Wall clock time and date at job start Wed Apr 1 2020 01:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38234 * 119.61765 * 2 1 4 4 C 1.38625 * 119.16105 * 180.02562 * 3 2 1 5 5 C 1.38672 * 118.42099 * 359.97438 * 4 3 2 6 6 C 1.50703 * 120.41681 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.46630 * 90.00621 * 6 5 4 8 8 O 1.21273 * 120.00364 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99480 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99716 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47227 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.43799 * 59.17149 * 11 10 9 13 13 C 1.53147 * 109.43674 * 179.08600 * 11 10 9 14 14 C 1.53693 * 108.88593 * 66.08823 * 13 11 10 15 15 H 1.08994 * 112.59006 * 187.97088 * 14 13 11 16 16 C 1.54604 * 107.85856 * 312.29217 * 14 13 11 17 17 C 1.55899 * 104.89893 * 88.61779 * 16 14 13 18 18 C 1.54606 * 103.99715 * 0.02562 * 17 16 14 19 19 H 1.08997 * 112.19231 * 147.19284 * 18 17 16 20 20 C 1.53150 * 109.43515 * 299.26545 * 11 10 9 21 21 N 1.48292 * 107.23776 * 64.06911 * 14 13 11 22 22 C 1.36931 * 128.21309 * 107.40549 * 21 14 13 23 23 H 1.07999 * 120.00100 * 168.93873 * 22 21 14 24 24 C 1.38814 * 119.99681 * 348.93380 * 22 21 14 25 25 N 1.31618 * 120.00157 * 340.24777 * 24 22 21 26 26 Si 1.86801 * 119.99879 * 160.24685 * 24 22 21 27 27 H 1.48503 * 109.47303 * 84.99276 * 26 24 22 28 28 H 1.48499 * 109.47425 * 204.99874 * 26 24 22 29 29 H 1.48505 * 109.47134 * 324.99376 * 26 24 22 30 30 C 1.38184 * 119.16193 * 0.28242 * 5 4 3 31 31 N 1.31852 * 119.61779 * 180.02562 * 2 1 3 32 32 H 1.08995 * 109.47509 * 89.99937 * 1 2 3 33 33 H 1.09005 * 109.47051 * 210.00208 * 1 2 3 34 34 H 1.09007 * 109.47196 * 329.99939 * 1 2 3 35 35 H 1.07997 * 120.41870 * 359.97438 * 3 2 1 36 36 H 1.07998 * 120.78944 * 179.97438 * 4 3 2 37 37 H 1.08993 * 109.47213 * 330.00116 * 6 5 4 38 38 H 1.08996 * 109.46796 * 210.00053 * 6 5 4 39 39 H 0.96999 * 120.00158 * 359.97438 * 9 7 6 40 40 H 1.09002 * 109.47832 * 59.99530 * 10 9 7 41 41 H 1.09000 * 109.46971 * 299.99938 * 10 9 7 42 42 H 1.08999 * 109.56701 * 185.94788 * 13 11 10 43 43 H 1.08996 * 109.57016 * 306.30766 * 13 11 10 44 44 H 1.08997 * 110.38483 * 207.45025 * 16 14 13 45 45 H 1.09003 * 110.38890 * 329.81790 * 16 14 13 46 46 H 1.08991 * 110.92639 * 241.36262 * 17 16 14 47 47 H 1.09001 * 110.56220 * 118.50415 * 17 16 14 48 48 H 1.09001 * 109.56587 * 53.68412 * 20 11 10 49 49 H 1.08994 * 109.57124 * 174.05473 * 20 11 10 50 50 H 0.97001 * 119.99951 * 179.97438 * 25 24 22 51 51 H 1.08002 * 119.61736 * 179.70400 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1907 -0.0005 5 6 4.2266 -0.0341 -0.0005 6 6 5.7322 -0.0986 -0.0005 7 6 6.2340 -0.1202 1.4204 8 8 5.4466 -0.0861 2.3421 9 7 7.5579 -0.1764 1.6666 10 6 8.0457 -0.1980 3.0479 11 6 9.5743 -0.2634 3.0480 12 1 9.9744 0.6033 2.5217 13 6 10.0843 -0.2629 4.4920 14 6 9.6380 -1.5640 5.1777 15 1 9.8484 -1.5671 6.2471 16 6 8.1349 -1.7665 4.8777 17 6 8.0973 -2.5637 3.5385 18 6 9.5878 -2.7562 3.1759 19 1 9.7671 -3.6981 2.6575 20 6 10.0297 -1.5435 2.3413 21 7 10.3056 -2.6842 4.4717 22 6 11.3396 -3.4665 4.9117 23 1 11.6101 -4.3598 4.3683 24 6 12.0403 -3.1114 6.0562 25 7 11.9958 -1.8721 6.4972 26 14 13.0463 -4.3925 6.9706 27 1 14.3921 -4.4993 6.3518 28 1 13.1861 -3.9894 8.3930 29 1 12.3606 -5.7075 6.8940 30 6 3.4765 -1.1947 -0.0059 31 7 2.1586 -1.1462 -0.0005 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5139 34 1 -0.3634 0.8900 0.5139 35 1 1.6507 2.1374 -0.0004 36 1 4.1365 2.1140 -0.0010 37 1 6.1333 0.7749 -0.5143 38 1 6.0571 -1.0033 -0.5143 39 1 8.1877 -0.2033 0.9294 40 1 7.6450 -1.0721 3.5612 41 1 7.7203 0.7062 3.5623 42 1 11.1726 -0.2028 4.4948 43 1 9.6684 0.5916 5.0258 44 1 7.6630 -2.3419 5.6742 45 1 7.6383 -0.8035 4.7585 46 1 7.5878 -1.9947 2.7610 47 1 7.6135 -3.5300 3.6816 48 1 9.5749 -1.5959 1.3521 49 1 11.1155 -1.5417 2.2464 50 1 12.4851 -1.6241 7.2971 51 1 3.9754 -2.1526 -0.0108 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569860998.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:32 Heat of formation + Delta-G solvation = 90.243584 kcal Electronic energy + Delta-G solvation = -30751.320427 eV Core-core repulsion = 26846.842954 eV Total energy + Delta-G solvation = -3904.477473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.66211 -41.29727 -39.94675 -36.19474 -34.94411 -34.47724 -33.17403 -32.92670 -32.31135 -31.54641 -30.70422 -28.36194 -26.79752 -25.22037 -24.84218 -24.40671 -22.76921 -22.08197 -21.57829 -20.90952 -20.37841 -18.73008 -18.08511 -17.65337 -17.51827 -17.09245 -16.80214 -16.35572 -16.00412 -15.79729 -15.41686 -15.15277 -14.74062 -14.55634 -14.35204 -14.22209 -14.12394 -13.86235 -13.65853 -13.37719 -13.20700 -13.16138 -13.14362 -13.02917 -12.95513 -12.74463 -12.64458 -12.53346 -12.38021 -12.29480 -12.00997 -11.39641 -11.21156 -11.04828 -10.96149 -10.85671 -10.80083 -10.62139 -10.42730 -10.35713 -9.64844 -9.42959 -8.76817 -7.85345 -5.10273 0.17537 0.41155 1.45564 1.48737 1.56347 1.78388 2.35636 2.52363 2.92678 3.31586 3.44444 3.60573 3.76214 3.87842 3.93884 3.97678 4.00989 4.09245 4.10765 4.17758 4.25103 4.31407 4.40282 4.45888 4.56175 4.61976 4.63977 4.72654 4.73927 4.80041 4.80890 4.81449 4.91016 4.93071 5.01845 5.06577 5.12455 5.19671 5.20463 5.24685 5.32207 5.37199 5.39384 5.52786 5.55944 5.60629 5.63565 5.79013 5.85726 5.88905 6.26171 6.72851 7.09919 7.10245 7.41977 7.79610 8.60182 9.27343 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.027728 B = 0.002249 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.568254 B =12444.665460 C =12704.252420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.100 3.900 3 C -0.176 4.176 4 C -0.070 4.070 5 C -0.128 4.128 6 C -0.090 4.090 7 C 0.508 3.492 8 O -0.584 6.584 9 N -0.711 5.711 10 C 0.016 3.984 11 C -0.073 4.073 12 H 0.071 0.929 13 C -0.103 4.103 14 C 0.176 3.824 15 H 0.058 0.942 16 C -0.162 4.162 17 C -0.146 4.146 18 C 0.141 3.859 19 H 0.066 0.934 20 C -0.115 4.115 21 N -0.606 5.606 22 C -0.232 4.232 23 H 0.075 0.925 24 C -0.058 4.058 25 N -0.930 5.930 26 Si 0.961 3.039 27 H -0.286 1.286 28 H -0.297 1.297 29 H -0.278 1.278 30 C 0.097 3.903 31 N -0.516 5.516 32 H 0.089 0.911 33 H 0.067 0.933 34 H 0.092 0.908 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.134 0.866 38 H 0.134 0.866 39 H 0.411 0.589 40 H 0.179 0.821 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.046 0.954 44 H 0.045 0.955 45 H 0.104 0.896 46 H 0.119 0.881 47 H 0.052 0.948 48 H 0.087 0.913 49 H 0.039 0.961 50 H 0.245 0.755 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.726 8.123 -18.421 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.037 4.037 3 C -0.195 4.195 4 C -0.095 4.095 5 C -0.131 4.131 6 C -0.130 4.130 7 C 0.295 3.705 8 O -0.464 6.464 9 N -0.364 5.364 10 C -0.104 4.104 11 C -0.092 4.092 12 H 0.090 0.910 13 C -0.143 4.143 14 C 0.069 3.931 15 H 0.076 0.924 16 C -0.200 4.200 17 C -0.184 4.184 18 C 0.035 3.965 19 H 0.084 0.916 20 C -0.155 4.155 21 N -0.328 5.328 22 C -0.361 4.361 23 H 0.092 0.908 24 C -0.253 4.253 25 N -0.577 5.577 26 Si 0.790 3.210 27 H -0.213 1.213 28 H -0.224 1.224 29 H -0.204 1.204 30 C -0.060 4.060 31 N -0.226 5.226 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.111 0.889 35 H 0.176 0.824 36 H 0.170 0.830 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.248 0.752 40 H 0.194 0.806 41 H 0.059 0.941 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.122 0.878 46 H 0.137 0.863 47 H 0.071 0.929 48 H 0.106 0.894 49 H 0.058 0.942 50 H 0.054 0.946 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.548 7.329 -17.588 25.903 hybrid contribution 2.019 0.272 0.919 2.235 sum -15.529 7.601 -16.669 24.016 Atomic orbital electron populations 1.20766 0.87253 1.03930 1.03858 1.21829 0.98444 0.88590 0.94811 1.22232 0.95030 0.99887 1.02348 1.21798 0.94897 0.98423 0.94421 1.20489 0.96401 0.94401 1.01786 1.20662 0.90833 1.08405 0.93110 1.21046 0.81998 0.75439 0.91983 1.90724 1.56374 1.51301 1.48041 1.46168 1.06960 1.73914 1.09339 1.24730 0.95001 1.06756 0.83924 1.21110 0.93812 0.98054 0.96230 0.91047 1.21823 0.99760 0.97669 0.95082 1.21319 0.88272 0.87219 0.96318 0.92363 1.23740 0.98525 1.00691 0.97086 1.23569 0.97821 0.99608 0.97417 1.21756 0.90929 0.96517 0.87324 0.91563 1.22087 0.99815 0.95053 0.98496 1.45398 1.36263 1.36988 1.14116 1.19209 1.07318 1.01855 1.07692 0.90760 1.25391 1.01022 0.97563 1.01316 1.70136 1.46451 1.16301 1.24857 0.85377 0.78502 0.79382 0.77724 1.21340 1.22397 1.20355 1.22862 0.89334 0.98906 0.94876 1.67509 1.10566 1.30654 1.13905 0.89230 0.91422 0.88927 0.82381 0.83010 0.84763 0.84800 0.75219 0.80602 0.94127 0.94204 0.93488 0.93644 0.87840 0.86343 0.92906 0.89441 0.94198 0.94590 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.17 71.23 0.72 -0.64 16 2 C 0.10 2.02 6.78 42.55 0.29 2.31 16 3 C -0.18 -2.95 9.74 22.36 0.22 -2.73 16 4 C -0.07 -1.19 9.86 22.47 0.22 -0.97 16 5 C -0.13 -2.37 4.39 -19.77 -0.09 -2.46 16 6 C -0.09 -1.16 5.86 29.10 0.17 -0.99 16 7 C 0.51 11.04 7.59 87.66 0.67 11.70 16 8 O -0.58 -18.72 16.03 -3.01 -0.05 -18.76 16 9 N -0.71 -14.26 4.39 -463.07 -2.03 -16.30 16 10 C 0.02 0.45 2.66 86.38 0.23 0.68 16 11 C -0.07 -2.26 2.76 -10.70 -0.03 -2.29 16 12 H 0.07 1.96 8.14 -2.38 -0.02 1.95 16 13 C -0.10 -4.23 5.33 30.88 0.16 -4.07 16 14 C 0.18 8.04 3.16 45.43 0.14 8.18 16 15 H 0.06 3.18 6.47 -2.39 -0.02 3.16 16 16 C -0.16 -6.11 5.75 32.14 0.18 -5.93 16 17 C -0.15 -4.86 5.79 32.14 0.19 -4.67 16 18 C 0.14 5.29 4.28 45.43 0.19 5.48 16 19 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 20 C -0.12 -3.59 5.27 30.88 0.16 -3.43 16 21 N -0.61 -29.26 2.82 -637.24 -1.80 -31.06 16 22 C -0.23 -12.60 10.33 84.03 0.87 -11.74 16 23 H 0.07 3.93 7.90 -2.91 -0.02 3.91 16 24 C -0.06 -3.26 5.30 84.86 0.45 -2.81 16 25 N -0.93 -54.15 11.00 21.65 0.24 -53.91 16 26 Si 0.96 45.45 29.60 68.60 2.03 47.48 16 27 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 28 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 29 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 30 C 0.10 2.12 10.86 84.67 0.92 3.04 16 31 N -0.52 -12.65 10.27 -183.88 -1.89 -14.54 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.09 0.86 8.08 -2.38 -0.02 0.84 16 35 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 36 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 37 H 0.13 0.91 8.09 -2.39 -0.02 0.89 16 38 H 0.13 1.01 8.09 -2.39 -0.02 0.99 16 39 H 0.41 5.66 7.37 -92.71 -0.68 4.98 16 40 H 0.18 5.48 1.12 -108.72 -0.12 5.36 16 41 H 0.04 1.23 7.98 -2.39 -0.02 1.21 16 42 H 0.04 1.93 8.07 -2.39 -0.02 1.91 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.10 3.58 4.83 -2.39 -0.01 3.57 16 46 H 0.12 3.38 4.04 -2.39 -0.01 3.37 16 47 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.09 1.94 6.76 -2.39 -0.02 1.93 16 49 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 51 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -74.18 387.75 2.32 -71.86 By element: Atomic # 1 Polarization: 26.41 SS G_CDS: 0.15 Total: 26.55 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 5.68 Total: -11.33 kcal Atomic # 7 Polarization: -110.31 SS G_CDS: -5.48 Total: -115.79 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.76 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.18 2.32 -71.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569860998.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.105 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds