Wall clock time and date at job start Wed Apr 1 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38171 * 119.55239 * 2 1 4 4 C 1.39794 * 119.00038 * 179.97438 * 3 2 1 5 5 C 1.48154 * 120.92218 * 179.72445 * 4 3 2 6 6 O 1.21511 * 119.99714 * 314.77472 * 5 4 3 7 7 N 1.34780 * 119.99930 * 134.77212 * 5 4 3 8 8 C 1.46930 * 120.62851 * 3.90136 * 7 5 4 9 9 C 1.52756 * 109.00462 * 233.58165 * 8 7 5 10 10 C 1.53041 * 109.38749 * 305.58992 * 9 8 7 11 11 N 1.46496 * 109.46324 * 181.26225 * 10 9 8 12 12 C 1.36943 * 119.99947 * 299.93048 * 11 10 9 13 13 H 1.08002 * 119.99669 * 19.76740 * 12 11 10 14 14 C 1.38803 * 119.99938 * 199.76662 * 12 11 10 15 15 N 1.31622 * 120.00498 * 20.00940 * 14 12 11 16 16 Si 1.86800 * 120.00026 * 200.01221 * 14 12 11 17 17 H 1.48502 * 109.47043 * 60.00033 * 16 14 12 18 18 H 1.48497 * 109.47248 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47007 * 300.00056 * 16 14 12 20 20 C 1.46503 * 120.00150 * 119.93350 * 11 10 9 21 21 C 1.52990 * 109.47112 * 83.80159 * 20 11 10 22 22 C 1.53011 * 117.49932 * 243.62107 * 21 20 11 23 23 C 1.53000 * 59.99948 * 252.51158 * 22 21 20 24 24 C 1.53038 * 109.53718 * 61.24006 * 10 9 8 25 25 C 1.46923 * 120.62814 * 184.18119 * 7 5 4 26 26 C 1.39837 * 118.15448 * 359.97438 * 4 3 2 27 27 C 1.38125 * 119.00387 * 359.97438 * 26 4 3 28 28 N 1.31798 * 119.55428 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46707 * 90.00779 * 1 2 3 30 30 H 1.09004 * 109.47142 * 210.00183 * 1 2 3 31 31 H 1.08998 * 109.47130 * 330.00339 * 1 2 3 32 32 H 1.07994 * 120.49967 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.58768 * 353.41389 * 8 7 5 34 34 H 1.08994 * 109.58391 * 113.84538 * 8 7 5 35 35 H 1.09005 * 109.56642 * 185.55183 * 9 8 7 36 36 H 1.09001 * 109.36297 * 65.50273 * 9 8 7 37 37 H 1.08998 * 109.45881 * 301.22303 * 10 9 8 38 38 H 0.96996 * 120.00181 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.46794 * 203.80606 * 20 11 10 40 40 H 1.09000 * 109.46582 * 323.79917 * 20 11 10 41 41 H 1.08992 * 115.55509 * 29.33133 * 21 20 11 42 42 H 1.09002 * 117.49541 * 0.02562 * 22 21 20 43 43 H 1.09002 * 117.49940 * 145.02110 * 22 21 20 44 44 H 1.08998 * 117.49757 * 252.50621 * 23 22 21 45 45 H 1.09003 * 117.49529 * 107.48734 * 23 22 21 46 46 H 1.08997 * 109.49807 * 178.68799 * 24 10 9 47 47 H 1.09001 * 109.49901 * 58.58502 * 24 10 9 48 48 H 1.09009 * 109.58232 * 246.15409 * 25 7 5 49 49 H 1.09002 * 109.58790 * 6.43427 * 25 7 5 50 50 H 1.08001 * 120.49540 * 179.97438 * 26 4 3 51 51 H 1.07998 * 119.54958 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 0.0005 5 6 4.3599 2.4520 -0.0055 6 8 4.0452 3.3534 -0.7572 7 7 5.4126 2.6017 0.8227 8 6 5.8577 1.4914 1.6758 9 6 5.9185 1.9708 3.1249 10 6 6.7975 3.2208 3.2100 11 7 6.8815 3.6645 4.6036 12 6 5.7437 4.0148 5.2803 13 1 4.7803 3.6760 4.9287 14 6 5.8285 4.8053 6.4181 15 7 6.9018 5.5363 6.6332 16 14 4.4195 4.8318 7.6443 17 1 4.1990 3.4623 8.1745 18 1 4.7549 5.7475 8.7641 19 1 3.1847 5.3060 6.9692 20 6 8.1827 3.7336 5.2732 21 6 8.8601 5.0631 4.9353 22 6 10.1723 5.0079 4.1503 23 6 10.1838 5.3792 5.6345 24 6 6.1873 4.3346 2.3561 25 6 6.1330 3.8802 0.8941 26 6 4.2343 -0.0507 0.0016 27 6 3.4741 -1.2039 0.0026 28 7 2.1571 -1.1465 0.0005 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6494 2.1377 0.0004 33 1 5.1530 0.6637 1.5956 34 1 6.8480 1.1628 1.3607 35 1 6.3410 1.1856 3.7518 36 1 4.9122 2.2097 3.4691 37 1 7.7968 2.9876 2.8425 38 1 6.9612 6.0884 7.4285 39 1 8.0405 3.6619 6.3515 40 1 8.8101 2.9095 4.9339 41 1 8.1867 5.8958 4.7326 42 1 10.5527 4.0244 3.8743 43 1 10.3622 5.8043 3.4308 44 1 10.3814 6.4199 5.8914 45 1 10.5719 4.6400 6.3353 46 1 6.8013 5.2317 2.4356 47 1 5.1785 4.5511 2.7074 48 1 7.1464 3.7503 0.5139 49 1 5.6114 4.6275 0.2960 50 1 5.3129 -0.1052 0.0017 51 1 3.9653 -2.1657 0.0039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670989230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:53 Heat of formation + Delta-G solvation = 60.150291 kcal Electronic energy + Delta-G solvation = -30814.117974 eV Core-core repulsion = 26908.335557 eV Total energy + Delta-G solvation = -3905.782416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -40.96980 -39.47735 -37.72599 -36.47696 -34.64836 -33.54250 -32.64709 -31.98710 -30.67732 -29.85691 -27.92577 -26.26164 -25.51950 -24.20102 -23.06982 -22.68291 -21.83767 -21.50483 -20.22507 -19.42490 -19.00638 -17.57007 -16.70617 -16.44177 -16.22653 -15.82568 -15.27621 -15.06304 -14.89226 -14.50987 -14.41954 -13.90301 -13.73104 -13.68631 -13.49039 -13.40851 -13.07378 -12.99008 -12.66999 -12.49722 -12.21709 -12.01398 -11.83349 -11.60606 -11.33155 -10.92966 -10.87475 -10.79559 -10.69254 -10.65557 -10.36473 -10.29749 -10.07907 -9.98382 -9.92030 -9.71085 -9.49693 -9.19006 -9.11732 -8.77059 -8.52345 -8.39488 -6.82056 -5.76968 -3.18072 0.68009 0.85727 2.63188 2.98448 3.36631 3.43269 3.44880 3.55296 4.04519 4.22837 4.45651 4.53261 4.72240 4.81892 4.90750 5.03930 5.12061 5.17448 5.22159 5.32208 5.36424 5.39068 5.45067 5.49022 5.59472 5.67872 5.74493 5.77969 5.81414 5.85064 5.90746 5.97021 5.98893 6.06199 6.18941 6.31212 6.34111 6.37599 6.41938 6.55081 6.56338 6.66450 6.69391 6.88842 6.97911 7.04521 7.25162 7.40449 7.45984 7.71848 7.73455 7.84189 8.08350 8.35683 9.20414 9.83461 10.31194 11.26499 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.003196 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.870859 B = 8758.804307 C = 9961.528572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.127 3.873 3 C -0.123 4.123 4 C -0.069 4.069 5 C 0.557 3.443 6 O -0.537 6.537 7 N -0.592 5.592 8 C 0.093 3.907 9 C -0.143 4.143 10 C 0.181 3.819 11 N -0.587 5.587 12 C -0.253 4.253 13 H 0.067 0.933 14 C 0.006 3.994 15 N -0.891 5.891 16 Si 0.893 3.107 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.286 1.286 20 C 0.208 3.792 21 C -0.080 4.080 22 C -0.225 4.225 23 C -0.185 4.185 24 C -0.136 4.136 25 C 0.112 3.888 26 C -0.154 4.154 27 C 0.102 3.898 28 N -0.476 5.476 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.053 0.947 38 H 0.252 0.748 39 H 0.075 0.925 40 H 0.009 0.991 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.073 0.927 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.086 0.914 50 H 0.145 0.855 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 -10.626 -11.421 15.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.011 4.011 3 C -0.144 4.144 4 C -0.080 4.080 5 C 0.344 3.656 6 O -0.415 6.415 7 N -0.324 5.324 8 C -0.030 4.030 9 C -0.183 4.183 10 C 0.073 3.927 11 N -0.306 5.306 12 C -0.382 4.382 13 H 0.085 0.915 14 C -0.193 4.193 15 N -0.535 5.535 16 Si 0.724 3.276 17 H -0.213 1.213 18 H -0.218 1.218 19 H -0.212 1.212 20 C 0.082 3.918 21 C -0.101 4.101 22 C -0.262 4.262 23 C -0.223 4.223 24 C -0.176 4.176 25 C -0.010 4.010 26 C -0.175 4.175 27 C -0.055 4.055 28 N -0.186 5.186 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.160 0.840 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.093 0.907 40 H 0.027 0.973 41 H 0.132 0.868 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.104 0.896 50 H 0.163 0.837 51 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -3.093 -10.777 -11.631 16.155 hybrid contribution 0.031 1.061 0.888 1.384 sum -3.063 -9.716 -10.742 14.805 Atomic orbital electron populations 1.20737 0.88337 1.03801 1.03263 1.21272 0.97274 0.87781 0.94789 1.22025 0.93037 1.00046 0.99280 1.20353 0.94494 0.93997 0.99129 1.18231 0.80108 0.86536 0.80744 1.90774 1.68541 1.41998 1.40180 1.48072 1.30163 1.14535 1.39613 1.22214 1.00041 0.89039 0.91698 1.22332 1.02828 1.00066 0.93084 1.20195 0.95491 0.91177 0.85829 1.44103 1.03662 1.76398 1.06428 1.18997 0.86713 1.25863 1.06665 0.91495 1.24829 0.97140 0.96913 1.00412 1.70140 1.28376 1.27623 1.27352 0.86515 0.82260 0.77284 0.81575 1.21318 1.21784 1.21230 1.20182 0.83755 0.90018 0.97801 1.23081 0.87279 1.02494 0.97198 1.23106 1.08064 1.00770 0.94298 1.22605 1.05826 1.00290 0.93581 1.22372 1.03112 1.00286 0.91854 1.21815 0.95768 0.84294 0.99119 1.22409 1.01916 0.92352 1.00787 1.22709 0.89176 0.98311 0.95325 1.67386 1.10290 1.29405 1.11538 0.90223 0.90226 0.90407 0.84012 0.89431 0.91249 0.91000 0.91341 0.92884 0.93751 0.90668 0.97273 0.86767 0.90685 0.90900 0.90670 0.90601 0.90794 0.91280 0.91682 0.89595 0.83745 0.82065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 10.17 36.01 0.37 -0.48 16 2 C 0.13 1.42 6.78 -82.63 -0.56 0.86 16 3 C -0.12 -1.51 9.45 -39.02 -0.37 -1.88 16 4 C -0.07 -0.88 5.21 -104.65 -0.54 -1.43 16 5 C 0.56 8.49 7.35 -12.19 -0.09 8.40 16 6 O -0.54 -9.84 16.44 5.36 0.09 -9.76 16 7 N -0.59 -8.45 2.98 -174.03 -0.52 -8.97 16 8 C 0.09 1.15 5.23 -3.93 -0.02 1.13 16 9 C -0.14 -2.24 5.29 -26.84 -0.14 -2.38 16 10 C 0.18 3.24 2.59 -67.89 -0.18 3.07 16 11 N -0.59 -12.85 2.46 -165.63 -0.41 -13.26 16 12 C -0.25 -6.25 8.41 -15.06 -0.13 -6.38 16 13 H 0.07 1.68 6.89 -52.49 -0.36 1.32 16 14 C 0.01 0.15 4.88 -17.43 -0.09 0.06 16 15 N -0.89 -23.39 9.00 55.49 0.50 -22.89 16 16 Si 0.89 20.89 29.60 -169.99 -5.03 15.86 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 C 0.21 4.53 5.08 -4.05 -0.02 4.51 16 21 C -0.08 -1.68 4.42 -90.62 -0.40 -2.08 16 22 C -0.23 -3.98 10.18 -26.73 -0.27 -4.25 16 23 C -0.19 -3.49 10.25 -26.73 -0.27 -3.77 16 24 C -0.14 -2.40 5.30 -26.61 -0.14 -2.54 16 25 C 0.11 1.68 6.42 -3.71 -0.02 1.65 16 26 C -0.15 -1.59 7.45 -39.02 -0.29 -1.88 16 27 C 0.10 1.00 11.17 -17.60 -0.20 0.80 16 28 N -0.48 -5.52 10.25 -9.53 -0.10 -5.62 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.54 8.08 -51.93 -0.42 0.12 16 32 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.09 0.97 4.22 -51.93 -0.22 0.75 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.23 7.05 -51.93 -0.37 0.87 16 37 H 0.05 0.91 7.87 -51.93 -0.41 0.50 16 38 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 39 H 0.08 1.86 6.54 -51.93 -0.34 1.52 16 40 H 0.01 0.18 7.79 -51.93 -0.40 -0.22 16 41 H 0.11 2.81 7.28 -51.93 -0.38 2.43 16 42 H 0.07 1.24 8.03 -51.93 -0.42 0.82 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.07 1.39 7.71 -51.93 -0.40 0.99 16 48 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 49 H 0.09 1.36 7.03 -51.93 -0.36 1.00 16 50 H 0.14 1.19 6.62 -52.49 -0.35 0.84 16 51 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 400.48 15.07 6.04 6.04 Total: -1.00 -28.83 400.48 -11.01 -39.84 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.21 Total: 5.34 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -3.37 Total: -6.59 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.52 Total: -50.74 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -28.83 -11.01 -39.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670989230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.994 kcal (2) G-P(sol) polarization free energy of solvation -28.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds