Wall clock time and date at job start Wed Apr 1 2020 01:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38232 * 119.61590 * 2 1 4 4 C 1.38632 * 119.16320 * 179.97438 * 3 2 1 5 5 C 1.38681 * 118.41797 * 359.97438 * 4 3 2 6 6 C 1.50690 * 120.41535 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47258 * 90.00352 * 6 5 4 8 8 O 1.21282 * 119.99874 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00133 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00154 * 179.97438 * 9 7 6 11 11 C 1.53003 * 115.55379 * 179.64188 * 10 9 7 12 12 C 1.53030 * 109.45905 * 85.64976 * 11 10 9 13 13 C 1.53202 * 109.31181 * 178.61492 * 12 11 10 14 14 N 1.46924 * 108.76967 * 54.63615 * 13 12 11 15 15 C 1.36943 * 120.62831 * 126.37550 * 14 13 12 16 16 H 1.07995 * 119.99619 * 207.69639 * 15 14 13 17 17 C 1.38808 * 120.00068 * 27.69099 * 15 14 13 18 18 N 1.31620 * 120.00063 * 17.35510 * 17 15 14 19 19 Si 1.86798 * 120.00152 * 197.35076 * 17 15 14 20 20 H 1.48504 * 109.46910 * 90.00131 * 19 17 15 21 21 H 1.48497 * 109.47344 * 209.99997 * 19 17 15 22 22 H 1.48493 * 109.47111 * 330.00837 * 19 17 15 23 23 C 1.46920 * 118.74063 * 306.38802 * 14 13 12 24 24 C 1.53041 * 109.45467 * 325.58015 * 11 10 9 25 25 C 1.53006 * 117.49591 * 33.93305 * 10 9 7 26 26 C 1.53001 * 117.49835 * 325.31280 * 10 9 7 27 27 C 1.38178 * 119.16291 * 0.28164 * 5 4 3 28 28 N 1.31858 * 119.62266 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47499 * 90.00786 * 1 2 3 30 30 H 1.09002 * 109.46852 * 210.00427 * 1 2 3 31 31 H 1.08992 * 109.47551 * 330.00186 * 1 2 3 32 32 H 1.07995 * 120.41655 * 359.97438 * 3 2 1 33 33 H 1.07990 * 120.79202 * 180.02562 * 4 3 2 34 34 H 1.09003 * 109.47765 * 329.99991 * 6 5 4 35 35 H 1.09003 * 109.46999 * 210.00087 * 6 5 4 36 36 H 0.97003 * 119.99981 * 359.72602 * 9 7 6 37 37 H 1.09006 * 109.45597 * 205.61510 * 11 10 9 38 38 H 1.08997 * 109.50289 * 298.56519 * 12 11 10 39 39 H 1.09009 * 109.50003 * 58.66974 * 12 11 10 40 40 H 1.09004 * 109.58401 * 294.85253 * 13 12 11 41 41 H 1.08994 * 109.58609 * 174.42278 * 13 12 11 42 42 H 0.97005 * 120.00089 * 179.97438 * 18 17 15 43 43 H 1.08995 * 109.58995 * 293.82336 * 23 14 13 44 44 H 1.09005 * 109.58841 * 173.40266 * 23 14 13 45 45 H 1.08991 * 109.50503 * 301.33930 * 24 11 10 46 46 H 1.08997 * 109.49698 * 61.40747 * 24 11 10 47 47 H 1.08999 * 117.49626 * 359.97438 * 25 10 9 48 48 H 1.08994 * 117.49901 * 145.02213 * 25 10 9 49 49 H 1.08996 * 117.50033 * 214.97980 * 26 10 9 50 50 H 1.09008 * 117.49851 * 359.97233 * 26 10 9 51 51 H 1.08004 * 119.61852 * 179.70298 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1901 1.2017 0.0000 4 6 3.5763 1.1908 0.0005 5 6 4.2266 -0.0341 0.0016 6 6 5.7322 -0.0985 0.0028 7 6 6.2330 -0.1194 1.4241 8 8 5.4449 -0.0849 2.3453 9 7 7.5566 -0.1765 1.6714 10 6 8.0434 -0.1962 3.0530 11 6 9.5629 -0.2705 3.2163 12 6 10.1515 1.1408 3.1575 13 6 11.6688 1.0656 3.3560 14 7 12.2296 0.1362 2.3659 15 6 13.2515 0.5272 1.5423 16 1 13.3664 0.0706 0.5704 17 6 14.1394 1.5103 1.9567 18 7 14.2254 1.8242 3.2321 19 14 15.2123 2.3879 0.7045 20 1 14.5022 3.5910 0.2008 21 1 16.4873 2.7980 1.3458 22 1 15.5001 1.4725 -0.4288 23 6 11.6730 -1.2205 2.2759 24 6 10.1558 -1.1198 2.0896 25 6 7.1845 -0.9164 4.0944 26 6 7.2602 0.6117 4.0897 27 6 3.4767 -1.1946 -0.0038 28 7 2.1587 -1.1462 0.0005 29 1 -0.3634 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.6506 2.1373 -0.0004 33 1 4.1365 2.1141 0.0010 34 1 6.1337 0.7749 -0.5111 35 1 6.0575 -1.0035 -0.5104 36 1 8.1867 -0.2081 0.9346 37 1 9.8030 -0.7243 4.1779 38 1 9.9333 1.5860 2.1869 39 1 9.7115 1.7517 3.9458 40 1 11.8884 0.7052 4.3610 41 1 12.1049 2.0548 3.2167 42 1 14.8462 2.5110 3.5217 43 1 11.8931 -1.7673 3.1928 44 1 12.1121 -1.7399 1.4241 45 1 9.7187 -2.1178 2.1176 46 1 9.9369 -0.6536 1.1290 47 1 6.2570 -1.3751 3.7517 48 1 7.7018 -1.4434 4.8961 49 1 7.8273 1.0901 4.8881 50 1 6.3829 1.1584 3.7436 51 1 3.9756 -2.1525 -0.0079 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571670581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:58:55 Heat of formation + Delta-G solvation = 22.367406 kcal Electronic energy + Delta-G solvation = -29991.289727 eV Core-core repulsion = 26083.868922 eV Total energy + Delta-G solvation = -3907.420805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.75756 -41.00812 -39.36100 -37.46539 -35.05640 -34.53320 -33.98992 -33.21508 -32.07573 -31.42578 -30.66368 -27.47253 -26.97484 -24.59679 -24.37029 -24.06747 -23.08648 -22.82950 -21.65462 -21.21503 -20.17529 -18.77742 -18.37016 -17.67948 -17.19855 -16.91246 -16.62970 -16.00679 -15.90938 -15.71089 -15.49136 -15.26595 -15.03782 -14.95504 -14.69220 -14.50670 -14.31301 -14.15010 -13.89947 -13.84062 -13.30972 -13.20576 -13.08986 -12.99653 -12.94272 -12.67615 -12.55682 -12.47841 -12.26725 -12.07880 -11.91538 -11.88553 -11.70132 -11.52788 -11.11305 -10.95895 -10.79211 -10.57930 -10.50451 -10.40264 -9.69246 -9.53257 -8.65140 -7.84415 -5.29062 0.12826 0.36397 1.48483 1.49816 1.58241 1.61185 2.13717 2.53434 2.85192 2.97864 3.29593 3.39574 3.60818 3.66301 3.73085 3.77200 3.83662 4.02408 4.02970 4.04840 4.06373 4.28169 4.36948 4.42098 4.49480 4.56362 4.59296 4.68256 4.70625 4.74548 4.77583 4.78932 4.82074 4.88355 4.96042 5.06033 5.06635 5.16900 5.20395 5.21240 5.27335 5.28171 5.32833 5.35030 5.40174 5.54774 5.65357 5.70183 5.80306 5.81037 6.42250 6.60533 7.05149 7.18164 7.28907 7.90507 8.41550 9.21668 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.019421 B = 0.002201 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.384508 B =12717.638592 C =13297.659344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.103 3.897 3 C -0.175 4.175 4 C -0.070 4.070 5 C -0.127 4.127 6 C -0.092 4.092 7 C 0.512 3.488 8 O -0.565 6.565 9 N -0.685 5.685 10 C 0.117 3.883 11 C -0.033 4.033 12 C -0.115 4.115 13 C 0.176 3.824 14 N -0.609 5.609 15 C -0.256 4.256 16 H 0.070 0.930 17 C -0.054 4.054 18 N -0.937 5.937 19 Si 0.964 3.036 20 H -0.286 1.286 21 H -0.300 1.300 22 H -0.267 1.267 23 C 0.139 3.861 24 C -0.112 4.112 25 C -0.173 4.173 26 C -0.179 4.179 27 C 0.100 3.900 28 N -0.515 5.515 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.158 0.842 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.415 0.585 37 H 0.074 0.926 38 H 0.053 0.947 39 H 0.060 0.940 40 H -0.007 1.007 41 H 0.051 0.949 42 H 0.248 0.752 43 H 0.011 0.989 44 H 0.057 0.943 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.091 0.909 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.321 -3.006 -7.864 24.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.034 4.034 3 C -0.194 4.194 4 C -0.095 4.095 5 C -0.129 4.129 6 C -0.132 4.132 7 C 0.300 3.700 8 O -0.445 6.445 9 N -0.336 5.336 10 C 0.029 3.971 11 C -0.052 4.052 12 C -0.154 4.154 13 C 0.050 3.950 14 N -0.332 5.332 15 C -0.387 4.387 16 H 0.088 0.912 17 C -0.249 4.249 18 N -0.583 5.583 19 Si 0.793 3.207 20 H -0.213 1.213 21 H -0.227 1.227 22 H -0.192 1.192 23 C 0.014 3.986 24 C -0.151 4.151 25 C -0.211 4.211 26 C -0.217 4.217 27 C -0.057 4.057 28 N -0.225 5.225 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.176 0.824 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.254 0.746 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.011 0.989 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.029 0.971 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.112 0.888 48 H 0.118 0.882 49 H 0.113 0.887 50 H 0.109 0.891 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -24.238 -3.671 -7.184 25.546 hybrid contribution 1.831 1.362 -0.284 2.299 sum -22.408 -2.309 -7.468 23.732 Atomic orbital electron populations 1.20767 0.87146 1.04006 1.03890 1.21827 0.98464 0.88497 0.94622 1.22228 0.94911 0.99973 1.02320 1.21780 0.94965 0.98365 0.94430 1.20408 0.95992 0.94460 1.02040 1.20645 0.91194 1.08158 0.93153 1.21012 0.81685 0.75203 0.92088 1.90682 1.56265 1.50400 1.47111 1.45397 1.07115 1.73778 1.07320 1.20639 0.91561 1.05155 0.79716 1.20611 0.88417 0.96278 0.99866 1.21988 0.96308 0.96158 1.00963 1.20587 0.90228 0.94500 0.89650 1.44327 1.38407 1.08842 1.41646 1.19537 1.04197 1.18974 0.95956 0.91242 1.25783 0.99161 1.02980 0.97010 1.70194 1.39486 1.33946 1.14676 0.85305 0.77607 0.78897 0.78885 1.21286 1.22657 1.19163 1.21071 0.93102 0.86102 0.98344 1.21872 0.95643 0.99688 0.97877 1.23377 1.01830 0.95122 1.00796 1.23259 1.02341 0.94805 1.01331 1.22825 0.89312 0.98734 0.94812 1.67521 1.10455 1.30576 1.13910 0.89257 0.91245 0.88924 0.82450 0.83379 0.85331 0.84959 0.74606 0.90810 0.92823 0.92167 0.98927 0.93014 0.94301 0.97145 0.92420 0.90129 0.91455 0.88808 0.88203 0.88675 0.89068 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 10.17 71.23 0.72 -0.57 16 2 C 0.10 2.01 6.78 42.55 0.29 2.30 16 3 C -0.17 -2.93 9.74 22.36 0.22 -2.71 16 4 C -0.07 -1.22 9.86 22.47 0.22 -1.00 16 5 C -0.13 -2.34 4.39 -19.78 -0.09 -2.42 16 6 C -0.09 -1.28 5.86 29.10 0.17 -1.11 16 7 C 0.51 11.03 7.53 87.66 0.66 11.69 16 8 O -0.57 -16.41 11.51 -3.03 -0.03 -16.44 16 9 N -0.68 -14.57 5.39 -422.91 -2.28 -16.85 16 10 C 0.12 3.00 2.48 3.61 0.01 3.01 16 11 C -0.03 -0.95 2.28 -10.77 -0.02 -0.97 16 12 C -0.12 -4.03 5.22 30.67 0.16 -3.87 16 13 C 0.18 8.18 5.31 86.37 0.46 8.64 16 14 N -0.61 -28.94 2.99 -699.10 -2.09 -31.03 16 15 C -0.26 -13.52 9.59 84.03 0.81 -12.72 16 16 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16 17 C -0.05 -2.96 4.91 84.86 0.42 -2.55 16 18 N -0.94 -54.77 11.19 21.65 0.24 -54.53 16 19 Si 0.96 43.86 29.59 68.60 2.03 45.89 16 20 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 23 C 0.14 5.27 6.52 86.36 0.56 5.84 16 24 C -0.11 -3.15 4.83 30.67 0.15 -3.00 16 25 C -0.17 -4.55 9.36 30.60 0.29 -4.26 16 26 C -0.18 -4.91 8.91 30.60 0.27 -4.63 16 27 C 0.10 2.10 10.86 84.67 0.92 3.02 16 28 N -0.51 -12.11 10.27 -183.88 -1.89 -13.99 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 0.80 8.08 -2.39 -0.02 0.79 16 32 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 33 H 0.15 2.00 8.06 -2.92 -0.02 1.97 16 34 H 0.13 1.24 8.10 -2.39 -0.02 1.22 16 35 H 0.13 1.18 8.09 -2.39 -0.02 1.16 16 36 H 0.42 7.40 6.66 -92.71 -0.62 6.78 16 37 H 0.07 2.25 7.90 -2.38 -0.02 2.24 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.06 1.98 7.25 -2.38 -0.02 1.97 16 40 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 41 H 0.05 2.77 6.04 -2.39 -0.01 2.76 16 42 H 0.25 14.13 8.31 -92.70 -0.77 13.36 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.06 2.12 7.93 -2.38 -0.02 2.10 16 45 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.07 1.77 6.50 -2.39 -0.02 1.75 16 47 H 0.09 2.73 6.34 -2.39 -0.02 2.71 16 48 H 0.10 2.42 8.05 -2.39 -0.02 2.40 16 49 H 0.09 2.53 7.60 -2.39 -0.02 2.51 16 50 H 0.09 2.76 6.41 -2.38 -0.02 2.75 16 51 H 0.16 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -70.82 401.01 2.50 -68.32 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.31 Total: 23.96 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 6.21 Total: -5.32 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -6.02 Total: -116.40 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.03 Total: -16.44 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.82 2.50 -68.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571670581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.688 kcal (2) G-P(sol) polarization free energy of solvation -70.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds