Wall clock time and date at job start Wed Apr 1 2020 01:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38232 * 119.61590 * 2 1 4 4 C 1.38632 * 119.16320 * 179.97438 * 3 2 1 5 5 C 1.38681 * 118.41797 * 359.97438 * 4 3 2 6 6 C 1.50690 * 120.41535 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47258 * 90.00352 * 6 5 4 8 8 O 1.21282 * 119.99874 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00133 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00154 * 179.97438 * 9 7 6 11 11 C 1.53003 * 115.55379 * 179.64188 * 10 9 7 12 12 C 1.53030 * 109.45905 * 85.64976 * 11 10 9 13 13 C 1.53202 * 109.31181 * 178.61492 * 12 11 10 14 14 N 1.46924 * 108.76967 * 54.63615 * 13 12 11 15 15 C 1.36943 * 120.62831 * 126.37550 * 14 13 12 16 16 H 1.07995 * 119.99619 * 207.69639 * 15 14 13 17 17 C 1.38808 * 120.00068 * 27.69099 * 15 14 13 18 18 N 1.31620 * 120.00063 * 17.35510 * 17 15 14 19 19 Si 1.86798 * 120.00152 * 197.35076 * 17 15 14 20 20 H 1.48504 * 109.46910 * 90.00131 * 19 17 15 21 21 H 1.48497 * 109.47344 * 209.99997 * 19 17 15 22 22 H 1.48493 * 109.47111 * 330.00837 * 19 17 15 23 23 C 1.46920 * 118.74063 * 306.38802 * 14 13 12 24 24 C 1.53041 * 109.45467 * 325.58015 * 11 10 9 25 25 C 1.53006 * 117.49591 * 33.93305 * 10 9 7 26 26 C 1.53001 * 117.49835 * 325.31280 * 10 9 7 27 27 C 1.38178 * 119.16291 * 0.28164 * 5 4 3 28 28 N 1.31858 * 119.62266 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47499 * 90.00786 * 1 2 3 30 30 H 1.09002 * 109.46852 * 210.00427 * 1 2 3 31 31 H 1.08992 * 109.47551 * 330.00186 * 1 2 3 32 32 H 1.07995 * 120.41655 * 359.97438 * 3 2 1 33 33 H 1.07990 * 120.79202 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47765 * 329.99991 * 6 5 4 35 35 H 1.09003 * 109.46999 * 210.00087 * 6 5 4 36 36 H 0.97003 * 119.99981 * 359.72602 * 9 7 6 37 37 H 1.09006 * 109.45597 * 205.61510 * 11 10 9 38 38 H 1.08997 * 109.50289 * 298.56519 * 12 11 10 39 39 H 1.09009 * 109.50003 * 58.66974 * 12 11 10 40 40 H 1.09004 * 109.58401 * 294.85253 * 13 12 11 41 41 H 1.08994 * 109.58609 * 174.42278 * 13 12 11 42 42 H 0.97005 * 120.00089 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.58995 * 293.82336 * 23 14 13 44 44 H 1.09005 * 109.58841 * 173.40266 * 23 14 13 45 45 H 1.08991 * 109.50503 * 301.33930 * 24 11 10 46 46 H 1.08997 * 109.49698 * 61.40747 * 24 11 10 47 47 H 1.08999 * 117.49626 * 359.97438 * 25 10 9 48 48 H 1.08994 * 117.49901 * 145.02213 * 25 10 9 49 49 H 1.08996 * 117.50033 * 214.97980 * 26 10 9 50 50 H 1.09008 * 117.49851 * 359.97233 * 26 10 9 51 51 H 1.08004 * 119.61852 * 179.70298 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1908 0.0005 5 6 4.2266 -0.0341 0.0016 6 6 5.7322 -0.0985 0.0028 7 6 6.2330 -0.1194 1.4241 8 8 5.4449 -0.0849 2.3453 9 7 7.5566 -0.1765 1.6714 10 6 8.0434 -0.1962 3.0530 11 6 9.5629 -0.2705 3.2163 12 6 10.1515 1.1408 3.1575 13 6 11.6688 1.0656 3.3560 14 7 12.2296 0.1362 2.3659 15 6 13.2515 0.5272 1.5423 16 1 13.3664 0.0706 0.5704 17 6 14.1394 1.5103 1.9567 18 7 14.2254 1.8242 3.2321 19 14 15.2123 2.3879 0.7045 20 1 14.5022 3.5910 0.2008 21 1 16.4873 2.7980 1.3458 22 1 15.5001 1.4725 -0.4288 23 6 11.6730 -1.2205 2.2759 24 6 10.1558 -1.1198 2.0896 25 6 7.1845 -0.9164 4.0944 26 6 7.2602 0.6117 4.0897 27 6 3.4767 -1.1946 -0.0038 28 7 2.1587 -1.1462 0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6506 2.1373 -0.0004 33 1 4.1365 2.1141 0.0010 34 1 6.1337 0.7749 -0.5111 35 1 6.0575 -1.0035 -0.5104 36 1 8.1867 -0.2081 0.9346 37 1 9.8030 -0.7243 4.1779 38 1 9.9333 1.5860 2.1869 39 1 9.7115 1.7517 3.9458 40 1 11.8884 0.7052 4.3610 41 1 12.1049 2.0548 3.2167 42 1 14.8462 2.5110 3.5217 43 1 11.8931 -1.7673 3.1928 44 1 12.1121 -1.7399 1.4241 45 1 9.7187 -2.1178 2.1176 46 1 9.9369 -0.6536 1.1290 47 1 6.2570 -1.3751 3.7517 48 1 7.7018 -1.4434 4.8961 49 1 7.8273 1.0901 4.8881 50 1 6.3829 1.1584 3.7436 51 1 3.9756 -2.1525 -0.0079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571670581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:56 Heat of formation + Delta-G solvation = 40.463945 kcal Electronic energy + Delta-G solvation = -29990.505003 eV Core-core repulsion = 26083.868922 eV Total energy + Delta-G solvation = -3906.636080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.86352 -40.12634 -38.05618 -36.07235 -34.26823 -33.02165 -32.79693 -32.51282 -30.37670 -30.06968 -29.71144 -26.42934 -25.52853 -23.80371 -22.95206 -22.63180 -22.11850 -21.62930 -20.67638 -19.84846 -18.86880 -17.54756 -16.96054 -16.79886 -16.46035 -15.78437 -15.17314 -14.99598 -14.87089 -14.75805 -14.29495 -13.89799 -13.71518 -13.55432 -13.45833 -13.42077 -13.23451 -12.94721 -12.84201 -12.64038 -12.59161 -12.40805 -12.31626 -11.82071 -11.51171 -11.32209 -11.09320 -10.94325 -10.76422 -10.70502 -10.40707 -10.27763 -10.09603 -10.03003 -9.96133 -9.73913 -9.66292 -9.56691 -9.36791 -8.97444 -8.53010 -8.41951 -6.70674 -5.81673 -3.24058 0.84266 1.08306 2.51419 3.05150 3.34806 3.41936 3.43069 3.59946 4.04269 4.11107 4.38846 4.45802 4.46570 4.65276 4.65578 4.74025 4.84071 5.00507 5.12686 5.15261 5.22754 5.26136 5.28323 5.31823 5.34883 5.41150 5.52299 5.57451 5.68831 5.72615 5.74955 5.88441 5.90769 5.95787 6.01673 6.08088 6.17389 6.27943 6.43663 6.47857 6.48207 6.53900 6.62665 6.71751 6.72720 6.80153 6.91270 7.34846 7.51827 7.63647 7.76508 7.77704 8.19226 8.42113 9.18461 9.82098 10.38597 11.26628 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.002201 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.384508 B =12717.638592 C =13297.659344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.122 3.878 3 C -0.171 4.171 4 C -0.058 4.058 5 C -0.119 4.119 6 C -0.100 4.100 7 C 0.512 3.488 8 O -0.531 6.531 9 N -0.689 5.689 10 C 0.109 3.891 11 C -0.042 4.042 12 C -0.132 4.132 13 C 0.170 3.830 14 N -0.592 5.592 15 C -0.252 4.252 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.902 3.098 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.145 3.855 24 C -0.125 4.125 25 C -0.180 4.180 26 C -0.176 4.176 27 C 0.119 3.881 28 N -0.485 5.485 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.407 0.593 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.017 0.983 41 H 0.088 0.912 42 H 0.254 0.746 43 H 0.018 0.982 44 H 0.054 0.946 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.104 0.896 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.103 0.897 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.090 -2.849 -6.092 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.191 4.191 4 C -0.084 4.084 5 C -0.121 4.121 6 C -0.141 4.141 7 C 0.298 3.702 8 O -0.408 6.408 9 N -0.339 5.339 10 C 0.022 3.978 11 C -0.061 4.061 12 C -0.171 4.171 13 C 0.044 3.956 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.732 3.268 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.205 1.205 23 C 0.018 3.982 24 C -0.165 4.165 25 C -0.218 4.218 26 C -0.214 4.214 27 C -0.039 4.039 28 N -0.194 5.194 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.244 0.756 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.035 0.965 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.036 0.964 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.122 0.878 48 H 0.108 0.892 49 H 0.111 0.889 50 H 0.121 0.879 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -22.992 -3.485 -5.377 23.869 hybrid contribution 1.477 1.352 -0.875 2.185 sum -21.516 -2.133 -6.252 22.507 Atomic orbital electron populations 1.20699 0.88953 1.03464 1.02935 1.21292 0.97005 0.88458 0.94820 1.21904 0.94722 0.99251 1.03187 1.21437 0.94427 0.97759 0.94746 1.20237 0.95129 0.94569 1.02167 1.20615 0.92320 1.05781 0.95365 1.20454 0.82275 0.76469 0.91003 1.90687 1.55530 1.48962 1.45650 1.45444 1.06669 1.73788 1.08024 1.20941 0.92937 1.05390 0.78539 1.20780 0.87342 0.98130 0.99841 1.22236 1.00005 0.94114 1.00725 1.20800 0.87208 0.96618 0.90982 1.44068 1.38515 1.06944 1.41959 1.19183 1.04109 1.19415 0.95489 0.91691 1.25040 0.97369 1.01786 0.95514 1.70035 1.38437 1.33260 1.12905 0.86301 0.79719 0.79980 0.80829 1.21491 1.21791 1.20460 1.20888 0.90401 0.88304 0.98563 1.22023 0.98994 0.98012 0.97465 1.23427 1.02312 0.95462 1.00613 1.23312 1.02622 0.94535 1.00915 1.22547 0.89221 0.97777 0.94324 1.67518 1.09725 1.29375 1.12791 0.90499 0.90505 0.90776 0.84887 0.84959 0.87640 0.87541 0.75632 0.90387 0.92796 0.93107 0.96475 0.89416 0.93632 0.96428 0.92763 0.92877 0.92679 0.87783 0.89172 0.88928 0.87898 0.83023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.17 36.00 0.37 -0.36 16 2 C 0.12 1.24 6.78 -82.59 -0.56 0.69 16 3 C -0.17 -1.57 9.74 -39.44 -0.38 -1.96 16 4 C -0.06 -0.56 9.86 -39.27 -0.39 -0.95 16 5 C -0.12 -1.20 4.39 -104.49 -0.46 -1.66 16 6 C -0.10 -0.85 5.86 -29.04 -0.17 -1.02 16 7 C 0.51 6.12 7.53 -10.99 -0.08 6.04 16 8 O -0.53 -8.07 11.51 5.56 0.06 -8.01 16 9 N -0.69 -8.31 5.39 -47.60 -0.26 -8.56 16 10 C 0.11 1.52 2.48 -131.81 -0.33 1.19 16 11 C -0.04 -0.65 2.28 -90.58 -0.21 -0.86 16 12 C -0.13 -2.36 5.22 -26.61 -0.14 -2.50 16 13 C 0.17 3.88 5.31 -3.71 -0.02 3.86 16 14 N -0.59 -14.11 2.99 -172.32 -0.52 -14.63 16 15 C -0.25 -6.68 9.59 -15.06 -0.14 -6.82 16 16 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 17 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 18 N -0.90 -25.68 11.19 55.49 0.62 -25.06 16 19 Si 0.90 21.21 29.59 -169.99 -5.03 16.18 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 C 0.15 2.85 6.52 -3.71 -0.02 2.82 16 24 C -0.13 -1.95 4.83 -26.61 -0.13 -2.07 16 25 C -0.18 -2.52 9.36 -26.73 -0.25 -2.77 16 26 C -0.18 -2.53 8.91 -26.73 -0.24 -2.77 16 27 C 0.12 1.30 10.86 -17.55 -0.19 1.11 16 28 N -0.48 -5.81 10.27 -9.47 -0.10 -5.91 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.11 0.71 8.10 -51.93 -0.42 0.29 16 35 H 0.11 0.67 8.09 -51.93 -0.42 0.25 16 36 H 0.41 4.36 6.66 -40.82 -0.27 4.09 16 37 H 0.08 1.26 7.90 -51.93 -0.41 0.85 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.86 7.25 -51.92 -0.38 0.48 16 40 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 2.28 6.04 -51.93 -0.31 1.96 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.82 6.50 -51.93 -0.34 0.48 16 47 H 0.10 1.58 6.34 -51.93 -0.33 1.26 16 48 H 0.09 1.18 8.05 -51.93 -0.42 0.76 16 49 H 0.09 1.29 7.60 -51.93 -0.39 0.89 16 50 H 0.10 1.61 6.41 -51.92 -0.33 1.28 16 51 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 401.01 15.07 6.04 6.04 Total: -1.00 -32.00 401.01 -10.81 -42.81 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -8.21 Total: 5.21 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -3.43 Total: -8.08 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.25 Total: -54.16 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.06 Total: -8.01 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.00 -10.81 -42.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571670581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.277 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds