.24377 6.34521 6.43272 6.50121 6.58149 6.69608 6.79448 6.79629 6.89261 7.66335 7.73551 8.27862 8.45952 9.57241 10.14959 10.49257 11.50221 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027424 B = 0.002090 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.768626 B =13393.898314 C =14012.857324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.481 5.481 3 C 0.045 3.955 4 C -0.083 4.083 5 C -0.154 4.154 6 C -0.019 4.019 7 C -0.151 4.151 8 C 0.577 3.423 9 O -0.537 6.537 10 N -0.614 5.614 11 C 0.092 3.908 12 C -0.126 4.126 13 C -0.078 4.078 14 C -0.129 4.129 15 C 0.169 3.831 16 N -0.731 5.731 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.120 3.880 26 C -0.081 4.081 27 C -0.148 4.148 28 C 0.117 3.883 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.135 0.865 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.021 0.979 45 H 0.023 0.977 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.091 0.909 49 H 0.076 0.924 50 H 0.154 0.846 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.839 11.112 -23.151 30.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.194 5.194 3 C -0.080 4.080 4 C -0.120 4.120 5 C -0.157 4.157 6 C -0.038 4.038 7 C -0.155 4.155 8 C 0.367 3.633 9 O -0.415 6.415 10 N -0.348 5.348 11 C -0.031 4.031 12 C -0.165 4.165 13 C -0.080 4.080 14 C -0.187 4.187 15 C 0.041 3.959 16 N -0.376 5.376 17 C -0.371 4.371 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.580 5.580 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.002 4.002 26 C -0.100 4.100 27 C -0.169 4.169 28 C 0.017 3.983 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.081 0.919 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.108 0.892 36 H 0.153 0.847 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.039 0.961 45 H 0.041 0.959 46 H 0.220 0.780 47 H 0.065 0.935 48 H 0.109 0.891 49 H 0.094 0.906 50 H 0.171 0.829 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.301 11.255 -23.289 30.574 hybrid contribution 0.057 -0.048 1.320 1.322 sum -16.244 11.207 -21.970 29.532 Atomic orbital electron populations 1.22577 0.85321 1.03363 1.01757 1.60232 1.09407 1.14778 1.34954 1.23311 0.95426 0.87502 1.01808 1.21303 0.97746 0.95846 0.97140 1.20380 0.98634 0.99152 0.97566 1.20435 0.97995 0.93312 0.92107 1.19715 0.99004 0.98203 0.98593 1.17724 0.82099 0.80040 0.83445 1.90811 1.33143 1.57594 1.59960 1.48656 1.47238 1.13750 1.25109 1.22519 0.93700 0.88582 0.98274 1.22636 0.98675 0.95458 0.99687 1.21790 0.95172 0.94859 0.96155 1.21703 0.96514 1.00761 0.99701 1.20624 0.91904 0.94964 0.88397 1.42424 1.28905 1.44024 1.22256 1.19248 1.07859 1.13115 0.96833 0.91167 1.24748 0.97930 0.99188 0.99142 1.69671 1.16432 1.33509 1.38343 0.86131 0.77405 0.79070 0.83653 1.20608 1.21942 1.21922 1.22541 1.00736 0.91702 0.85193 1.22023 0.93741 0.99357 0.94876 1.20381 1.02422 0.96535 0.97536 1.19864 0.95300 0.94887 0.88210 0.94036 0.90443 0.90455 0.91886 0.88492 0.89685 0.89209 0.84683 0.91186 0.90057 0.90138 0.90424 0.93670 0.91112 0.92736 0.96111 0.95891 0.77992 0.93538 0.89105 0.90611 0.82891 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.14 60.06 0.55 0.64 16 2 N -0.48 -3.87 5.29 -176.82 -0.93 -4.80 16 3 C 0.05 0.28 6.91 -2.43 -0.02 0.26 16 4 C -0.08 -0.62 7.04 -26.59 -0.19 -0.80 16 5 C -0.15 -1.61 6.21 -104.07 -0.65 -2.26 16 6 C -0.02 -0.24 9.57 -39.29 -0.38 -0.61 16 7 C -0.15 -1.97 5.85 -104.94 -0.61 -2.59 16 8 C 0.58 9.34 7.79 -12.48 -0.10 9.24 16 9 O -0.54 -10.83 16.60 5.28 0.09 -10.74 16 10 N -0.61 -9.00 3.19 -171.21 -0.55 -9.54 16 11 C 0.09 0.98 4.98 -2.98 -0.01 0.96 16 12 C -0.13 -1.45 6.09 -25.36 -0.15 -1.60 16 13 C -0.08 -1.24 0.65 -152.82 -0.10 -1.34 16 14 C -0.13 -2.15 8.31 37.16 0.31 -1.84 16 15 C 0.17 3.28 5.11 -4.05 -0.02 3.26 16 16 N -0.73 -18.26 5.16 -59.91 -0.31 -18.57 16 17 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 18 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 21 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 C 0.12 2.03 5.68 -2.32 -0.01 2.02 16 26 C -0.08 -0.83 8.28 -39.30 -0.33 -1.16 16 27 C -0.15 -1.36 9.50 -39.32 -0.37 -1.73 16 28 C 0.12 1.14 5.95 -83.42 -0.50 0.65 16 29 H 0.04 0.23 8.10 -51.93 -0.42 -0.19 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.39 7.28 -51.93 -0.38 0.02 16 32 H 0.06 0.34 7.84 -51.93 -0.41 -0.07 16 33 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.14 1.71 7.69 -52.49 -0.40 1.31 16 37 H 0.07 0.61 7.32 -51.93 -0.38 0.23 16 38 H 0.08 0.74 6.09 -51.93 -0.32 0.43 16 39 H 0.08 0.83 7.85 -51.93 -0.41 0.42 16 40 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 41 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 42 H 0.07 1.39 6.69 -51.93 -0.35 1.05 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.02 0.40 8.10 -51.93 -0.42 -0.02 16 45 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 46 H 0.39 10.24 6.21 -40.82 -0.25 9.99 16 47 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 48 H 0.09 1.84 7.71 -51.93 -0.40 1.44 16 49 H 0.08 1.29 8.01 -51.92 -0.42 0.88 16 50 H 0.15 1.29 3.60 -52.49 -0.19 1.10 16 51 H 0.13 0.87 7.34 -52.49 -0.39 0.48 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -34.36 397.48 -10.87 -45.23 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -8.04 Total: 6.89 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -2.82 Total: -4.23 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -1.07 Total: -60.73 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.36 -10.87 -45.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484120421.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.731 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds