Wall clock time and date at job start Wed Apr 1 2020 02:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38171 * 119.55239 * 2 1 4 4 C 1.39794 * 119.00038 * 179.97438 * 3 2 1 5 5 C 1.48154 * 120.92218 * 179.72445 * 4 3 2 6 6 O 1.21511 * 119.99714 * 314.77472 * 5 4 3 7 7 N 1.34780 * 119.99930 * 134.77212 * 5 4 3 8 8 C 1.46930 * 120.62851 * 3.90136 * 7 5 4 9 9 C 1.52756 * 109.00462 * 233.58165 * 8 7 5 10 10 C 1.53041 * 109.38749 * 305.58992 * 9 8 7 11 11 N 1.46496 * 109.46324 * 181.26225 * 10 9 8 12 12 C 1.36943 * 119.99947 * 299.93048 * 11 10 9 13 13 H 1.08002 * 119.99669 * 19.76740 * 12 11 10 14 14 C 1.38803 * 119.99938 * 199.76662 * 12 11 10 15 15 N 1.31622 * 120.00498 * 20.00940 * 14 12 11 16 16 Si 1.86800 * 120.00026 * 200.01221 * 14 12 11 17 17 H 1.48502 * 109.47043 * 60.00033 * 16 14 12 18 18 H 1.48497 * 109.47248 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47007 * 300.00056 * 16 14 12 20 20 C 1.46503 * 120.00150 * 119.93350 * 11 10 9 21 21 C 1.52990 * 109.47112 * 83.80159 * 20 11 10 22 22 C 1.53011 * 117.49932 * 243.62107 * 21 20 11 23 23 C 1.53000 * 59.99948 * 252.51158 * 22 21 20 24 24 C 1.53038 * 109.53718 * 61.24006 * 10 9 8 25 25 C 1.46923 * 120.62814 * 184.18119 * 7 5 4 26 26 C 1.39837 * 118.15448 * 359.97438 * 4 3 2 27 27 C 1.38125 * 119.00387 * 359.97438 * 26 4 3 28 28 N 1.31798 * 119.55428 * 179.97438 * 2 1 3 29 29 H 1.09007 * 109.46707 * 90.00779 * 1 2 3 30 30 H 1.09004 * 109.47142 * 210.00183 * 1 2 3 31 31 H 1.08998 * 109.47130 * 330.00339 * 1 2 3 32 32 H 1.07994 * 120.49967 * 0.02562 * 3 2 1 33 33 H 1.08995 * 109.58768 * 353.41389 * 8 7 5 34 34 H 1.08994 * 109.58391 * 113.84538 * 8 7 5 35 35 H 1.09005 * 109.56642 * 185.55183 * 9 8 7 36 36 H 1.09001 * 109.36297 * 65.50273 * 9 8 7 37 37 H 1.08998 * 109.45881 * 301.22303 * 10 9 8 38 38 H 0.96996 * 120.00181 * 180.02562 * 15 14 12 39 39 H 1.08996 * 109.46794 * 203.80606 * 20 11 10 40 40 H 1.09000 * 109.46582 * 323.79917 * 20 11 10 41 41 H 1.08992 * 115.55509 * 29.33133 * 21 20 11 42 42 H 1.09002 * 117.49541 * 0.02562 * 22 21 20 43 43 H 1.09002 * 117.49940 * 145.02110 * 22 21 20 44 44 H 1.08998 * 117.49757 * 252.50621 * 23 22 21 45 45 H 1.09003 * 117.49529 * 107.48734 * 23 22 21 46 46 H 1.08997 * 109.49807 * 178.68799 * 24 10 9 47 47 H 1.09001 * 109.49901 * 58.58502 * 24 10 9 48 48 H 1.09009 * 109.58232 * 246.15409 * 25 7 5 49 49 H 1.09002 * 109.58790 * 6.43427 * 25 7 5 50 50 H 1.08001 * 120.49540 * 179.97438 * 26 4 3 51 51 H 1.07998 * 119.54958 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1885 1.2020 0.0000 4 6 3.5864 1.1885 0.0005 5 6 4.3599 2.4520 -0.0055 6 8 4.0452 3.3534 -0.7572 7 7 5.4126 2.6017 0.8227 8 6 5.8577 1.4914 1.6758 9 6 5.9185 1.9708 3.1249 10 6 6.7975 3.2208 3.2100 11 7 6.8815 3.6645 4.6036 12 6 5.7437 4.0148 5.2803 13 1 4.7803 3.6760 4.9287 14 6 5.8285 4.8053 6.4181 15 7 6.9018 5.5363 6.6332 16 14 4.4195 4.8318 7.6443 17 1 4.1990 3.4623 8.1745 18 1 4.7549 5.7475 8.7641 19 1 3.1847 5.3060 6.9692 20 6 8.1827 3.7336 5.2732 21 6 8.8601 5.0631 4.9353 22 6 10.1723 5.0079 4.1503 23 6 10.1838 5.3792 5.6345 24 6 6.1873 4.3346 2.3561 25 6 6.1330 3.8802 0.8941 26 6 4.2343 -0.0507 0.0016 27 6 3.4741 -1.2039 0.0026 28 7 2.1571 -1.1465 0.0005 29 1 -0.3633 -0.0001 -1.0278 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6494 2.1377 0.0004 33 1 5.1530 0.6637 1.5956 34 1 6.8480 1.1628 1.3607 35 1 6.3410 1.1856 3.7518 36 1 4.9122 2.2097 3.4691 37 1 7.7968 2.9876 2.8425 38 1 6.9612 6.0884 7.4285 39 1 8.0405 3.6619 6.3515 40 1 8.8101 2.9095 4.9339 41 1 8.1867 5.8958 4.7326 42 1 10.5527 4.0244 3.8743 43 1 10.3622 5.8043 3.4308 44 1 10.3814 6.4199 5.8914 45 1 10.5719 4.6400 6.3353 46 1 6.8013 5.2317 2.4356 47 1 5.1785 4.5511 2.7074 48 1 7.1464 3.7503 0.5139 49 1 5.6114 4.6275 0.2960 50 1 5.3129 -0.1052 0.0017 51 1 3.9653 -2.1657 0.0039 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670989230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:52 Heat of formation + Delta-G solvation = 46.019071 kcal Electronic energy + Delta-G solvation = -30814.730749 eV Core-core repulsion = 26908.335557 eV Total energy + Delta-G solvation = -3906.395192 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.96330 -40.53523 -39.18524 -37.93157 -36.16652 -34.57380 -33.63450 -33.40995 -31.88952 -31.46602 -28.66588 -27.95049 -26.90798 -25.39107 -24.22238 -23.79933 -23.14125 -22.97076 -21.56497 -21.05290 -20.27617 -18.69717 -18.08427 -17.63794 -17.36683 -16.89706 -16.84009 -16.16675 -16.15179 -15.79755 -15.49723 -15.37660 -15.20708 -15.09695 -14.77304 -14.41486 -14.36360 -14.26604 -13.62645 -13.48717 -13.25283 -13.20057 -13.12688 -13.04276 -12.71621 -12.65874 -12.47222 -12.32795 -12.25713 -12.14634 -12.01336 -11.81962 -11.54168 -11.42117 -11.25518 -10.88588 -10.80502 -10.51784 -10.41777 -10.14141 -9.90876 -9.73956 -8.62552 -7.72254 -5.11999 -0.23028 0.04825 1.45241 1.48713 1.49202 1.52622 1.89262 2.55495 2.70980 3.20161 3.34345 3.35322 3.38198 3.59483 3.76768 3.87167 3.95334 4.01419 4.11178 4.19733 4.29033 4.33614 4.42199 4.45464 4.47639 4.54102 4.56592 4.66291 4.70950 4.76825 4.78453 4.80965 4.85821 4.86680 4.94869 4.95135 5.00147 5.06622 5.15249 5.16157 5.17968 5.38692 5.44743 5.49689 5.56247 5.61369 5.63386 5.73460 5.81571 6.06275 6.25746 6.44426 6.91466 6.91829 7.28934 8.02103 8.42805 9.27524 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.003196 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.870859 B = 8758.804307 C = 9961.528572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.121 3.879 3 C -0.142 4.142 4 C -0.087 4.087 5 C 0.555 3.445 6 O -0.577 6.577 7 N -0.591 5.591 8 C 0.099 3.901 9 C -0.134 4.134 10 C 0.178 3.822 11 N -0.598 5.598 12 C -0.245 4.245 13 H 0.057 0.943 14 C -0.040 4.040 15 N -0.905 5.905 16 Si 0.939 3.061 17 H -0.285 1.285 18 H -0.299 1.299 19 H -0.290 1.290 20 C 0.215 3.785 21 C -0.100 4.100 22 C -0.192 4.192 23 C -0.185 4.185 24 C -0.123 4.123 25 C 0.121 3.879 26 C -0.148 4.148 27 C 0.106 3.894 28 N -0.492 5.492 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.136 0.864 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.074 0.926 38 H 0.242 0.758 39 H 0.039 0.961 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.031 0.969 48 H 0.094 0.906 49 H 0.072 0.928 50 H 0.172 0.828 51 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.123 -13.450 -12.860 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.016 4.016 3 C -0.162 4.162 4 C -0.098 4.098 5 C 0.344 3.656 6 O -0.458 6.458 7 N -0.322 5.322 8 C -0.022 4.022 9 C -0.174 4.174 10 C 0.071 3.929 11 N -0.317 5.317 12 C -0.375 4.375 13 H 0.075 0.925 14 C -0.236 4.236 15 N -0.551 5.551 16 Si 0.770 3.230 17 H -0.212 1.212 18 H -0.225 1.225 19 H -0.217 1.217 20 C 0.089 3.911 21 C -0.121 4.121 22 C -0.229 4.229 23 C -0.223 4.223 24 C -0.164 4.164 25 C -0.001 4.001 26 C -0.168 4.168 27 C -0.051 4.051 28 N -0.202 5.202 29 H 0.110 0.890 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.154 0.846 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.102 0.898 46 H 0.076 0.924 47 H 0.050 0.950 48 H 0.112 0.888 49 H 0.091 0.909 50 H 0.189 0.811 51 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.703 -13.630 -13.076 18.965 hybrid contribution -0.413 1.915 1.306 2.354 sum -2.116 -11.715 -11.771 16.741 Atomic orbital electron populations 1.20812 0.86628 1.04402 1.04210 1.21622 0.98545 0.87295 0.94154 1.22109 0.93227 1.00460 1.00445 1.20305 0.94617 0.93895 1.01028 1.18627 0.79874 0.86976 0.80164 1.90747 1.69446 1.43637 1.41948 1.48142 1.29889 1.14660 1.39533 1.22355 1.02508 0.88517 0.88866 1.22184 1.00364 0.99087 0.95757 1.20422 0.97086 0.91758 0.83626 1.44260 1.03008 1.76327 1.08154 1.19062 0.87422 1.24496 1.06527 0.92483 1.25307 0.98740 0.97679 1.01910 1.70298 1.29356 1.28388 1.27027 0.85791 0.80402 0.76862 0.79970 1.21181 1.22516 1.21698 1.20042 0.84032 0.91200 0.95792 1.22640 0.87935 1.00764 1.00743 1.23127 1.04001 1.02221 0.93521 1.22645 1.04096 1.00544 0.95005 1.22173 1.00425 0.99869 0.93903 1.21654 0.97212 0.84636 0.96613 1.22671 1.03245 0.91181 0.99672 1.23342 0.88661 0.99652 0.93455 1.67482 1.11390 1.29386 1.11980 0.89025 0.89763 0.89646 0.84647 0.87578 0.87616 0.90144 0.94449 0.90806 0.94841 0.94302 0.94902 0.91014 0.88442 0.89760 0.90853 0.89818 0.92449 0.94961 0.88808 0.90931 0.81074 0.78466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 10.17 71.24 0.72 -0.84 16 2 C 0.12 2.57 6.78 42.55 0.29 2.85 16 3 C -0.14 -3.43 9.45 22.63 0.21 -3.22 16 4 C -0.09 -2.14 5.21 -19.88 -0.10 -2.24 16 5 C 0.55 16.55 7.35 86.88 0.64 17.19 16 6 O -0.58 -21.46 16.44 -3.75 -0.06 -21.52 16 7 N -0.59 -15.89 2.98 -822.80 -2.45 -18.34 16 8 C 0.10 2.12 5.23 86.22 0.45 2.57 16 9 C -0.13 -3.97 5.29 30.53 0.16 -3.80 16 10 C 0.18 6.15 2.59 45.02 0.12 6.27 16 11 N -0.60 -26.28 2.46 -677.92 -1.67 -27.95 16 12 C -0.24 -12.41 8.41 84.03 0.71 -11.70 16 13 H 0.06 2.97 6.89 -2.91 -0.02 2.95 16 14 C -0.04 -2.11 4.88 84.86 0.41 -1.70 16 15 N -0.90 -49.28 9.00 21.65 0.19 -49.08 16 16 Si 0.94 44.28 29.60 68.60 2.03 46.31 16 17 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 19 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 20 C 0.21 9.28 5.08 86.38 0.44 9.72 16 21 C -0.10 -4.17 4.42 -10.79 -0.05 -4.22 16 22 C -0.19 -6.26 10.18 30.60 0.31 -5.95 16 23 C -0.19 -6.77 10.25 30.60 0.31 -6.46 16 24 C -0.12 -4.39 5.30 30.67 0.16 -4.23 16 25 C 0.12 3.50 6.42 86.36 0.55 4.06 16 26 C -0.15 -2.56 7.45 22.63 0.17 -2.39 16 27 C 0.11 1.71 11.17 84.67 0.95 2.65 16 28 N -0.49 -10.28 10.25 -184.05 -1.89 -12.17 16 29 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.08 1.19 8.14 -2.38 -0.02 1.18 16 31 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 32 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.11 1.94 4.22 -2.39 -0.01 1.93 16 34 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.04 1.34 7.05 -2.39 -0.02 1.32 16 37 H 0.07 2.28 7.87 -2.39 -0.02 2.26 16 38 H 0.24 13.27 8.31 -92.71 -0.77 12.50 16 39 H 0.04 1.94 6.54 -2.39 -0.02 1.93 16 40 H 0.03 1.24 7.79 -2.39 -0.02 1.23 16 41 H 0.07 3.64 7.28 -2.39 -0.02 3.63 16 42 H 0.10 2.79 8.03 -2.39 -0.02 2.77 16 43 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 44 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.08 2.91 8.14 -2.39 -0.02 2.89 16 46 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.03 1.36 7.71 -2.39 -0.02 1.34 16 48 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 49 H 0.07 2.32 7.03 -2.39 -0.02 2.30 16 50 H 0.17 1.97 6.62 -2.91 -0.02 1.95 16 51 H 0.20 1.65 8.06 -2.91 -0.02 1.63 16 Total: -1.00 -66.14 400.48 3.54 -62.60 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.92 Total: 21.61 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 6.46 Total: -1.45 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -5.81 Total: -107.55 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.06 Total: -21.52 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -66.14 3.54 -62.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670989230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.622 kcal (2) G-P(sol) polarization free energy of solvation -66.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds