Wall clock time and date at job start Wed Apr 1 2020 02:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.52391 * 2 1 4 4 N 1.46506 * 109.46825 * 59.91972 * 3 2 1 5 5 C 1.34774 * 119.99601 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00424 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99866 * 179.97438 * 5 4 3 8 8 H 1.09005 * 110.72724 * 61.95052 * 7 5 4 9 9 C 1.54370 * 110.82571 * 185.57644 * 7 5 4 10 10 C 1.51223 * 105.11668 * 91.93203 * 9 7 5 11 11 C 1.38742 * 130.69293 * 197.14086 * 10 9 7 12 12 C 1.38576 * 118.56035 * 179.97438 * 11 10 9 13 13 C 1.38228 * 118.98892 * 0.02562 * 12 11 10 14 14 N 1.31693 * 120.80056 * 0.02562 * 13 12 11 15 15 C 1.32297 * 122.03134 * 0.02562 * 14 13 12 16 16 C 1.51470 * 130.14207 * 179.97438 * 15 14 13 17 17 C 1.53039 * 109.50087 * 239.92212 * 2 1 3 18 18 C 1.53042 * 109.52343 * 301.42048 * 17 2 1 19 19 C 1.53195 * 109.31067 * 298.60919 * 18 17 2 20 20 N 1.46924 * 108.76523 * 54.65957 * 19 18 17 21 21 C 1.36935 * 120.63069 * 126.40097 * 20 19 18 22 22 H 1.08000 * 120.00167 * 331.82490 * 21 20 19 23 23 C 1.38814 * 119.99745 * 151.82211 * 21 20 19 24 24 N 1.31613 * 120.00261 * 343.07824 * 23 21 20 25 25 Si 1.86804 * 119.99792 * 163.07557 * 23 21 20 26 26 H 1.48498 * 109.46991 * 90.00357 * 25 23 21 27 27 H 1.48500 * 109.46961 * 209.99948 * 25 23 21 28 28 H 1.48497 * 109.47219 * 329.99829 * 25 23 21 29 29 C 1.46924 * 118.73727 * 306.38099 * 20 19 18 30 30 H 1.08999 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47154 * 300.07838 * 1 2 3 32 32 H 1.08993 * 109.47370 * 60.08180 * 1 2 3 33 33 H 1.08995 * 109.47534 * 179.97438 * 3 2 1 34 34 H 1.09004 * 109.47119 * 299.92351 * 3 2 1 35 35 H 0.96996 * 119.99937 * 0.02562 * 4 3 2 36 36 H 1.08993 * 110.31577 * 210.84006 * 9 7 5 37 37 H 1.09000 * 110.31396 * 333.02575 * 9 7 5 38 38 H 1.07999 * 120.72010 * 359.96819 * 11 10 9 39 39 H 1.07996 * 120.50664 * 179.97438 * 12 11 10 40 40 H 1.08003 * 119.59749 * 180.02562 * 13 12 11 41 41 H 1.09004 * 110.30092 * 43.87886 * 16 15 14 42 42 H 1.09000 * 110.38157 * 281.79053 * 16 15 14 43 43 H 1.09000 * 109.46009 * 61.43071 * 17 2 1 44 44 H 1.08997 * 109.46357 * 181.40726 * 17 2 1 45 45 H 1.09000 * 109.50261 * 58.57804 * 18 17 2 46 46 H 1.09008 * 109.49871 * 178.67911 * 18 17 2 47 47 H 1.09001 * 109.60164 * 294.86589 * 19 18 17 48 48 H 1.09002 * 109.69997 * 174.51020 * 19 18 17 49 49 H 0.97004 * 120.00436 * 179.97438 * 24 23 21 50 50 H 1.08999 * 109.58730 * 293.82411 * 29 20 19 51 51 H 1.08995 * 109.70492 * 173.46176 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 7 1.5520 2.1336 1.1953 5 6 1.8781 3.4239 1.4081 6 8 2.5769 4.0123 0.6104 7 6 1.3743 4.1355 2.6373 8 1 1.7526 3.6585 3.5415 9 6 1.7548 5.6311 2.6003 10 6 0.5785 6.3213 1.9469 11 6 0.4736 7.5788 1.3703 12 6 -0.7459 7.9630 0.8359 13 6 -1.8107 7.0837 0.8964 14 7 -1.6750 5.8977 1.4525 15 6 -0.5282 5.4944 1.9744 16 6 -0.1691 4.1877 2.6510 17 6 2.0409 -0.7230 -1.2483 18 6 1.5028 -2.1556 -1.2659 19 6 2.0141 -2.9040 -0.0308 20 7 1.6517 -2.1382 1.1696 21 6 0.9640 -2.7315 2.1944 22 1 0.3022 -3.5606 1.9919 23 6 1.1177 -2.2673 3.4936 24 7 2.1437 -1.5029 3.8023 25 14 -0.1319 -2.7275 4.8037 26 1 0.2890 -3.9869 5.4684 27 1 -0.2157 -1.6400 5.8114 28 1 -1.4621 -2.9212 4.1727 29 6 2.0414 -0.7238 1.2496 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3634 0.5125 -0.8906 33 1 3.1313 1.4411 0.0005 34 1 1.6796 1.9558 -0.8907 35 1 0.9934 1.6629 1.8334 36 1 1.9012 6.0095 3.6119 37 1 2.6569 5.7775 2.0063 38 1 1.3240 8.2439 1.3387 39 1 -0.8628 8.9350 0.3799 40 1 -2.7654 7.3729 0.4826 41 1 -0.5785 3.3468 2.0911 42 1 -0.5413 4.1758 3.6755 43 1 1.6988 -0.1957 -2.1389 44 1 3.1305 -0.7445 -1.2352 45 1 0.4130 -2.1352 -1.2538 46 1 1.8477 -2.6628 -2.1670 47 1 3.0981 -3.0043 -0.0868 48 1 1.5577 -3.8927 0.0148 49 1 2.2509 -1.1782 4.7101 50 1 3.1276 -0.6463 1.2980 51 1 1.6028 -0.2715 2.1390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671916484.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:58 Heat of formation + Delta-G solvation = -7.797152 kcal Electronic energy + Delta-G solvation = -31076.974909 eV Core-core repulsion = 27168.246070 eV Total energy + Delta-G solvation = -3908.728838 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.02308 -40.80058 -39.77520 -36.95255 -36.27227 -34.89094 -33.60822 -32.96158 -31.63545 -30.57842 -28.80861 -27.99896 -27.38082 -26.96634 -24.90787 -23.87535 -22.93282 -22.77837 -21.97516 -20.88449 -19.54506 -18.53928 -18.37964 -17.68930 -17.09959 -17.06680 -16.72606 -16.34081 -15.94937 -15.80009 -15.51000 -15.38386 -15.10826 -14.86253 -14.64222 -14.46500 -14.23612 -13.87017 -13.84922 -13.74550 -13.67510 -13.17252 -13.09547 -13.00422 -12.80169 -12.70099 -12.56325 -12.51031 -12.32745 -12.25851 -12.12652 -11.84005 -11.72085 -11.40729 -11.23072 -10.96486 -10.82932 -10.67664 -10.48312 -10.27152 -10.03940 -9.66438 -8.58805 -7.80826 -5.25527 0.14293 0.34378 1.49150 1.52760 1.60607 1.60794 2.22850 2.55634 2.79306 2.96855 3.31806 3.42588 3.59224 3.63104 3.79522 3.92405 3.95905 4.03826 4.04489 4.06428 4.20409 4.34933 4.37733 4.43429 4.52755 4.55777 4.60205 4.67659 4.72485 4.74641 4.80681 4.81395 4.86858 4.94613 4.99789 5.01287 5.04504 5.11349 5.17632 5.21204 5.29569 5.31388 5.34240 5.40991 5.48020 5.53786 5.65325 5.74128 5.78765 5.80081 6.45398 6.53584 7.03178 7.20728 7.21847 7.91991 8.45115 9.24669 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.003243 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.729875 B = 8631.328268 C = 9664.930971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.091 4.091 3 C 0.143 3.857 4 N -0.714 5.714 5 C 0.517 3.483 6 O -0.580 6.580 7 C -0.108 4.108 8 H 0.141 0.859 9 C -0.060 4.060 10 C -0.152 4.152 11 C -0.074 4.074 12 C -0.168 4.168 13 C 0.084 3.916 14 N -0.511 5.511 15 C 0.091 3.909 16 C -0.060 4.060 17 C -0.095 4.095 18 C -0.123 4.123 19 C 0.136 3.864 20 N -0.604 5.604 21 C -0.258 4.258 22 H 0.061 0.939 23 C -0.040 4.040 24 N -0.928 5.928 25 Si 0.956 3.044 26 H -0.292 1.292 27 H -0.288 1.288 28 H -0.273 1.273 29 C 0.200 3.800 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.407 0.593 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.180 0.820 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.074 0.926 44 H 0.051 0.949 45 H 0.063 0.937 46 H 0.079 0.921 47 H 0.007 0.993 48 H 0.051 0.949 49 H 0.250 0.750 50 H -0.018 1.018 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 16.533 -5.292 17.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C 0.019 3.981 4 N -0.365 5.365 5 C 0.305 3.695 6 O -0.460 6.460 7 C -0.129 4.129 8 H 0.159 0.841 9 C -0.098 4.098 10 C -0.154 4.154 11 C -0.099 4.099 12 C -0.187 4.187 13 C -0.073 4.073 14 N -0.220 5.220 15 C -0.046 4.046 16 C -0.098 4.098 17 C -0.133 4.133 18 C -0.162 4.162 19 C 0.011 3.989 20 N -0.327 5.327 21 C -0.388 4.388 22 H 0.079 0.921 23 C -0.236 4.236 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.220 1.220 27 H -0.214 1.214 28 H -0.198 1.198 29 C 0.074 3.926 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.244 0.756 36 H 0.136 0.864 37 H 0.103 0.897 38 H 0.172 0.828 39 H 0.188 0.812 40 H 0.197 0.803 41 H 0.098 0.902 42 H 0.139 0.861 43 H 0.093 0.907 44 H 0.070 0.930 45 H 0.082 0.918 46 H 0.097 0.903 47 H 0.025 0.975 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.000 1.000 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.731 16.401 -5.689 17.993 hybrid contribution 0.238 -0.238 1.124 1.173 sum -4.493 16.162 -4.566 17.385 Atomic orbital electron populations 1.21622 0.93704 1.01800 1.00358 1.21344 0.96864 0.92747 0.98304 1.21235 0.98001 0.91583 0.87272 1.46076 1.52888 1.11748 1.25753 1.20832 0.79423 0.81670 0.87623 1.90626 1.40057 1.66988 1.48370 1.22096 0.96137 0.97265 0.97434 0.84128 1.20888 0.96045 0.90629 1.02213 1.21674 0.97628 0.95954 1.00162 1.21459 0.99108 0.94794 0.94577 1.22440 0.93035 1.02482 1.00784 1.23156 1.00513 0.88223 0.95448 1.66826 1.26593 1.18415 1.10182 1.22009 0.89279 0.97272 0.96002 1.20997 0.92908 0.93392 1.02463 1.21374 0.99741 0.95927 0.96275 1.21920 1.00911 0.95577 0.97785 1.21094 0.95951 0.94598 0.87272 1.44216 1.65312 1.06476 1.16666 1.19401 1.17548 1.15217 0.86613 0.92118 1.25611 0.98414 1.01094 0.98495 1.70171 1.28701 1.39837 1.18745 0.85470 0.79753 0.76978 0.79373 1.21976 1.21423 1.19838 1.20522 0.93805 0.83596 0.94677 0.92515 0.94032 0.92435 0.93178 0.91697 0.75579 0.86443 0.89679 0.82778 0.81226 0.80255 0.90195 0.86149 0.90692 0.92975 0.91832 0.90297 0.97488 0.93072 0.94071 1.00017 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 7.81 71.98 0.56 -3.31 16 2 C -0.09 -3.12 0.53 -52.10 -0.03 -3.15 16 3 C 0.14 4.74 4.57 86.38 0.39 5.14 16 4 N -0.71 -22.73 4.72 -463.04 -2.18 -24.91 16 5 C 0.52 16.24 7.16 87.66 0.63 16.86 16 6 O -0.58 -21.75 15.50 -3.04 -0.05 -21.80 16 7 C -0.11 -2.55 3.47 -10.59 -0.04 -2.58 16 8 H 0.14 2.75 8.14 -2.38 -0.02 2.73 16 9 C -0.06 -1.29 6.12 30.48 0.19 -1.10 16 10 C -0.15 -3.59 6.16 -19.59 -0.12 -3.71 16 11 C -0.07 -1.43 10.17 22.47 0.23 -1.20 16 12 C -0.17 -2.84 10.12 22.35 0.23 -2.61 16 13 C 0.08 1.72 11.18 84.71 0.95 2.66 16 14 N -0.51 -13.88 10.35 -182.98 -1.89 -15.78 16 15 C 0.09 2.40 7.32 42.72 0.31 2.72 16 16 C -0.06 -1.39 6.30 30.58 0.19 -1.20 16 17 C -0.10 -2.93 4.71 30.62 0.14 -2.79 16 18 C -0.12 -3.87 5.74 30.67 0.18 -3.69 16 19 C 0.14 5.46 6.52 86.36 0.56 6.03 16 20 N -0.60 -28.60 2.43 -699.09 -1.70 -30.30 16 21 C -0.26 -13.44 9.58 84.03 0.81 -12.63 16 22 H 0.06 3.14 7.89 -2.91 -0.02 3.12 16 23 C -0.04 -2.12 4.92 84.86 0.42 -1.70 16 24 N -0.93 -51.33 11.19 21.65 0.24 -51.09 16 25 Si 0.96 42.62 29.59 68.60 2.03 44.65 16 26 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 27 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 29 C 0.20 8.89 3.72 86.37 0.32 9.21 16 30 H 0.06 2.06 5.97 -2.39 -0.01 2.05 16 31 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 35 H 0.41 12.91 5.99 -92.71 -0.56 12.35 16 36 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.08 6.96 -2.39 -0.02 2.07 16 38 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.17 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.18 2.51 8.06 -2.91 -0.02 2.49 16 41 H 0.08 2.02 7.46 -2.39 -0.02 2.00 16 42 H 0.12 2.28 8.14 -2.39 -0.02 2.27 16 43 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.06 2.01 6.33 -2.39 -0.02 2.00 16 46 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 47 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 48 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 49 H 0.25 13.41 8.31 -92.71 -0.77 12.64 16 50 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 51 H 0.07 3.27 4.97 -2.39 -0.01 3.26 16 Total: -1.00 -68.43 393.59 2.75 -65.69 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: 0.38 Total: 30.61 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 5.92 Total: 2.93 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -5.53 Total: -122.09 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -68.43 2.75 -65.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671916484.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.892 kcal (2) G-P(sol) polarization free energy of solvation -68.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds