Wall clock time and date at job start Wed Apr 1 2020 02:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.49568 * 2 1 4 4 N 1.46495 * 109.47104 * 300.06328 * 3 2 1 5 5 C 1.34777 * 119.99958 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99943 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.99996 * 179.97438 * 5 4 3 8 8 H 1.08991 * 110.72910 * 298.04717 * 7 5 4 9 9 C 1.54367 * 110.82065 * 174.41904 * 7 5 4 10 10 C 1.51216 * 105.11951 * 268.07249 * 9 7 5 11 11 C 1.38747 * 130.69054 * 162.85529 * 10 9 7 12 12 C 1.39172 * 118.40202 * 180.10042 * 11 10 9 13 13 C 1.38223 * 119.04692 * 359.94839 * 12 11 10 14 14 N 1.31681 * 120.80663 * 0.02562 * 13 12 11 15 15 C 1.32304 * 122.02835 * 0.02562 * 14 13 12 16 16 C 1.51480 * 130.13991 * 179.97438 * 15 14 13 17 17 C 1.53043 * 109.49747 * 120.06276 * 2 1 3 18 18 C 1.53038 * 109.53573 * 58.61842 * 17 2 1 19 19 C 1.53191 * 109.31214 * 61.36917 * 18 17 2 20 20 N 1.46925 * 108.77504 * 305.35954 * 19 18 17 21 21 C 1.36933 * 120.63459 * 233.63426 * 20 19 18 22 22 H 1.08002 * 119.99720 * 27.66896 * 21 20 19 23 23 C 1.38807 * 120.00207 * 207.67792 * 21 20 19 24 24 N 1.31620 * 120.00046 * 17.35367 * 23 21 20 25 25 Si 1.86799 * 120.00222 * 197.35803 * 23 21 20 26 26 H 1.48497 * 109.46979 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47363 * 119.99751 * 25 23 21 28 28 H 1.48499 * 109.47088 * 239.99649 * 25 23 21 29 29 C 1.46930 * 118.73547 * 53.61005 * 20 19 18 30 30 H 1.08993 * 109.47255 * 60.00397 * 1 2 3 31 31 H 1.09006 * 109.47128 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47052 * 299.99988 * 1 2 3 33 33 H 1.09001 * 109.47024 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47361 * 60.06469 * 3 2 1 35 35 H 0.96998 * 120.00262 * 0.02562 * 4 3 2 36 36 H 1.08999 * 110.31514 * 26.98882 * 9 7 5 37 37 H 1.09004 * 110.31229 * 149.16279 * 9 7 5 38 38 H 1.08001 * 120.72843 * 0.02562 * 11 10 9 39 39 H 1.07999 * 120.44419 * 179.97438 * 12 11 10 40 40 H 1.08006 * 119.59691 * 179.97438 * 13 12 11 41 41 H 1.09005 * 110.29143 * 78.28252 * 16 15 14 42 42 H 1.08995 * 110.29432 * 316.24799 * 16 15 14 43 43 H 1.09000 * 109.46114 * 178.64312 * 17 2 1 44 44 H 1.09000 * 109.46011 * 298.60171 * 17 2 1 45 45 H 1.09005 * 109.49810 * 181.31564 * 18 17 2 46 46 H 1.08996 * 109.50084 * 301.41448 * 18 17 2 47 47 H 1.09003 * 109.58870 * 65.15250 * 19 18 17 48 48 H 1.08999 * 109.58625 * 185.42992 * 19 18 17 49 49 H 0.97003 * 120.00326 * 180.02562 * 24 23 21 50 50 H 1.09001 * 109.58586 * 186.60590 * 29 20 19 51 51 H 1.09002 * 109.58679 * 66.17792 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 7 1.5514 2.1335 -1.1954 5 6 1.8777 3.4236 -1.4088 6 8 2.5761 4.0124 -0.6109 7 6 1.3749 4.1346 -2.6388 8 1 1.7538 3.6571 -3.5423 9 6 1.7555 5.6301 -2.6022 10 6 0.5788 6.3207 -1.9501 11 6 0.4738 7.5786 -1.3741 12 6 -0.7523 7.9610 -0.8380 13 6 -1.8155 7.0798 -0.8991 14 7 -1.6775 5.8939 -1.4545 15 6 -0.5292 5.4919 -1.9744 16 6 -0.1671 4.1849 -2.6492 17 6 2.0408 -0.7227 1.2486 18 6 1.5036 -2.1556 1.2662 19 6 2.0154 -2.9038 0.0313 20 7 1.6529 -2.1383 -1.1693 21 6 0.9651 -2.7317 -2.1939 22 1 0.3094 -3.5659 -1.9922 23 6 1.1106 -2.2612 -3.4916 24 7 2.1352 -1.4960 -3.8032 25 14 -0.1476 -2.7140 -4.7959 26 1 -1.1948 -3.5783 -4.1946 27 1 -0.7727 -1.4778 -5.3310 28 1 0.5246 -3.4462 -5.8992 29 6 2.0420 -0.7237 -1.2493 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.1306 1.4418 -0.0005 34 1 1.6785 1.9560 0.8906 35 1 0.9925 1.6627 -1.8333 36 1 2.6573 5.7767 -2.0079 37 1 1.9027 6.0080 -3.6140 38 1 1.3242 8.2436 -1.3420 39 1 -0.8708 8.9325 -0.3814 40 1 -2.7709 7.3673 -0.4855 41 1 -0.5374 4.1735 -3.6744 42 1 -0.5779 3.3443 -2.0901 43 1 3.1305 -0.7435 1.2359 44 1 1.6982 -0.1955 2.1390 45 1 1.8487 -2.6624 2.1675 46 1 0.4139 -2.1358 1.2540 47 1 3.0994 -3.0036 0.0876 48 1 1.5593 -3.8928 -0.0118 49 1 2.2367 -1.1669 -4.7101 50 1 1.6015 -0.2733 -2.1388 51 1 3.1282 -0.6457 -1.2974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671916485.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:03 Heat of formation + Delta-G solvation = -8.102043 kcal Electronic energy + Delta-G solvation = -31080.732590 eV Core-core repulsion = 27171.990531 eV Total energy + Delta-G solvation = -3908.742059 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.00543 -40.78953 -39.77273 -36.94939 -36.27400 -34.89329 -33.58436 -32.95948 -31.63439 -30.57661 -28.80569 -27.99875 -27.38309 -26.96824 -24.90513 -23.87608 -22.92900 -22.77746 -21.97490 -20.88284 -19.54669 -18.53974 -18.38212 -17.68031 -17.10087 -17.06356 -16.73089 -16.33952 -15.94504 -15.80490 -15.50982 -15.38142 -15.11062 -14.86281 -14.64072 -14.46614 -14.24106 -13.86974 -13.85381 -13.74550 -13.67512 -13.17358 -13.09752 -12.99364 -12.80754 -12.71191 -12.58435 -12.51212 -12.33119 -12.24783 -12.10091 -11.83259 -11.72184 -11.40907 -11.23142 -10.96542 -10.82784 -10.66014 -10.48681 -10.27422 -10.03947 -9.66068 -8.59801 -7.80924 -5.25186 0.13817 0.33822 1.48486 1.53015 1.60711 1.61221 2.22777 2.55500 2.78662 2.96740 3.31386 3.42631 3.58979 3.62894 3.79263 3.92540 3.95810 4.03823 4.04419 4.05909 4.19871 4.34770 4.37614 4.43440 4.52645 4.55701 4.60013 4.67358 4.72436 4.74615 4.80616 4.81354 4.86679 4.94497 4.99760 5.01160 5.04504 5.11283 5.17573 5.20541 5.29309 5.31233 5.34166 5.40927 5.47973 5.53804 5.65383 5.74196 5.78558 5.80020 6.45150 6.53455 7.03178 7.20653 7.21625 7.91860 8.44720 9.24651 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012333 B = 0.003248 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.794190 B = 8619.587136 C = 9652.031604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.091 4.091 3 C 0.143 3.857 4 N -0.714 5.714 5 C 0.517 3.483 6 O -0.580 6.580 7 C -0.108 4.108 8 H 0.141 0.859 9 C -0.060 4.060 10 C -0.152 4.152 11 C -0.074 4.074 12 C -0.168 4.168 13 C 0.083 3.917 14 N -0.511 5.511 15 C 0.092 3.908 16 C -0.060 4.060 17 C -0.095 4.095 18 C -0.123 4.123 19 C 0.136 3.864 20 N -0.604 5.604 21 C -0.255 4.255 22 H 0.061 0.939 23 C -0.041 4.041 24 N -0.929 5.929 25 Si 0.955 3.045 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.298 1.298 29 C 0.199 3.801 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.407 0.593 36 H 0.085 0.915 37 H 0.118 0.882 38 H 0.155 0.845 39 H 0.170 0.830 40 H 0.180 0.820 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.051 0.949 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.007 0.993 48 H 0.051 0.949 49 H 0.250 0.750 50 H 0.068 0.932 51 H -0.018 1.018 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 16.499 5.352 17.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C 0.019 3.981 4 N -0.365 5.365 5 C 0.304 3.696 6 O -0.460 6.460 7 C -0.129 4.129 8 H 0.159 0.841 9 C -0.098 4.098 10 C -0.154 4.154 11 C -0.099 4.099 12 C -0.188 4.188 13 C -0.074 4.074 14 N -0.220 5.220 15 C -0.045 4.045 16 C -0.098 4.098 17 C -0.133 4.133 18 C -0.162 4.162 19 C 0.011 3.989 20 N -0.327 5.327 21 C -0.386 4.386 22 H 0.079 0.921 23 C -0.237 4.237 24 N -0.575 5.575 25 Si 0.784 3.216 26 H -0.197 1.197 27 H -0.210 1.210 28 H -0.226 1.226 29 C 0.073 3.927 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.244 0.756 36 H 0.103 0.897 37 H 0.136 0.864 38 H 0.173 0.827 39 H 0.188 0.812 40 H 0.197 0.803 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.025 0.975 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.086 0.914 51 H 0.000 1.000 Dipole moment (debyes) X Y Z Total from point charges -4.712 16.359 5.757 17.972 hybrid contribution 0.229 -0.218 -1.131 1.174 sum -4.483 16.141 4.626 17.379 Atomic orbital electron populations 1.21625 0.93705 1.01814 1.00352 1.21343 0.96868 0.92745 0.98302 1.21235 0.98003 0.91590 0.87265 1.46075 1.52880 1.11765 1.25753 1.20841 0.79403 0.81666 0.87654 1.90625 1.40066 1.66950 1.48397 1.22075 0.96095 0.97292 0.97433 0.84107 1.20885 0.96032 0.90604 1.02238 1.21731 0.97594 0.95935 1.00164 1.21615 0.99005 0.94788 0.94512 1.22575 0.92986 1.02445 1.00773 1.23141 1.00513 0.88226 0.95509 1.66827 1.26445 1.18502 1.10227 1.22068 0.89267 0.97239 0.95963 1.20972 0.92950 0.93423 1.02465 1.21374 0.99744 0.95932 0.96267 1.21920 1.00920 0.95573 0.97792 1.21088 0.95963 0.94610 0.87258 1.44232 1.65306 1.06495 1.16654 1.19442 1.17693 1.14757 0.86685 0.92086 1.25595 0.98473 1.01171 0.98438 1.70185 1.28738 1.39822 1.18732 0.85399 0.79317 0.77541 0.79328 1.19749 1.21036 1.22599 1.20538 0.93819 0.83578 0.94724 0.94055 0.92484 0.92426 0.93176 0.91698 0.75590 0.89651 0.86427 0.82704 0.81237 0.80263 0.86220 0.90180 0.92975 0.90698 0.90291 0.91826 0.97466 0.93063 0.94091 0.91361 0.99991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.87 7.81 71.98 0.56 -3.31 16 2 C -0.09 -3.12 0.53 -52.10 -0.03 -3.15 16 3 C 0.14 4.74 4.57 86.38 0.39 5.14 16 4 N -0.71 -22.76 4.71 -463.06 -2.18 -24.94 16 5 C 0.52 16.24 7.15 87.66 0.63 16.87 16 6 O -0.58 -21.74 15.50 -3.04 -0.05 -21.79 16 7 C -0.11 -2.54 3.47 -10.64 -0.04 -2.58 16 8 H 0.14 2.76 8.14 -2.39 -0.02 2.74 16 9 C -0.06 -1.29 6.12 30.48 0.19 -1.10 16 10 C -0.15 -3.59 6.16 -19.54 -0.12 -3.71 16 11 C -0.07 -1.43 10.20 22.62 0.23 -1.20 16 12 C -0.17 -2.85 10.14 22.49 0.23 -2.62 16 13 C 0.08 1.70 11.18 84.71 0.95 2.65 16 14 N -0.51 -13.91 10.35 -182.81 -1.89 -15.81 16 15 C 0.09 2.43 7.33 42.77 0.31 2.74 16 16 C -0.06 -1.41 6.26 30.53 0.19 -1.22 16 17 C -0.10 -2.93 4.71 30.62 0.14 -2.79 16 18 C -0.12 -3.87 5.74 30.67 0.18 -3.69 16 19 C 0.14 5.45 6.51 86.36 0.56 6.02 16 20 N -0.60 -28.58 2.44 -699.10 -1.70 -30.28 16 21 C -0.26 -13.32 9.59 84.03 0.81 -12.51 16 22 H 0.06 3.17 7.89 -2.91 -0.02 3.15 16 23 C -0.04 -2.15 4.91 84.86 0.42 -1.74 16 24 N -0.93 -51.32 11.19 21.65 0.24 -51.07 16 25 Si 0.96 42.64 29.59 68.60 2.03 44.67 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 28 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 29 C 0.20 8.86 3.73 86.36 0.32 9.18 16 30 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 31 H 0.06 2.06 5.97 -2.38 -0.01 2.05 16 32 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.05 16 35 H 0.41 12.94 5.98 -92.71 -0.55 12.39 16 36 H 0.09 2.09 6.96 -2.39 -0.02 2.07 16 37 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.18 2.53 8.06 -2.91 -0.02 2.50 16 41 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.08 2.04 7.45 -2.39 -0.02 2.02 16 43 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 46 H 0.06 2.01 6.33 -2.39 -0.02 2.00 16 47 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 48 H 0.05 2.02 7.94 -2.39 -0.02 2.00 16 49 H 0.25 13.37 8.31 -92.71 -0.77 12.60 16 50 H 0.07 3.30 4.95 -2.39 -0.01 3.29 16 51 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 Total: -1.00 -68.38 393.59 2.75 -65.63 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: 0.38 Total: 30.62 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 5.92 Total: 2.97 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -5.53 Total: -122.10 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.05 Total: -21.79 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -68.38 2.75 -65.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671916485.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.532 kcal (2) G-P(sol) polarization free energy of solvation -68.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds