Wall clock time and date at job start Wed Apr 1 2020 02:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.28950 * 2 1 4 4 N 1.46503 * 109.47382 * 302.13725 * 3 2 1 5 5 C 1.36938 * 120.00093 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99824 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99722 * 179.97438 * 5 4 3 8 8 N 1.31615 * 119.99978 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99605 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47178 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46767 * 120.00320 * 9 7 5 12 12 H 1.48493 * 109.47152 * 239.99763 * 9 7 5 13 13 C 1.54617 * 110.32585 * 237.76297 * 2 1 3 14 14 C 1.54602 * 102.90973 * 262.80631 * 13 2 1 15 15 N 1.48120 * 103.41924 * 322.86554 * 14 13 2 16 16 C 1.34775 * 127.03259 * 219.28764 * 15 14 13 17 17 O 1.21288 * 119.99838 * 179.69025 * 16 15 14 18 18 C 1.50703 * 120.00298 * 359.68166 * 16 15 14 19 19 N 1.46894 * 109.47187 * 185.78299 * 18 16 15 20 20 C 1.47905 * 111.00495 * 75.74236 * 19 18 16 21 21 C 1.54601 * 102.62571 * 94.57568 * 20 19 18 22 22 C 1.51576 * 102.82645 * 25.56458 * 21 20 19 23 23 C 1.37922 * 131.56220 * 163.79929 * 22 21 20 24 24 C 1.38299 * 120.07874 * 180.15375 * 23 22 21 25 25 C 1.38301 * 119.88334 * 0.46299 * 24 23 22 26 26 C 1.37912 * 120.26741 * 359.38794 * 25 24 23 27 27 C 1.38965 * 107.95204 * 343.95833 * 22 21 20 28 28 C 1.47487 * 105.93373 * 39.02658 * 15 14 13 29 29 H 1.08999 * 109.47016 * 297.86309 * 1 2 3 30 30 H 1.08997 * 109.47255 * 57.86343 * 1 2 3 31 31 H 1.08996 * 109.47016 * 177.86301 * 1 2 3 32 32 H 1.09008 * 109.47161 * 62.13537 * 3 2 1 33 33 H 1.09000 * 109.47309 * 182.13474 * 3 2 1 34 34 H 0.97003 * 119.99431 * 0.02562 * 4 3 2 35 35 H 0.97004 * 119.99726 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.73719 * 21.28384 * 13 2 1 37 37 H 1.08998 * 110.74510 * 144.43789 * 13 2 1 38 38 H 1.08994 * 110.62066 * 204.35857 * 14 13 2 39 39 H 1.08997 * 110.54808 * 81.34128 * 14 13 2 40 40 H 1.09001 * 109.46604 * 65.78288 * 18 16 15 41 41 H 1.09000 * 109.46776 * 305.78320 * 18 16 15 42 42 H 1.09000 * 110.78334 * 212.86656 * 20 19 18 43 43 H 1.09002 * 110.77457 * 336.10837 * 20 19 18 44 44 H 1.09003 * 110.73842 * 143.89430 * 21 20 19 45 45 H 1.08994 * 110.74788 * 267.04734 * 21 20 19 46 46 H 1.08005 * 119.95960 * 0.40005 * 23 22 21 47 47 H 1.08003 * 120.06270 * 180.24214 * 24 23 22 48 48 H 1.08007 * 119.86699 * 179.65800 * 25 24 23 49 49 H 1.07990 * 119.90322 * 180.33909 * 26 25 24 50 50 H 1.09001 * 109.91573 * 94.13746 * 28 15 14 51 51 H 1.09004 * 109.91368 * 215.42068 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4351 0.0000 4 7 1.5408 2.1479 -1.1696 5 6 1.8824 3.4570 -1.3812 6 1 2.5353 3.9638 -0.6860 7 6 1.3903 4.1323 -2.4897 8 7 0.5950 3.5144 -3.3370 9 14 1.8569 5.9179 -2.7786 10 1 2.7560 6.3770 -1.6896 11 1 2.5563 6.0418 -4.0828 12 1 0.6298 6.7539 -2.7937 13 6 2.0671 -0.7734 -1.2264 14 6 2.3641 -2.1758 -0.6474 15 7 2.8805 -1.8850 0.7100 16 6 3.8924 -2.5094 1.3445 17 8 4.2152 -2.1611 2.4606 18 6 4.6228 -3.6404 0.6674 19 7 5.5787 -4.2390 1.6085 20 6 4.8847 -5.0892 2.6001 21 6 4.9848 -6.4964 1.9678 22 6 6.2195 -6.3863 1.0955 23 6 7.0103 -7.3487 0.5033 24 6 8.1040 -6.9758 -0.2566 25 6 8.4092 -5.6361 -0.4140 26 6 7.6199 -4.6697 0.1735 27 6 6.5122 -5.0372 0.9359 28 6 2.0651 -0.7682 1.2228 29 1 -0.3633 0.4803 0.9085 30 1 -0.3633 0.5466 -0.8702 31 1 -0.3633 -1.0269 -0.0383 32 1 1.7360 1.9425 0.9086 33 1 3.1498 1.4198 -0.0383 34 1 0.9540 1.6928 -1.7937 35 1 0.2514 3.9862 -4.1118 36 1 1.3105 -0.8295 -2.0090 37 1 2.9788 -0.3115 -1.6052 38 1 3.1195 -2.6858 -1.2451 39 1 1.4508 -2.7683 -0.5926 40 1 5.1590 -3.2581 -0.2012 41 1 3.9055 -4.3964 0.3479 42 1 5.3978 -5.0597 3.5614 43 1 3.8439 -4.7844 2.7096 44 1 5.1222 -7.2563 2.7371 45 1 4.1020 -6.7131 1.3664 46 1 6.7728 -8.3947 0.6300 47 1 8.7208 -7.7296 -0.7233 48 1 9.2666 -5.3454 -1.0029 49 1 7.8605 -3.6252 0.0422 50 1 1.2331 -1.1554 1.8111 51 1 2.6810 -0.1092 1.8348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569694239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:36 Heat of formation + Delta-G solvation = 28.612311 kcal Electronic energy + Delta-G solvation = -29866.283514 eV Core-core repulsion = 25959.133509 eV Total energy + Delta-G solvation = -3907.150006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.25166 -39.97292 -38.12060 -36.78531 -34.81778 -32.90632 -32.56945 -30.58242 -30.15571 -29.41441 -29.21721 -27.61077 -26.13151 -25.06927 -23.38464 -23.12299 -22.39500 -21.56278 -21.35059 -19.27335 -18.68575 -17.43969 -17.17873 -16.70926 -16.47472 -16.01191 -15.60109 -15.55366 -15.15150 -14.59990 -14.24944 -14.08155 -14.00598 -13.85341 -13.60747 -13.39312 -13.22275 -12.97605 -12.81539 -12.64461 -12.55826 -12.39037 -12.15703 -12.06410 -11.85517 -11.70188 -11.52237 -11.38029 -11.18202 -11.01251 -10.83715 -10.61992 -10.33611 -10.23970 -10.14463 -9.90662 -9.68103 -9.49943 -9.11663 -8.88348 -8.64771 -8.18646 -6.91875 -5.77840 -3.05445 0.97565 1.07741 2.61793 2.76860 3.37570 3.43021 3.47288 3.49468 3.51257 4.20318 4.37324 4.41123 4.58517 4.63367 4.70998 4.73524 4.78444 4.84350 4.91218 4.97566 5.07903 5.11217 5.15915 5.28092 5.29086 5.37756 5.40848 5.46876 5.51007 5.59335 5.60384 5.73639 5.78063 5.87830 5.93032 6.00012 6.04390 6.07720 6.11444 6.21036 6.22610 6.30973 6.40651 6.41644 6.50544 6.55734 6.66949 6.78280 6.86485 6.95579 7.55372 7.71255 8.18993 8.41712 9.53413 10.10553 10.46025 11.45229 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.002147 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.018471 B =13036.185925 C =13817.379159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C 0.167 3.833 4 N -0.729 5.729 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.015 4.015 8 N -0.934 5.934 9 Si 0.906 3.094 10 H -0.281 1.281 11 H -0.292 1.292 12 H -0.292 1.292 13 C -0.119 4.119 14 C 0.097 3.903 15 N -0.620 5.620 16 C 0.530 3.470 17 O -0.523 6.523 18 C 0.046 3.954 19 N -0.474 5.474 20 C 0.059 3.941 21 C -0.113 4.113 22 C -0.139 4.139 23 C -0.090 4.090 24 C -0.132 4.132 25 C -0.103 4.103 26 C -0.109 4.109 27 C 0.092 3.908 28 C 0.119 3.881 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.021 0.979 33 H 0.020 0.980 34 H 0.384 0.616 35 H 0.254 0.746 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.120 0.880 47 H 0.125 0.875 48 H 0.127 0.873 49 H 0.126 0.874 50 H 0.066 0.934 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.516 -25.467 6.721 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.080 4.080 3 C 0.039 3.961 4 N -0.374 5.374 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.583 5.583 9 Si 0.737 3.263 10 H -0.206 1.206 11 H -0.219 1.219 12 H -0.219 1.219 13 C -0.157 4.157 14 C -0.026 4.026 15 N -0.355 5.355 16 C 0.317 3.683 17 O -0.398 6.398 18 C -0.083 4.083 19 N -0.191 5.191 20 C -0.068 4.068 21 C -0.151 4.151 22 C -0.141 4.141 23 C -0.109 4.109 24 C -0.151 4.151 25 C -0.122 4.122 26 C -0.129 4.129 27 C -0.004 4.004 28 C -0.004 4.004 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.038 0.962 34 H 0.219 0.781 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.099 0.901 46 H 0.138 0.862 47 H 0.143 0.857 48 H 0.145 0.855 49 H 0.144 0.856 50 H 0.084 0.916 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.052 -24.685 7.700 27.397 hybrid contribution -0.347 0.336 -0.894 1.016 sum 8.705 -24.349 6.806 26.739 Atomic orbital electron populations 1.21814 0.93300 1.00648 1.03241 1.21653 0.96390 0.96472 0.93530 1.20704 0.95765 0.88165 0.91466 1.42364 1.58348 1.10698 1.25943 1.19281 1.23580 0.87844 1.06027 0.91215 1.24711 1.00296 0.98303 0.97714 1.69658 1.37491 1.36136 1.15053 0.86129 0.77547 0.85036 0.77580 1.20584 1.21920 1.21905 1.22708 1.02700 0.92971 0.97293 1.22593 0.98829 0.98589 0.82589 1.48836 1.33385 1.35333 1.17979 1.19986 0.78863 0.83396 0.86048 1.90721 1.64761 1.65276 1.19022 1.22039 0.95012 0.95969 0.95277 1.59625 1.13621 1.32329 1.13474 1.23134 0.99431 0.88415 0.95803 1.21746 0.95449 0.99446 0.98484 1.21015 0.97771 0.94277 1.01057 1.20396 0.94710 0.98588 0.97178 1.21070 0.97882 0.96228 0.99920 1.20961 0.99304 0.92684 0.99256 1.20584 0.93612 1.00299 0.98441 1.19541 0.94575 0.90579 0.95750 1.22137 0.94080 0.87764 0.96419 0.92651 0.90814 0.93489 0.96148 0.96228 0.78089 0.93621 0.89661 0.90113 0.90635 0.90955 0.87555 0.91160 0.88891 0.89739 0.89419 0.90095 0.86208 0.85749 0.85470 0.85603 0.91607 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.93 8.04 37.16 0.30 -1.64 16 2 C -0.08 -1.21 0.67 -153.14 -0.10 -1.32 16 3 C 0.17 3.32 4.85 -4.04 -0.02 3.30 16 4 N -0.73 -17.79 5.12 -59.90 -0.31 -18.09 16 5 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 7 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 8 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 9 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 C -0.12 -1.65 5.72 -25.04 -0.14 -1.79 16 14 C 0.10 1.04 6.93 -2.31 -0.02 1.03 16 15 N -0.62 -8.12 3.29 -169.97 -0.56 -8.68 16 16 C 0.53 7.38 7.35 -10.98 -0.08 7.30 16 17 O -0.52 -9.22 16.31 5.55 0.09 -9.13 16 18 C 0.05 0.50 4.08 -4.98 -0.02 0.48 16 19 N -0.47 -5.55 4.59 -170.38 -0.78 -6.33 16 20 C 0.06 0.58 6.36 -2.43 -0.02 0.57 16 21 C -0.11 -0.88 6.92 -26.61 -0.18 -1.07 16 22 C -0.14 -1.29 6.23 -104.04 -0.65 -1.94 16 23 C -0.09 -0.72 10.03 -39.67 -0.40 -1.12 16 24 C -0.13 -1.00 10.06 -39.54 -0.40 -1.39 16 25 C -0.10 -0.84 10.02 -39.68 -0.40 -1.24 16 26 C -0.11 -1.08 10.04 -39.27 -0.39 -1.47 16 27 C 0.09 0.98 5.50 -83.40 -0.46 0.53 16 28 C 0.12 1.69 6.29 -2.98 -0.02 1.67 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.26 6.74 -51.93 -0.35 0.91 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.02 0.42 8.11 -51.93 -0.42 -0.01 16 34 H 0.38 9.65 6.18 -40.82 -0.25 9.40 16 35 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.08 1.17 7.85 -51.93 -0.41 0.76 16 37 H 0.08 1.28 7.85 -51.93 -0.41 0.88 16 38 H 0.08 0.67 7.38 -51.93 -0.38 0.29 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 1.08 7.93 -51.93 -0.41 0.67 16 41 H 0.07 0.63 7.95 -51.93 -0.41 0.22 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 0.84 7.30 -51.93 -0.38 0.46 16 44 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 47 H 0.12 0.65 8.06 -52.48 -0.42 0.23 16 48 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 49 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 50 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 51 H 0.08 1.24 7.59 -51.93 -0.39 0.85 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -33.17 405.76 -11.40 -44.57 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -8.42 Total: 6.46 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -3.24 Total: -5.31 kcal Atomic # 7 Polarization: -59.14 SS G_CDS: -0.92 Total: -60.06 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.17 -11.40 -44.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569694239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.181 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds