Wall clock time and date at job start Wed Apr 1 2020 02:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.49779 * 2 1 4 4 N 1.46497 * 109.46990 * 60.06781 * 3 2 1 5 5 C 1.34779 * 119.99611 * 179.97438 * 4 3 2 6 6 O 1.21511 * 120.00360 * 359.97438 * 5 4 3 7 7 C 1.48154 * 119.99730 * 179.97438 * 5 4 3 8 8 C 1.39837 * 120.92231 * 0.02562 * 7 5 4 9 9 C 1.38127 * 119.00083 * 180.02562 * 8 7 5 10 10 N 1.31824 * 120.89793 * 359.97438 * 9 8 7 11 11 C 1.31798 * 122.05308 * 0.02562 * 10 9 8 12 12 C 1.50699 * 119.55415 * 179.97438 * 11 10 9 13 13 C 1.53000 * 117.49724 * 163.74657 * 12 11 10 14 14 C 1.53001 * 117.49633 * 95.09138 * 12 11 10 15 15 C 1.38173 * 120.88843 * 359.72120 * 11 10 9 16 16 C 1.53042 * 109.49465 * 239.90301 * 2 1 3 17 17 C 1.53035 * 109.53907 * 301.41344 * 16 2 1 18 18 C 1.53188 * 109.31493 * 298.63786 * 17 16 2 19 19 N 1.46929 * 108.77668 * 54.63306 * 18 17 16 20 20 C 1.36943 * 120.63049 * 126.39239 * 19 18 17 21 21 H 1.08003 * 119.99492 * 331.82798 * 20 19 18 22 22 C 1.38808 * 120.00015 * 151.82501 * 20 19 18 23 23 N 1.31621 * 119.99770 * 343.07762 * 22 20 19 24 24 Si 1.86794 * 120.00115 * 163.07695 * 22 20 19 25 25 H 1.48504 * 109.47166 * 90.00191 * 24 22 20 26 26 H 1.48503 * 109.47383 * 210.00354 * 24 22 20 27 27 H 1.48504 * 109.46902 * 330.00232 * 24 22 20 28 28 C 1.46922 * 118.73999 * 306.39355 * 19 18 17 29 29 H 1.09008 * 109.46923 * 299.93665 * 1 2 3 30 30 H 1.09001 * 109.47115 * 59.93222 * 1 2 3 31 31 H 1.08995 * 109.47517 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46714 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47248 * 300.06475 * 3 2 1 34 34 H 0.96992 * 120.00243 * 359.97438 * 4 3 2 35 35 H 1.08005 * 120.49954 * 359.97438 * 8 7 5 36 36 H 1.07998 * 119.54833 * 179.97438 * 9 8 7 37 37 H 1.09001 * 115.55220 * 309.41443 * 12 11 10 38 38 H 1.09005 * 117.49746 * 0.02562 * 13 12 11 39 39 H 1.08999 * 117.49856 * 145.02006 * 13 12 11 40 40 H 1.09004 * 117.49617 * 214.97764 * 14 12 11 41 41 H 1.08997 * 117.50195 * 359.97438 * 14 12 11 42 42 H 1.08006 * 120.49548 * 180.28678 * 15 11 10 43 43 H 1.08993 * 109.45964 * 61.43784 * 16 2 1 44 44 H 1.09003 * 109.46013 * 181.39626 * 16 2 1 45 45 H 1.08999 * 109.49760 * 58.59069 * 17 16 2 46 46 H 1.08997 * 109.50372 * 178.68274 * 17 16 2 47 47 H 1.08998 * 109.58849 * 174.42173 * 18 17 16 48 48 H 1.09000 * 109.58566 * 294.84366 * 18 17 16 49 49 H 0.97000 * 119.99707 * 179.97438 * 23 22 20 50 50 H 1.08997 * 109.58385 * 293.82159 * 28 19 18 51 51 H 1.08998 * 109.59065 * 173.39437 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 7 1.5540 2.1326 1.1970 5 6 1.8809 3.4225 1.4106 6 8 2.5796 4.0128 0.6107 7 6 1.3882 4.1209 2.6208 8 6 0.5835 3.4601 3.5542 9 6 0.1458 4.1495 4.6682 10 7 0.4774 5.4114 4.8569 11 6 1.2335 6.0712 4.0025 12 6 1.5776 7.5130 4.2738 13 6 2.7397 8.1221 3.4868 14 6 2.9067 7.8024 4.9743 15 6 1.7192 5.4571 2.8640 16 6 2.0407 -0.7235 -1.2482 17 6 1.5029 -2.1561 -1.2654 18 6 2.0139 -2.9040 -0.0300 19 7 1.6514 -2.1378 1.1701 20 6 0.9634 -2.7307 2.1950 21 1 0.3014 -3.5597 1.9925 22 6 1.1169 -2.2663 3.4941 23 7 2.1431 -1.5022 3.8028 24 14 -0.1330 -2.7258 4.8040 25 1 0.2873 -3.9853 5.4692 26 1 -0.2168 -1.6380 5.8116 27 1 -1.4632 -2.9193 4.1728 28 6 2.0412 -0.7235 1.2498 29 1 -0.3633 0.5129 0.8906 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1307 1.4417 -0.0005 33 1 1.6766 1.9566 -0.8894 34 1 0.9965 1.6613 1.8357 35 1 0.3076 2.4265 3.4058 36 1 -0.4764 3.6479 5.3946 37 1 0.7335 8.1618 4.5079 38 1 3.2551 7.4800 2.7724 39 1 2.6603 9.1717 3.2035 40 1 2.9371 8.6417 5.6691 41 1 3.5320 6.9498 5.2393 42 1 2.3422 6.0025 2.1704 43 1 1.6987 -0.1964 -2.1388 44 1 3.1305 -0.7448 -1.2351 45 1 0.4132 -2.1358 -1.2535 46 1 1.8479 -2.6635 -2.1663 47 1 1.5552 -3.8918 0.0148 48 1 3.0978 -3.0044 -0.0860 49 1 2.2502 -1.1773 4.7105 50 1 3.1274 -0.6461 1.2982 51 1 1.6007 -0.2725 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484162275.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:47 Heat of formation + Delta-G solvation = 39.672883 kcal Electronic energy + Delta-G solvation = -30655.484290 eV Core-core repulsion = 26748.813907 eV Total energy + Delta-G solvation = -3906.670383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.79788 -39.47564 -38.28836 -37.11657 -34.90767 -33.39685 -32.72055 -31.39030 -30.88357 -29.93526 -26.75858 -26.06894 -25.37930 -24.82090 -23.94398 -22.55522 -22.20841 -21.65400 -20.61328 -19.99123 -18.34654 -17.63261 -16.87305 -16.72654 -15.86870 -15.72387 -15.39832 -15.24669 -15.03461 -14.72677 -14.33785 -14.12699 -13.96982 -13.83158 -13.58610 -13.44986 -13.22452 -12.81718 -12.44441 -12.35030 -12.24930 -11.91837 -11.70055 -11.53465 -11.37704 -11.02931 -10.95405 -10.91109 -10.71537 -10.70035 -10.46869 -10.25987 -10.21511 -10.13368 -9.91852 -9.88428 -9.67813 -9.46849 -9.44504 -9.03853 -8.83461 -8.55661 -6.72875 -5.87266 -3.29584 0.67229 0.95849 2.92227 3.21980 3.29162 3.37931 3.39457 3.48123 3.77235 4.01507 4.41278 4.54908 4.58588 4.66710 4.76839 4.88981 4.92963 5.02973 5.05976 5.22237 5.34129 5.36924 5.40517 5.44828 5.52736 5.57642 5.64221 5.71617 5.72868 5.85947 5.88947 5.92202 5.97180 6.00225 6.03673 6.10983 6.18468 6.35371 6.37694 6.46761 6.48884 6.53781 6.65573 6.77190 6.81524 6.90428 6.98580 7.21114 7.48664 7.64082 7.71319 7.82232 8.26701 8.35763 9.12758 9.75983 10.33703 11.20588 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011727 B = 0.003288 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.048613 B = 8513.855303 C =10288.641402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.104 4.104 3 C 0.135 3.865 4 N -0.706 5.706 5 C 0.555 3.445 6 O -0.541 6.541 7 C -0.079 4.079 8 C -0.141 4.141 9 C 0.103 3.897 10 N -0.466 5.466 11 C 0.150 3.850 12 C -0.107 4.107 13 C -0.174 4.174 14 C -0.161 4.161 15 C -0.115 4.115 16 C -0.095 4.095 17 C -0.135 4.135 18 C 0.143 3.857 19 N -0.589 5.589 20 C -0.249 4.249 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.902 5.902 24 Si 0.896 3.104 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.186 3.814 29 H 0.043 0.957 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.406 0.594 35 H 0.143 0.857 36 H 0.164 0.836 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.148 0.852 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.052 0.948 48 H 0.017 0.983 49 H 0.253 0.747 50 H 0.018 0.982 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.152 13.505 -3.058 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.106 4.106 3 C 0.012 3.988 4 N -0.357 5.357 5 C 0.341 3.659 6 O -0.419 6.419 7 C -0.090 4.090 8 C -0.161 4.161 9 C -0.054 4.054 10 N -0.176 5.176 11 C 0.012 3.988 12 C -0.126 4.126 13 C -0.212 4.212 14 C -0.199 4.199 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.174 4.174 18 C 0.017 3.983 19 N -0.311 5.311 20 C -0.379 4.379 21 H 0.082 0.918 22 C -0.195 4.195 23 N -0.546 5.546 24 Si 0.726 3.274 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.060 3.940 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.244 0.756 35 H 0.161 0.839 36 H 0.182 0.818 37 H 0.140 0.860 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.114 0.886 42 H 0.165 0.835 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.071 0.929 48 H 0.035 0.965 49 H 0.063 0.937 50 H 0.036 0.964 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.919 14.343 -2.737 14.728 hybrid contribution -0.552 -1.069 0.389 1.265 sum -2.471 13.274 -2.348 13.705 Atomic orbital electron populations 1.21732 0.94466 1.02750 0.99424 1.21561 0.96516 0.92558 0.99955 1.21457 0.99090 0.92139 0.86145 1.45998 1.52633 1.11153 1.25966 1.18118 0.80564 0.82086 0.85154 1.90740 1.38091 1.66501 1.46559 1.20422 0.98215 0.94829 0.95569 1.22479 0.97179 1.01574 0.94887 1.22742 0.97128 0.89705 0.95847 1.67252 1.11466 1.09141 1.29700 1.20289 0.93673 0.94610 0.90205 1.20736 0.93616 0.91593 1.06611 1.23148 1.01004 1.02004 0.94998 1.22990 0.98104 1.03499 0.95303 1.22060 0.99540 0.93883 0.98049 1.21342 0.99998 0.96035 0.95939 1.22045 1.00995 0.95662 0.98720 1.20937 0.96409 0.94254 0.86744 1.43979 1.65322 1.05516 1.16239 1.19159 1.17622 1.15385 0.85708 0.91758 1.25013 0.96992 1.00646 0.96876 1.70040 1.27264 1.38617 1.18715 0.86400 0.81494 0.77838 0.81703 1.21399 1.21486 1.20474 1.20780 0.96233 0.83862 0.93158 0.93821 0.94424 0.90815 0.91527 0.91950 0.75592 0.83886 0.81842 0.85964 0.87987 0.87911 0.88092 0.88575 0.83488 0.93327 0.92507 0.91935 0.93155 0.92904 0.96541 0.93653 0.96405 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 7.81 37.16 0.29 -1.76 16 2 C -0.10 -1.75 0.53 -154.39 -0.08 -1.83 16 3 C 0.14 2.17 4.57 -4.04 -0.02 2.15 16 4 N -0.71 -11.19 4.95 -61.15 -0.30 -11.49 16 5 C 0.56 9.11 7.80 -12.19 -0.10 9.01 16 6 O -0.54 -10.14 16.45 5.36 0.09 -10.05 16 7 C -0.08 -1.15 5.91 -104.64 -0.62 -1.77 16 8 C -0.14 -1.87 9.62 -39.02 -0.38 -2.24 16 9 C 0.10 1.30 11.17 -17.60 -0.20 1.10 16 10 N -0.47 -6.32 10.25 -9.52 -0.10 -6.42 16 11 C 0.15 1.91 6.46 -82.63 -0.53 1.38 16 12 C -0.11 -1.07 6.21 -91.77 -0.57 -1.64 16 13 C -0.17 -1.46 9.80 -26.70 -0.26 -1.72 16 14 C -0.16 -1.42 10.24 -26.70 -0.27 -1.69 16 15 C -0.11 -1.55 8.93 -39.02 -0.35 -1.90 16 16 C -0.09 -1.49 4.71 -26.69 -0.13 -1.61 16 17 C -0.14 -2.18 5.74 -26.62 -0.15 -2.33 16 18 C 0.14 2.82 6.52 -3.71 -0.02 2.80 16 19 N -0.59 -13.53 2.43 -172.32 -0.42 -13.95 16 20 C -0.25 -6.34 9.58 -15.06 -0.14 -6.48 16 21 H 0.06 1.63 7.89 -52.48 -0.41 1.22 16 22 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 23 N -0.90 -24.28 11.20 55.49 0.62 -23.66 16 24 Si 0.90 20.31 29.59 -169.99 -5.03 15.28 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 28 C 0.19 3.98 3.72 -3.71 -0.01 3.97 16 29 H 0.04 0.70 6.87 -51.92 -0.36 0.34 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.33 5.97 -51.93 -0.31 1.02 16 32 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.41 6.33 4.36 -40.82 -0.18 6.15 16 35 H 0.14 1.78 6.54 -52.48 -0.34 1.44 16 36 H 0.16 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.10 0.91 6.37 -51.93 -0.33 0.58 16 39 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.15 1.88 5.92 -52.48 -0.31 1.57 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.06 1.02 6.33 -51.93 -0.33 0.69 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.25 6.67 8.31 -40.82 -0.34 6.33 16 50 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 51 H 0.09 2.01 4.96 -51.93 -0.26 1.75 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -29.51 397.63 -10.65 -40.16 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.87 Total: 8.73 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -3.63 Total: -4.59 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: -0.20 Total: -55.52 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -29.51 -10.65 -40.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484162275.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.832 kcal (2) G-P(sol) polarization free energy of solvation -29.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds