Wall clock time and date at job start Wed Apr 1 2020 02:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.49568 * 2 1 4 4 N 1.46495 * 109.47104 * 300.06328 * 3 2 1 5 5 C 1.34777 * 119.99958 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99943 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99996 * 179.97438 * 5 4 3 8 8 H 1.08991 * 110.72910 * 298.04717 * 7 5 4 9 9 C 1.54367 * 110.82065 * 174.41904 * 7 5 4 10 10 C 1.51216 * 105.11951 * 268.07249 * 9 7 5 11 11 C 1.38747 * 130.69054 * 162.85529 * 10 9 7 12 12 C 1.39172 * 118.40202 * 180.10042 * 11 10 9 13 13 C 1.38223 * 119.04692 * 359.94839 * 12 11 10 14 14 N 1.31681 * 120.80663 * 0.02562 * 13 12 11 15 15 C 1.32304 * 122.02835 * 0.02562 * 14 13 12 16 16 C 1.51480 * 130.13991 * 179.97438 * 15 14 13 17 17 C 1.53043 * 109.49747 * 120.06276 * 2 1 3 18 18 C 1.53038 * 109.53573 * 58.61842 * 17 2 1 19 19 C 1.53191 * 109.31214 * 61.36917 * 18 17 2 20 20 N 1.46925 * 108.77504 * 305.35954 * 19 18 17 21 21 C 1.36933 * 120.63459 * 233.63426 * 20 19 18 22 22 H 1.08002 * 119.99720 * 27.66896 * 21 20 19 23 23 C 1.38807 * 120.00207 * 207.67792 * 21 20 19 24 24 N 1.31620 * 120.00046 * 17.35367 * 23 21 20 25 25 Si 1.86799 * 120.00222 * 197.35803 * 23 21 20 26 26 H 1.48497 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47363 * 119.99751 * 25 23 21 28 28 H 1.48499 * 109.47088 * 239.99649 * 25 23 21 29 29 C 1.46930 * 118.73547 * 53.61005 * 20 19 18 30 30 H 1.08993 * 109.47255 * 60.00397 * 1 2 3 31 31 H 1.09006 * 109.47128 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47052 * 299.99988 * 1 2 3 33 33 H 1.09001 * 109.47024 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47361 * 60.06469 * 3 2 1 35 35 H 0.96998 * 120.00262 * 0.02562 * 4 3 2 36 36 H 1.08999 * 110.31514 * 26.98882 * 9 7 5 37 37 H 1.09004 * 110.31229 * 149.16279 * 9 7 5 38 38 H 1.08001 * 120.72843 * 0.02562 * 11 10 9 39 39 H 1.07999 * 120.44419 * 179.97438 * 12 11 10 40 40 H 1.08006 * 119.59691 * 179.97438 * 13 12 11 41 41 H 1.09005 * 110.29143 * 78.28252 * 16 15 14 42 42 H 1.08995 * 110.29432 * 316.24799 * 16 15 14 43 43 H 1.09000 * 109.46114 * 178.64312 * 17 2 1 44 44 H 1.09000 * 109.46011 * 298.60171 * 17 2 1 45 45 H 1.09005 * 109.49810 * 181.31564 * 18 17 2 46 46 H 1.08996 * 109.50084 * 301.41448 * 18 17 2 47 47 H 1.09003 * 109.58870 * 65.15250 * 19 18 17 48 48 H 1.08999 * 109.58625 * 185.42992 * 19 18 17 49 49 H 0.97003 * 120.00326 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.58586 * 186.60590 * 29 20 19 51 51 H 1.09002 * 109.58679 * 66.17792 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 7 1.5514 2.1335 -1.1954 5 6 1.8777 3.4236 -1.4088 6 8 2.5761 4.0124 -0.6109 7 6 1.3749 4.1346 -2.6388 8 1 1.7538 3.6571 -3.5423 9 6 1.7555 5.6301 -2.6022 10 6 0.5788 6.3207 -1.9501 11 6 0.4738 7.5786 -1.3741 12 6 -0.7523 7.9610 -0.8380 13 6 -1.8155 7.0798 -0.8991 14 7 -1.6775 5.8939 -1.4545 15 6 -0.5292 5.4919 -1.9744 16 6 -0.1671 4.1849 -2.6492 17 6 2.0408 -0.7227 1.2486 18 6 1.5036 -2.1556 1.2662 19 6 2.0154 -2.9038 0.0313 20 7 1.6529 -2.1383 -1.1693 21 6 0.9651 -2.7317 -2.1939 22 1 0.3094 -3.5659 -1.9922 23 6 1.1106 -2.2612 -3.4916 24 7 2.1352 -1.4960 -3.8032 25 14 -0.1476 -2.7140 -4.7959 26 1 -1.1948 -3.5783 -4.1946 27 1 -0.7727 -1.4778 -5.3310 28 1 0.5246 -3.4462 -5.8992 29 6 2.0420 -0.7237 -1.2493 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1306 1.4418 -0.0005 34 1 1.6785 1.9560 0.8906 35 1 0.9925 1.6627 -1.8333 36 1 2.6573 5.7767 -2.0079 37 1 1.9027 6.0080 -3.6140 38 1 1.3242 8.2436 -1.3420 39 1 -0.8708 8.9325 -0.3814 40 1 -2.7709 7.3673 -0.4855 41 1 -0.5374 4.1735 -3.6744 42 1 -0.5779 3.3443 -2.0901 43 1 3.1305 -0.7435 1.2359 44 1 1.6982 -0.1955 2.1390 45 1 1.8487 -2.6624 2.1675 46 1 0.4139 -2.1358 1.2540 47 1 3.0994 -3.0036 0.0876 48 1 1.5593 -3.8928 -0.0118 49 1 2.2367 -1.1669 -4.7101 50 1 1.6015 -0.2733 -2.1388 51 1 3.1282 -0.6457 -1.2974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671916485.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:04 Heat of formation + Delta-G solvation = 8.928714 kcal Electronic energy + Delta-G solvation = -31079.994081 eV Core-core repulsion = 27171.990531 eV Total energy + Delta-G solvation = -3908.003550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.05036 -39.54911 -38.36622 -35.94748 -34.76928 -33.24048 -32.71769 -31.43040 -29.96911 -29.59765 -27.92322 -26.58874 -25.82624 -25.31445 -23.85311 -22.31318 -21.98562 -21.74603 -20.50201 -19.69078 -18.03903 -17.28520 -16.79093 -16.66869 -16.25005 -15.80116 -15.15962 -15.07404 -14.94806 -14.44640 -14.01819 -13.92997 -13.72752 -13.57462 -13.36533 -13.15346 -13.00938 -12.90958 -12.73086 -12.33700 -12.24636 -12.13128 -11.94395 -11.69228 -11.55669 -11.36283 -11.31334 -10.99134 -10.87209 -10.67172 -10.40071 -10.19405 -10.10414 -9.86072 -9.82948 -9.72132 -9.51048 -9.39454 -9.37945 -8.83304 -8.68670 -8.51691 -6.69834 -5.83744 -3.25272 0.96944 1.16718 2.83397 3.31842 3.41609 3.42554 3.43374 3.63518 3.81485 4.30125 4.44875 4.51323 4.75291 4.75754 4.85759 5.02302 5.11391 5.13827 5.27530 5.34812 5.39395 5.43810 5.50430 5.52770 5.57474 5.66403 5.71062 5.77339 5.80034 5.86999 5.97216 6.00492 6.04352 6.10195 6.13763 6.16607 6.25447 6.40985 6.43129 6.53826 6.57196 6.61975 6.76017 6.82690 6.87772 6.96042 7.03494 7.27229 7.54923 7.75286 7.81106 7.88545 8.39266 8.46557 9.16580 9.79951 10.37413 11.24141 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.003248 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.794190 B = 8619.587136 C = 9652.031604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.137 3.863 4 N -0.713 5.713 5 C 0.520 3.480 6 O -0.548 6.548 7 C -0.113 4.113 8 H 0.122 0.878 9 C -0.066 4.066 10 C -0.137 4.137 11 C -0.064 4.064 12 C -0.176 4.176 13 C 0.097 3.903 14 N -0.478 5.478 15 C 0.120 3.880 16 C -0.064 4.064 17 C -0.095 4.095 18 C -0.135 4.135 19 C 0.143 3.857 20 N -0.589 5.589 21 C -0.247 4.247 22 H 0.065 0.935 23 C 0.002 3.998 24 N -0.902 5.902 25 Si 0.897 3.103 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.291 1.291 29 C 0.186 3.814 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.406 0.594 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.016 0.984 48 H 0.052 0.948 49 H 0.252 0.748 50 H 0.089 0.911 51 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.378 15.092 4.554 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.105 4.105 3 C 0.013 3.987 4 N -0.365 5.365 5 C 0.306 3.694 6 O -0.426 6.426 7 C -0.134 4.134 8 H 0.140 0.860 9 C -0.104 4.104 10 C -0.138 4.138 11 C -0.090 4.090 12 C -0.196 4.196 13 C -0.060 4.060 14 N -0.187 5.187 15 C -0.018 4.018 16 C -0.102 4.102 17 C -0.133 4.133 18 C -0.174 4.174 19 C 0.017 3.983 20 N -0.311 5.311 21 C -0.377 4.377 22 H 0.083 0.917 23 C -0.196 4.196 24 N -0.547 5.547 25 Si 0.727 3.273 26 H -0.203 1.203 27 H -0.215 1.215 28 H -0.218 1.218 29 C 0.060 3.940 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.150 0.850 39 H 0.153 0.847 40 H 0.173 0.827 41 H 0.120 0.880 42 H 0.110 0.890 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.034 0.966 48 H 0.071 0.929 49 H 0.062 0.938 50 H 0.107 0.893 51 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.573 14.966 4.941 16.160 hybrid contribution -0.150 0.226 -0.936 0.974 sum -3.723 15.192 4.006 16.146 Atomic orbital electron populations 1.21718 0.94495 1.02610 0.99455 1.21542 0.96474 0.92713 0.99760 1.21367 0.98798 0.92031 0.86528 1.46038 1.52986 1.11483 1.25967 1.20216 0.80220 0.82007 0.86999 1.90649 1.38585 1.66376 1.46992 1.22038 0.95845 0.96818 0.98719 0.85983 1.20886 0.97046 0.91437 1.01003 1.21509 0.97702 0.95123 0.99510 1.21202 0.97716 0.94973 0.95117 1.22181 0.93964 1.01429 1.02050 1.22591 0.98851 0.88696 0.95876 1.66840 1.25845 1.16912 1.09063 1.21862 0.88721 0.96443 0.94814 1.20978 0.93423 0.94126 1.01655 1.21345 0.99917 0.96011 0.96053 1.22046 1.00998 0.95703 0.98670 1.20925 0.96375 0.94240 0.86774 1.43995 1.65323 1.05602 1.16169 1.19215 1.17767 1.14883 0.85802 0.91713 1.24992 0.97045 1.00714 0.96833 1.70055 1.27352 1.38652 1.18612 0.86306 0.81296 0.77842 0.81877 1.20305 1.21513 1.21814 1.20786 0.96149 0.83732 0.93316 0.93678 0.90960 0.94581 0.91868 0.92468 0.75688 0.88269 0.89122 0.84969 0.84699 0.82710 0.87990 0.88972 0.92592 0.93453 0.93234 0.91946 0.96589 0.92949 0.93759 0.89335 0.96494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 7.81 37.16 0.29 -1.84 16 2 C -0.10 -1.79 0.53 -154.39 -0.08 -1.87 16 3 C 0.14 2.27 4.57 -4.04 -0.02 2.25 16 4 N -0.71 -11.24 4.71 -60.29 -0.28 -11.53 16 5 C 0.52 8.12 7.15 -10.98 -0.08 8.04 16 6 O -0.55 -10.18 15.50 5.56 0.09 -10.09 16 7 C -0.11 -1.36 3.47 -90.38 -0.31 -1.67 16 8 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 9 C -0.07 -0.74 6.12 -26.91 -0.16 -0.90 16 10 C -0.14 -1.68 6.16 -104.12 -0.64 -2.32 16 11 C -0.06 -0.69 10.20 -39.05 -0.40 -1.08 16 12 C -0.18 -1.71 10.14 -39.24 -0.40 -2.11 16 13 C 0.10 1.07 11.18 -17.62 -0.20 0.88 16 14 N -0.48 -6.66 10.35 -9.13 -0.09 -6.76 16 15 C 0.12 1.61 7.33 -81.95 -0.60 1.01 16 16 C -0.06 -0.76 6.26 -26.83 -0.17 -0.93 16 17 C -0.10 -1.54 4.71 -26.69 -0.13 -1.67 16 18 C -0.14 -2.24 5.74 -26.61 -0.15 -2.40 16 19 C 0.14 2.88 6.51 -3.71 -0.02 2.85 16 20 N -0.59 -13.73 2.44 -172.32 -0.42 -14.15 16 21 C -0.25 -6.36 9.59 -15.06 -0.14 -6.51 16 22 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 23 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 24 N -0.90 -24.38 11.19 55.49 0.62 -23.76 16 25 Si 0.90 20.58 29.59 -169.99 -5.03 15.55 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 29 C 0.19 4.04 3.73 -3.71 -0.01 4.03 16 30 H 0.04 0.76 6.86 -51.93 -0.36 0.40 16 31 H 0.07 1.35 5.97 -51.93 -0.31 1.04 16 32 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.41 6.33 5.98 -40.82 -0.24 6.08 16 36 H 0.10 1.23 6.96 -51.93 -0.36 0.87 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 40 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.09 1.16 7.45 -51.93 -0.39 0.77 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.06 1.05 6.33 -51.93 -0.33 0.73 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.05 1.04 7.94 -51.93 -0.41 0.62 16 49 H 0.25 6.62 8.31 -40.82 -0.34 6.28 16 50 H 0.09 2.08 4.95 -51.93 -0.26 1.82 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 393.59 15.07 5.93 5.93 Total: -1.00 -31.07 393.59 -10.63 -41.70 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -8.12 Total: 7.37 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.32 Total: -4.27 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.18 Total: -56.19 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.07 -10.63 -41.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671916485.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.633 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds