Wall clock time and date at job start Wed Apr 1 2020 02:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.49822 * 2 1 4 4 N 1.46504 * 109.47170 * 299.93538 * 3 2 1 5 5 C 1.34769 * 119.99883 * 180.02562 * 4 3 2 6 6 O 1.21516 * 119.99973 * 0.02562 * 5 4 3 7 7 C 1.48148 * 120.00172 * 180.02562 * 5 4 3 8 8 C 1.39837 * 120.92120 * 359.97438 * 7 5 4 9 9 C 1.38130 * 119.00395 * 179.97438 * 8 7 5 10 10 N 1.31824 * 120.89740 * 359.97438 * 9 8 7 11 11 C 1.31794 * 122.04987 * 0.02562 * 10 9 8 12 12 C 1.50695 * 119.55308 * 180.02562 * 11 10 9 13 13 C 1.53005 * 117.49726 * 163.61936 * 12 11 10 14 14 C 1.53008 * 117.49849 * 94.99701 * 12 11 10 15 15 C 1.38182 * 120.89358 * 359.72892 * 11 10 9 16 16 C 1.53033 * 109.49822 * 120.09830 * 2 1 3 17 17 C 1.53044 * 109.53734 * 58.58410 * 16 2 1 18 18 C 1.52764 * 109.38421 * 61.24063 * 17 16 2 19 19 N 1.46924 * 109.00679 * 305.59100 * 18 17 16 20 20 C 1.36938 * 120.62778 * 233.58359 * 19 18 17 21 21 H 1.08007 * 119.99991 * 151.82155 * 20 19 18 22 22 C 1.38814 * 119.99902 * 331.82344 * 20 19 18 23 23 N 1.31612 * 120.00117 * 335.48818 * 22 20 19 24 24 Si 1.86804 * 119.99854 * 155.49112 * 22 20 19 25 25 H 1.48499 * 109.47162 * 179.97438 * 24 22 20 26 26 H 1.48502 * 109.47120 * 59.99586 * 24 22 20 27 27 H 1.48500 * 109.46769 * 299.99906 * 24 22 20 28 28 C 1.46922 * 118.74060 * 53.30690 * 19 18 17 29 29 H 1.08997 * 109.47654 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47221 * 300.06825 * 1 2 3 31 31 H 1.09009 * 109.47394 * 60.06123 * 1 2 3 32 32 H 1.08997 * 109.47110 * 59.93531 * 3 2 1 33 33 H 1.09002 * 109.46596 * 179.97438 * 3 2 1 34 34 H 0.97003 * 119.99815 * 0.02562 * 4 3 2 35 35 H 1.08001 * 120.49882 * 359.97438 * 8 7 5 36 36 H 1.07998 * 119.54872 * 180.02562 * 9 8 7 37 37 H 1.08998 * 115.55042 * 309.32672 * 12 11 10 38 38 H 1.08997 * 117.50124 * 359.97438 * 13 12 11 39 39 H 1.08999 * 117.49708 * 145.02462 * 13 12 11 40 40 H 1.09004 * 117.49749 * 214.97701 * 14 12 11 41 41 H 1.08994 * 117.50113 * 0.02562 * 14 12 11 42 42 H 1.08003 * 120.49739 * 180.28959 * 15 11 10 43 43 H 1.08996 * 109.46054 * 178.60444 * 16 2 1 44 44 H 1.08999 * 109.46215 * 298.57782 * 16 2 1 45 45 H 1.09006 * 109.49810 * 181.31953 * 17 16 2 46 46 H 1.08997 * 109.49642 * 301.41273 * 17 16 2 47 47 H 1.09003 * 109.51083 * 185.70671 * 18 17 16 48 48 H 1.08993 * 109.42915 * 65.42263 * 18 17 16 49 49 H 0.97007 * 120.00145 * 354.24189 * 23 22 20 50 50 H 1.08991 * 109.58789 * 66.43320 * 28 19 18 51 51 H 1.08999 * 109.58821 * 186.71735 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 7 1.5539 2.1327 -1.1970 5 6 1.8808 3.4226 -1.4106 6 8 2.5796 4.0128 -0.6107 7 6 1.3881 4.1210 -2.6207 8 6 0.5833 3.4603 -3.5541 9 6 0.1456 4.1497 -4.6681 10 7 0.4764 5.4119 -4.8563 11 6 1.2325 6.0716 -4.0018 12 6 1.5756 7.5138 -4.2725 13 6 2.1145 8.3428 -3.1049 14 6 0.6951 8.5834 -3.6230 15 6 1.7098 5.4605 -2.8581 16 6 2.0408 -0.7234 1.2481 17 6 1.5029 -2.1561 1.2653 18 6 2.0090 -2.9026 0.0322 19 7 1.6515 -2.1378 -1.1703 20 6 0.9630 -2.7305 -2.1949 21 1 0.3220 -2.1364 -2.8295 22 6 1.0889 -4.0948 -2.4179 23 7 2.1685 -4.7306 -2.0150 24 14 -0.2741 -5.0284 -3.2899 25 1 0.1014 -6.4606 -3.4039 26 1 -0.4735 -4.4598 -4.6472 27 1 -1.5333 -4.9066 -2.5123 28 6 2.0413 -0.7235 -1.2498 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5149 0.8894 31 1 -0.3634 0.5129 -0.8906 32 1 1.6766 1.9566 0.8894 33 1 3.1307 1.4417 0.0005 34 1 0.9964 1.6614 -1.8357 35 1 0.3081 2.4264 -3.4062 36 1 -0.4767 3.6482 -5.3944 37 1 1.9732 7.7241 -5.2653 38 1 2.2205 7.8453 -2.1410 39 1 2.8670 9.0987 -3.3295 40 1 0.5138 9.4975 -4.1885 41 1 -0.1321 8.2439 -2.9997 42 1 2.3252 6.0086 -2.1599 43 1 3.1304 -0.7448 1.2350 44 1 1.6986 -0.1966 2.1388 45 1 1.8479 -2.6635 2.1663 46 1 0.4132 -2.1358 1.2534 47 1 1.5471 -3.8889 -0.0112 48 1 3.0924 -3.0063 0.0905 49 1 2.9116 -4.2339 -1.6379 50 1 3.1273 -0.6459 -1.2983 51 1 1.6027 -0.2731 -2.1403 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484162276.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:51 Heat of formation + Delta-G solvation = 37.597661 kcal Electronic energy + Delta-G solvation = -30152.812356 eV Core-core repulsion = 26246.051985 eV Total energy + Delta-G solvation = -3906.760372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.00309 -39.70534 -38.51055 -37.27174 -35.26973 -33.64248 -32.82162 -31.26952 -30.84407 -30.41083 -26.97279 -26.12767 -25.18944 -25.00627 -24.12785 -22.69555 -22.29840 -21.80377 -20.70401 -20.21559 -18.48692 -17.76148 -17.36510 -17.06024 -16.06099 -15.86085 -15.60835 -15.51471 -15.09387 -14.64997 -14.40849 -14.35871 -14.14143 -13.86623 -13.80518 -13.72052 -13.50253 -12.99546 -12.62234 -12.48359 -12.23981 -12.08012 -11.95900 -11.69313 -11.41822 -11.11549 -11.09260 -10.93536 -10.83261 -10.67008 -10.48681 -10.41573 -10.20804 -10.11970 -10.10317 -9.93154 -9.83786 -9.65587 -9.29365 -9.22492 -9.09909 -8.42182 -6.93038 -6.11546 -3.29274 0.46467 0.76588 2.70728 2.97456 3.31694 3.44721 3.47892 3.59603 3.65951 3.84029 4.35280 4.38625 4.51791 4.52993 4.59560 4.68813 4.76239 4.84787 4.87663 5.08810 5.13400 5.16451 5.26801 5.29485 5.41866 5.44911 5.49009 5.53935 5.64478 5.69505 5.70885 5.76236 5.76640 5.85247 5.87542 5.95198 6.02973 6.19013 6.23667 6.29791 6.38333 6.40099 6.42135 6.58276 6.64428 6.67643 6.78744 7.06418 7.16580 7.36615 7.64134 7.92486 8.02265 8.52060 9.05587 9.78731 10.23702 11.16666 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.002554 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.569723 B =10959.128122 C =12353.018731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 C 0.132 3.868 4 N -0.711 5.711 5 C 0.555 3.445 6 O -0.535 6.535 7 C -0.081 4.081 8 C -0.145 4.145 9 C 0.104 3.896 10 N -0.465 5.465 11 C 0.153 3.847 12 C -0.109 4.109 13 C -0.174 4.174 14 C -0.161 4.161 15 C -0.114 4.114 16 C -0.095 4.095 17 C -0.138 4.138 18 C 0.149 3.851 19 N -0.594 5.594 20 C -0.349 4.349 21 H 0.055 0.945 22 C -0.023 4.023 23 N -0.914 5.914 24 Si 1.063 2.937 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.162 3.838 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.404 0.596 35 H 0.142 0.858 36 H 0.166 0.834 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.148 0.852 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.015 0.985 49 H 0.269 0.731 50 H 0.016 0.984 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.086 20.701 0.079 20.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.095 4.095 3 C 0.009 3.991 4 N -0.363 5.363 5 C 0.341 3.659 6 O -0.413 6.413 7 C -0.092 4.092 8 C -0.166 4.166 9 C -0.053 4.053 10 N -0.174 5.174 11 C 0.016 3.984 12 C -0.127 4.127 13 C -0.211 4.211 14 C -0.198 4.198 15 C -0.135 4.135 16 C -0.133 4.133 17 C -0.177 4.177 18 C 0.023 3.977 19 N -0.317 5.317 20 C -0.478 4.478 21 H 0.072 0.928 22 C -0.225 4.225 23 N -0.554 5.554 24 Si 0.892 3.108 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.221 1.221 28 C 0.035 3.965 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.241 0.759 35 H 0.160 0.840 36 H 0.183 0.817 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.113 0.887 42 H 0.166 0.834 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.033 0.967 49 H 0.080 0.920 50 H 0.034 0.966 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.390 19.957 -0.583 20.251 hybrid contribution 0.541 0.767 0.831 1.253 sum -2.849 20.724 0.247 20.921 Atomic orbital electron populations 1.21769 0.94057 1.03244 0.99647 1.21343 0.96747 0.92218 0.99181 1.21519 0.99154 0.92044 0.86398 1.46013 1.52901 1.11336 1.26051 1.18142 0.80561 0.81996 0.85231 1.90764 1.37779 1.66325 1.46444 1.20407 0.98372 0.94893 0.95510 1.22438 0.97548 1.01582 0.95013 1.22768 0.97074 0.89678 0.95800 1.67268 1.10936 1.09012 1.30226 1.20320 0.93201 0.94804 0.90108 1.20760 1.05792 0.87079 0.99100 1.23147 0.97395 1.02481 0.98086 1.22982 0.94350 0.99331 1.03182 1.22088 0.99390 0.93881 0.98131 1.21353 0.99999 0.96402 0.95550 1.22040 1.01123 0.95236 0.99337 1.20880 0.96382 0.95982 0.84461 1.44024 1.66022 1.05823 1.15832 1.19903 1.22410 0.94587 1.10941 0.92759 1.25817 1.01001 0.95332 1.00372 1.70777 1.03729 1.39622 1.41294 0.83558 0.75195 0.76427 0.75587 1.21113 1.22015 1.22062 1.20866 0.95891 0.86351 0.93380 0.90346 0.93944 0.93932 0.91520 0.91353 0.75923 0.84042 0.81713 0.85812 0.88018 0.87797 0.88002 0.88658 0.83395 0.92475 0.93050 0.92996 0.91909 0.90312 0.96687 0.91954 0.96568 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 7.81 37.16 0.29 -1.66 16 2 C -0.09 -1.43 0.53 -154.39 -0.08 -1.51 16 3 C 0.13 1.86 4.57 -4.04 -0.02 1.84 16 4 N -0.71 -9.36 4.95 -61.15 -0.30 -9.66 16 5 C 0.55 7.81 7.80 -12.19 -0.10 7.72 16 6 O -0.54 -9.05 16.45 5.35 0.09 -8.96 16 7 C -0.08 -0.99 5.91 -104.65 -0.62 -1.60 16 8 C -0.15 -1.51 9.62 -39.02 -0.38 -1.89 16 9 C 0.10 1.05 11.17 -17.59 -0.20 0.85 16 10 N -0.47 -5.39 10.25 -9.52 -0.10 -5.49 16 11 C 0.15 1.69 6.46 -82.63 -0.53 1.15 16 12 C -0.11 -0.94 6.22 -91.77 -0.57 -1.51 16 13 C -0.17 -1.22 9.79 -26.72 -0.26 -1.48 16 14 C -0.16 -1.16 10.24 -26.72 -0.27 -1.43 16 15 C -0.11 -1.32 8.93 -39.02 -0.35 -1.67 16 16 C -0.09 -1.47 4.71 -26.69 -0.13 -1.59 16 17 C -0.14 -2.43 5.72 -26.83 -0.15 -2.58 16 18 C 0.15 3.29 4.66 -3.93 -0.02 3.27 16 19 N -0.59 -13.69 2.29 -172.59 -0.40 -14.09 16 20 C -0.35 -9.10 9.49 -15.06 -0.14 -9.24 16 21 H 0.05 1.41 7.94 -52.48 -0.42 0.99 16 22 C -0.02 -0.62 4.69 -17.43 -0.08 -0.70 16 23 N -0.91 -26.52 12.42 55.49 0.69 -25.83 16 24 Si 1.06 24.28 29.98 -169.99 -5.10 19.18 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.16 3.09 4.93 -3.71 -0.02 3.07 16 29 H 0.08 1.39 5.97 -51.93 -0.31 1.08 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.59 6.87 -51.92 -0.36 0.23 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.40 4.87 4.37 -40.82 -0.18 4.69 16 35 H 0.14 1.24 6.54 -52.49 -0.34 0.90 16 36 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 0.75 6.38 -51.93 -0.33 0.42 16 39 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.15 1.64 5.93 -52.48 -0.31 1.33 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.06 1.12 6.33 -51.93 -0.33 0.79 16 47 H 0.08 1.98 6.32 -51.93 -0.33 1.65 16 48 H 0.02 0.35 7.86 -51.93 -0.41 -0.06 16 49 H 0.27 7.89 6.69 -40.82 -0.27 7.62 16 50 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 51 H 0.05 0.93 6.84 -51.93 -0.36 0.58 16 LS Contribution 396.55 15.07 5.98 5.98 Total: -1.00 -31.18 396.55 -10.57 -41.75 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -7.81 Total: 6.10 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: -3.62 Total: -8.97 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.11 Total: -55.07 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.10 Total: 19.18 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.18 -10.57 -41.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484162276.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.347 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds