Wall clock time and date at job start Wed Apr 1 2020 02:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 110.28950 * 2 1 4 4 N 1.46503 * 109.47382 * 302.13725 * 3 2 1 5 5 C 1.36938 * 120.00093 * 179.97438 * 4 3 2 6 6 H 1.07997 * 119.99824 * 0.02562 * 5 4 3 7 7 C 1.38814 * 119.99722 * 179.97438 * 5 4 3 8 8 N 1.31615 * 119.99978 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99605 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47178 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46767 * 120.00320 * 9 7 5 12 12 H 1.48493 * 109.47152 * 239.99763 * 9 7 5 13 13 C 1.54617 * 110.32585 * 237.76297 * 2 1 3 14 14 C 1.54602 * 102.90973 * 262.80631 * 13 2 1 15 15 N 1.48120 * 103.41924 * 322.86554 * 14 13 2 16 16 C 1.34775 * 127.03259 * 219.28764 * 15 14 13 17 17 O 1.21288 * 119.99838 * 179.69025 * 16 15 14 18 18 C 1.50703 * 120.00298 * 359.68166 * 16 15 14 19 19 N 1.46894 * 109.47187 * 185.78299 * 18 16 15 20 20 C 1.47905 * 111.00495 * 75.74236 * 19 18 16 21 21 C 1.54601 * 102.62571 * 94.57568 * 20 19 18 22 22 C 1.51576 * 102.82645 * 25.56458 * 21 20 19 23 23 C 1.37922 * 131.56220 * 163.79929 * 22 21 20 24 24 C 1.38299 * 120.07874 * 180.15375 * 23 22 21 25 25 C 1.38301 * 119.88334 * 0.46299 * 24 23 22 26 26 C 1.37912 * 120.26741 * 359.38794 * 25 24 23 27 27 C 1.38965 * 107.95204 * 343.95833 * 22 21 20 28 28 C 1.47487 * 105.93373 * 39.02658 * 15 14 13 29 29 H 1.08999 * 109.47016 * 297.86309 * 1 2 3 30 30 H 1.08997 * 109.47255 * 57.86343 * 1 2 3 31 31 H 1.08996 * 109.47016 * 177.86301 * 1 2 3 32 32 H 1.09008 * 109.47161 * 62.13537 * 3 2 1 33 33 H 1.09000 * 109.47309 * 182.13474 * 3 2 1 34 34 H 0.97003 * 119.99431 * 0.02562 * 4 3 2 35 35 H 0.97004 * 119.99726 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.73719 * 21.28384 * 13 2 1 37 37 H 1.08998 * 110.74510 * 144.43789 * 13 2 1 38 38 H 1.08994 * 110.62066 * 204.35857 * 14 13 2 39 39 H 1.08997 * 110.54808 * 81.34128 * 14 13 2 40 40 H 1.09001 * 109.46604 * 65.78288 * 18 16 15 41 41 H 1.09000 * 109.46776 * 305.78320 * 18 16 15 42 42 H 1.09000 * 110.78334 * 212.86656 * 20 19 18 43 43 H 1.09002 * 110.77457 * 336.10837 * 20 19 18 44 44 H 1.09003 * 110.73842 * 143.89430 * 21 20 19 45 45 H 1.08994 * 110.74788 * 267.04734 * 21 20 19 46 46 H 1.08005 * 119.95960 * 0.40005 * 23 22 21 47 47 H 1.08003 * 120.06270 * 180.24214 * 24 23 22 48 48 H 1.08007 * 119.86699 * 179.65800 * 25 24 23 49 49 H 1.07990 * 119.90322 * 180.33909 * 26 25 24 50 50 H 1.09001 * 109.91573 * 94.13746 * 28 15 14 51 51 H 1.09004 * 109.91368 * 215.42068 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0606 1.4351 0.0000 4 7 1.5408 2.1479 -1.1696 5 6 1.8824 3.4570 -1.3812 6 1 2.5353 3.9638 -0.6860 7 6 1.3903 4.1323 -2.4897 8 7 0.5950 3.5144 -3.3370 9 14 1.8569 5.9179 -2.7786 10 1 2.7560 6.3770 -1.6896 11 1 2.5563 6.0418 -4.0828 12 1 0.6298 6.7539 -2.7937 13 6 2.0671 -0.7734 -1.2264 14 6 2.3641 -2.1758 -0.6474 15 7 2.8805 -1.8850 0.7100 16 6 3.8924 -2.5094 1.3445 17 8 4.2152 -2.1611 2.4606 18 6 4.6228 -3.6404 0.6674 19 7 5.5787 -4.2390 1.6085 20 6 4.8847 -5.0892 2.6001 21 6 4.9848 -6.4964 1.9678 22 6 6.2195 -6.3863 1.0955 23 6 7.0103 -7.3487 0.5033 24 6 8.1040 -6.9758 -0.2566 25 6 8.4092 -5.6361 -0.4140 26 6 7.6199 -4.6697 0.1735 27 6 6.5122 -5.0372 0.9359 28 6 2.0651 -0.7682 1.2228 29 1 -0.3633 0.4803 0.9085 30 1 -0.3633 0.5466 -0.8702 31 1 -0.3633 -1.0269 -0.0383 32 1 1.7360 1.9425 0.9086 33 1 3.1498 1.4198 -0.0383 34 1 0.9540 1.6928 -1.7937 35 1 0.2514 3.9862 -4.1118 36 1 1.3105 -0.8295 -2.0090 37 1 2.9788 -0.3115 -1.6052 38 1 3.1195 -2.6858 -1.2451 39 1 1.4508 -2.7683 -0.5926 40 1 5.1590 -3.2581 -0.2012 41 1 3.9055 -4.3964 0.3479 42 1 5.3978 -5.0597 3.5614 43 1 3.8439 -4.7844 2.7096 44 1 5.1222 -7.2563 2.7371 45 1 4.1020 -6.7131 1.3664 46 1 6.7728 -8.3947 0.6300 47 1 8.7208 -7.7296 -0.7233 48 1 9.2666 -5.3454 -1.0029 49 1 7.8605 -3.6252 0.0422 50 1 1.2331 -1.1554 1.8111 51 1 2.6810 -0.1092 1.8348 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569694239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:35 Heat of formation + Delta-G solvation = 8.779210 kcal Electronic energy + Delta-G solvation = -29867.143542 eV Core-core repulsion = 25959.133509 eV Total energy + Delta-G solvation = -3908.010033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.01192 -41.03536 -39.26870 -37.53637 -36.47573 -34.41064 -33.40999 -32.18982 -31.08548 -30.55331 -29.87094 -28.55016 -27.62600 -26.45475 -24.53076 -24.01142 -23.94585 -22.19349 -22.07964 -20.36829 -19.95775 -19.17836 -18.30777 -17.63966 -17.27497 -16.99955 -16.60599 -16.44853 -16.21085 -15.93896 -15.72915 -15.33420 -15.03717 -14.91656 -14.82896 -14.55653 -14.21144 -14.14230 -13.81447 -13.70744 -13.50720 -13.32967 -13.20383 -13.07546 -13.01192 -12.90510 -12.76890 -12.59719 -12.45333 -12.18476 -12.14212 -12.08108 -11.79792 -11.64610 -11.51241 -11.39912 -11.10235 -10.95499 -10.37116 -9.74843 -9.73043 -8.98982 -8.88267 -7.96148 -5.23370 0.33724 0.44986 1.46287 1.46668 1.55093 1.56675 1.79405 2.54741 2.64176 2.81281 3.30994 3.37534 3.59762 3.65088 3.72014 3.76945 3.81198 3.95743 4.08289 4.12849 4.19896 4.22459 4.28120 4.28361 4.34088 4.41582 4.52090 4.53248 4.63123 4.67895 4.70664 4.72162 4.78578 4.87961 4.90401 4.92753 4.98746 5.01328 5.09940 5.15371 5.20973 5.25835 5.39177 5.40542 5.48809 5.49910 5.53666 5.60929 5.79184 5.84385 6.27051 6.27340 6.51578 7.11888 7.34626 8.08800 8.36261 9.27124 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017258 B = 0.002147 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.018471 B =13036.185925 C =13817.379159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.071 4.071 3 C 0.167 3.833 4 N -0.734 5.734 5 C -0.246 4.246 6 H 0.067 0.933 7 C -0.070 4.070 8 N -0.964 5.964 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.291 1.291 13 C -0.118 4.118 14 C 0.106 3.894 15 N -0.620 5.620 16 C 0.528 3.472 17 O -0.568 6.568 18 C 0.056 3.944 19 N -0.499 5.499 20 C 0.056 3.944 21 C -0.103 4.103 22 C -0.147 4.147 23 C -0.094 4.094 24 C -0.131 4.131 25 C -0.107 4.107 26 C -0.128 4.128 27 C 0.068 3.932 28 C 0.124 3.876 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.014 0.986 33 H 0.005 0.995 34 H 0.380 0.620 35 H 0.252 0.748 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.095 0.905 46 H 0.143 0.857 47 H 0.151 0.849 48 H 0.146 0.854 49 H 0.118 0.882 50 H 0.085 0.915 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.641 -28.110 6.223 30.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 C 0.040 3.960 4 N -0.378 5.378 5 C -0.378 4.378 6 H 0.085 0.915 7 C -0.262 4.262 8 N -0.614 5.614 9 Si 0.798 3.202 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.218 1.218 13 C -0.156 4.156 14 C -0.016 4.016 15 N -0.354 5.354 16 C 0.317 3.683 17 O -0.446 6.446 18 C -0.073 4.073 19 N -0.216 5.216 20 C -0.070 4.070 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.112 4.112 24 C -0.149 4.149 25 C -0.126 4.126 26 C -0.148 4.148 27 C -0.028 4.028 28 C 0.001 3.999 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.032 0.968 33 H 0.023 0.977 34 H 0.214 0.786 35 H 0.061 0.939 36 H 0.107 0.893 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.129 0.871 41 H 0.114 0.886 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.113 0.887 46 H 0.160 0.840 47 H 0.168 0.832 48 H 0.164 0.836 49 H 0.136 0.864 50 H 0.103 0.897 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.185 -27.348 7.205 29.735 hybrid contribution -0.317 1.166 -0.703 1.398 sum 8.869 -26.182 6.502 28.397 Atomic orbital electron populations 1.21740 0.92262 1.02389 1.01863 1.21510 0.97019 0.93640 0.95062 1.20781 0.94799 0.90967 0.89470 1.42462 1.58233 1.10052 1.27026 1.19595 1.23033 0.89288 1.05851 0.91518 1.25457 1.00812 1.02174 0.97784 1.69787 1.38654 1.37516 1.15465 0.85142 0.77179 0.80449 0.77397 1.19696 1.21869 1.21834 1.22646 1.01472 0.94705 0.96787 1.22727 1.00900 0.96830 0.81126 1.48908 1.33058 1.34657 1.18789 1.20588 0.78467 0.83707 0.85584 1.90697 1.65996 1.66781 1.21158 1.21988 0.95242 0.95298 0.94773 1.59577 1.14348 1.33469 1.14230 1.23111 0.98814 0.89756 0.95316 1.21701 0.95431 0.98251 0.98658 1.21244 0.98477 0.93885 1.01341 1.20727 0.94401 0.99514 0.96583 1.21434 0.97794 0.96467 0.99225 1.21230 0.99503 0.92840 0.99002 1.20728 0.94209 1.00527 0.99364 1.19680 0.94973 0.91300 0.96847 1.21983 0.94398 0.87946 0.95593 0.92760 0.93519 0.90016 0.96843 0.97734 0.78589 0.93903 0.89258 0.92728 0.88153 0.87908 0.87072 0.88581 0.90013 0.90077 0.87891 0.88715 0.83960 0.83175 0.83646 0.86396 0.89714 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.51 8.04 71.98 0.58 -2.93 16 2 C -0.07 -2.15 0.67 -51.29 -0.03 -2.19 16 3 C 0.17 6.84 4.85 86.38 0.42 7.26 16 4 N -0.73 -36.74 5.12 -343.44 -1.76 -38.50 16 5 C -0.25 -13.86 9.99 84.03 0.84 -13.02 16 6 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 7 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 8 N -0.96 -57.80 13.06 21.65 0.28 -57.52 16 9 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 12 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 13 C -0.12 -3.17 5.72 31.69 0.18 -2.99 16 14 C 0.11 1.99 6.93 86.61 0.60 2.59 16 15 N -0.62 -15.43 3.29 -810.06 -2.67 -18.09 16 16 C 0.53 14.42 7.35 87.66 0.64 15.06 16 17 O -0.57 -20.47 16.31 -3.05 -0.05 -20.52 16 18 C 0.06 1.14 4.08 85.56 0.35 1.49 16 19 N -0.50 -11.51 4.59 -692.97 -3.18 -14.69 16 20 C 0.06 1.08 6.36 86.65 0.55 1.64 16 21 C -0.10 -1.38 6.92 30.67 0.21 -1.17 16 22 C -0.15 -2.46 6.23 -19.49 -0.12 -2.58 16 23 C -0.09 -1.25 10.03 22.21 0.22 -1.03 16 24 C -0.13 -1.62 10.06 22.30 0.22 -1.39 16 25 C -0.11 -1.57 10.02 22.21 0.22 -1.34 16 26 C -0.13 -2.48 10.04 22.47 0.23 -2.25 16 27 C 0.07 1.40 5.50 38.29 0.21 1.61 16 28 C 0.12 3.46 6.29 86.53 0.54 4.00 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.05 1.58 6.74 -2.39 -0.02 1.56 16 31 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.00 0.21 8.11 -2.39 -0.02 0.19 16 34 H 0.38 19.56 6.18 -92.71 -0.57 18.99 16 35 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 36 H 0.09 2.34 7.85 -2.39 -0.02 2.33 16 37 H 0.05 1.75 7.85 -2.39 -0.02 1.73 16 38 H 0.10 1.45 7.38 -2.39 -0.02 1.44 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.11 2.15 7.93 -2.39 -0.02 2.13 16 41 H 0.10 1.45 7.95 -2.39 -0.02 1.43 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 43 H 0.08 1.56 7.30 -2.39 -0.02 1.54 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 47 H 0.15 1.03 8.06 -2.91 -0.02 1.01 16 48 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 49 H 0.12 2.32 8.06 -2.92 -0.02 2.30 16 50 H 0.08 2.07 7.68 -2.39 -0.02 2.05 16 51 H 0.05 1.77 7.59 -2.38 -0.02 1.75 16 Total: -1.00 -73.64 405.76 1.33 -72.31 By element: Atomic # 1 Polarization: 29.00 SS G_CDS: 0.34 Total: 29.34 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 6.34 Total: -0.76 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -7.33 Total: -128.81 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.05 Total: -20.52 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -73.64 1.33 -72.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569694239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.086 kcal (2) G-P(sol) polarization free energy of solvation -73.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds