Wall clock time and date at job start Wed Apr 1 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.44662 * 2 1 4 4 N 1.46497 * 109.47125 * 299.96445 * 3 2 1 5 5 C 1.34780 * 119.99892 * 179.97438 * 4 3 2 6 6 O 1.21282 * 119.99956 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99833 * 180.02562 * 5 4 3 8 8 H 1.09002 * 110.73081 * 59.30859 * 7 5 4 9 9 C 1.54370 * 110.82254 * 182.70869 * 7 5 4 10 10 C 1.51217 * 105.12306 * 144.51310 * 9 7 5 11 11 C 1.38747 * 130.69780 * 162.91804 * 10 9 7 12 12 C 1.38574 * 118.55616 * 180.02562 * 11 10 9 13 13 C 1.38227 * 118.99324 * 359.97384 * 12 11 10 14 14 N 1.31683 * 120.79860 * 359.97438 * 13 12 11 15 15 C 1.32297 * 122.03198 * 0.02562 * 14 13 12 16 16 C 1.51787 * 130.05574 * 179.85313 * 15 14 13 17 17 C 1.53035 * 109.45978 * 119.96901 * 2 1 3 18 18 C 1.53194 * 109.31618 * 58.65077 * 17 2 1 19 19 N 1.46925 * 108.77112 * 54.64135 * 18 17 2 20 20 C 1.36927 * 120.63534 * 126.41528 * 19 18 17 21 21 H 1.08001 * 120.00618 * 207.94201 * 20 19 18 22 22 C 1.38820 * 120.00081 * 27.94124 * 20 19 18 23 23 N 1.31615 * 119.99968 * 17.51930 * 22 20 19 24 24 Si 1.86799 * 119.99918 * 197.52506 * 22 20 19 25 25 H 1.48501 * 109.47488 * 94.06659 * 24 22 20 26 26 H 1.48502 * 109.46661 * 214.06718 * 24 22 20 27 27 H 1.48495 * 109.47274 * 334.06079 * 24 22 20 28 28 C 1.46931 * 118.73572 * 306.38465 * 19 18 17 29 29 C 1.53045 * 109.45717 * 240.03446 * 2 1 3 30 30 H 1.09001 * 109.47035 * 300.03056 * 1 2 3 31 31 H 1.08996 * 109.47365 * 60.03298 * 1 2 3 32 32 H 1.09001 * 109.47388 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46868 * 59.96664 * 3 2 1 34 34 H 1.08995 * 109.46747 * 179.97438 * 3 2 1 35 35 H 0.96998 * 120.00145 * 0.02562 * 4 3 2 36 36 H 1.09008 * 110.31160 * 263.42371 * 9 7 5 37 37 H 1.09002 * 110.30974 * 25.49769 * 9 7 5 38 38 H 1.08000 * 120.71879 * 359.97279 * 11 10 9 39 39 H 1.08003 * 120.50320 * 179.97438 * 12 11 10 40 40 H 1.08000 * 119.59891 * 180.02562 * 13 12 11 41 41 H 1.09010 * 110.24519 * 78.28429 * 16 15 14 42 42 H 1.08997 * 110.49274 * 316.05053 * 16 15 14 43 43 H 1.08998 * 109.49966 * 178.60852 * 17 2 1 44 44 H 1.09008 * 109.49835 * 298.70533 * 17 2 1 45 45 H 1.08999 * 109.58540 * 174.41802 * 18 17 2 46 46 H 1.08993 * 109.58690 * 294.84691 * 18 17 2 47 47 H 0.96996 * 120.00010 * 180.02562 * 23 22 20 48 48 H 1.09001 * 109.58574 * 293.82691 * 28 19 18 49 49 H 1.09003 * 109.70391 * 173.47043 * 28 19 18 50 50 H 1.09002 * 109.49409 * 61.29591 * 29 2 1 51 51 H 1.08996 * 109.49258 * 181.39514 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0394 1.4427 0.0000 4 7 1.5515 2.1328 -1.1966 5 6 1.8762 3.4234 -1.4097 6 8 2.5728 4.0133 -0.6110 7 6 1.3738 4.1335 -2.6402 8 1 0.2842 4.1341 -2.6676 9 6 1.9250 5.5740 -2.7061 10 6 2.1531 5.8423 -4.1767 11 6 2.3325 7.0356 -4.8614 12 6 2.5244 6.9898 -6.2330 13 6 2.5310 5.7621 -6.8681 14 7 2.3586 4.6491 -6.1857 15 6 2.1724 4.6508 -4.8759 16 6 1.9549 3.4930 -3.9187 17 6 2.0398 -0.7208 1.2500 18 6 1.4995 -2.1542 1.2642 19 7 1.8626 -2.8089 0.0000 20 6 2.5260 -4.0067 -0.0001 21 1 3.1713 -4.2667 -0.8262 22 6 2.3694 -4.8870 1.0618 23 7 1.3510 -4.7512 1.8844 24 14 3.6040 -6.2642 1.3232 25 1 4.6468 -5.8189 2.2822 26 1 2.9071 -7.4569 1.8683 27 1 4.2397 -6.6118 0.0270 28 6 1.4995 -2.1542 -1.2643 29 6 2.0398 -0.7208 -1.2501 30 1 -0.3633 0.5143 0.8897 31 1 -0.3634 0.5133 -0.8902 32 1 -0.3634 -1.0277 0.0005 33 1 1.6753 1.9565 0.8897 34 1 3.1293 1.4431 0.0005 35 1 0.9941 1.6612 -1.8351 36 1 1.1963 6.2768 -2.3018 37 1 2.8637 5.6454 -2.1567 38 1 2.3218 7.9796 -4.3369 39 1 2.6668 7.8997 -6.7973 40 1 2.6803 5.7150 -7.9367 41 1 2.9030 3.0022 -3.6987 42 1 1.2469 2.7786 -4.3387 43 1 3.1295 -0.7428 1.2383 44 1 1.6957 -0.1935 2.1399 45 1 1.9382 -2.7018 2.0983 46 1 0.4146 -2.1347 1.3674 47 1 1.2417 -5.3661 2.6266 48 1 0.4146 -2.1348 -1.3673 49 1 1.9362 -2.7010 -2.1000 50 1 1.6957 -0.1934 -2.1399 51 1 3.1295 -0.7428 -1.2383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699863749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:20 Heat of formation + Delta-G solvation = 9.228511 kcal Electronic energy + Delta-G solvation = -29983.926010 eV Core-core repulsion = 26075.935460 eV Total energy + Delta-G solvation = -3907.990550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.24509 -39.91133 -38.57536 -36.22510 -35.10213 -33.21337 -32.92244 -31.10007 -30.09876 -29.72912 -28.16153 -27.14079 -26.82299 -24.66860 -23.69054 -22.41527 -22.19985 -21.79733 -20.73225 -20.06894 -18.06593 -17.61597 -16.99623 -16.72874 -16.37540 -15.97490 -15.48909 -15.20459 -14.87115 -14.73414 -14.22796 -14.02370 -13.83973 -13.67922 -13.48168 -13.34047 -13.26099 -13.17574 -12.98632 -12.77596 -12.56464 -12.07293 -12.02462 -11.71418 -11.62080 -11.43684 -11.31421 -11.21168 -10.76869 -10.73833 -10.48482 -10.24246 -10.18270 -10.09817 -10.00245 -9.78866 -9.63482 -9.50385 -9.42657 -9.06224 -9.01577 -8.44968 -6.65985 -5.79294 -3.20911 0.74083 0.93581 2.49233 3.08709 3.37788 3.41594 3.45273 3.46148 3.56984 4.06911 4.28664 4.49490 4.50130 4.57280 4.57390 4.79440 4.86993 4.95144 5.07247 5.12371 5.20348 5.23203 5.33043 5.39283 5.40559 5.41930 5.51639 5.59943 5.71950 5.74588 5.81326 5.84414 5.87903 5.92478 6.05470 6.10846 6.11210 6.32131 6.34373 6.42864 6.47210 6.48220 6.62302 6.68188 6.77480 6.86474 6.98232 7.36129 7.46085 7.66002 7.66820 7.80154 8.13328 8.45116 9.21607 9.85196 10.41760 11.29100 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022336 B = 0.002072 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.285010 B =13508.102644 C =14199.554131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C 0.128 3.872 4 N -0.718 5.718 5 C 0.521 3.479 6 O -0.541 6.541 7 C -0.110 4.110 8 H 0.111 0.889 9 C -0.063 4.063 10 C -0.144 4.144 11 C -0.064 4.064 12 C -0.174 4.174 13 C 0.101 3.899 14 N -0.478 5.478 15 C 0.121 3.879 16 C -0.060 4.060 17 C -0.129 4.129 18 C 0.172 3.828 19 N -0.591 5.591 20 C -0.251 4.251 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.902 5.902 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.145 3.855 29 C -0.121 4.121 30 H 0.049 0.951 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.402 0.598 36 H 0.084 0.916 37 H 0.103 0.897 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.158 0.842 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.022 0.978 47 H 0.253 0.747 48 H 0.020 0.980 49 H 0.051 0.949 50 H 0.046 0.954 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 23.138 -12.443 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C 0.005 3.995 4 N -0.370 5.370 5 C 0.306 3.694 6 O -0.418 6.418 7 C -0.132 4.132 8 H 0.129 0.871 9 C -0.101 4.101 10 C -0.146 4.146 11 C -0.090 4.090 12 C -0.194 4.194 13 C -0.057 4.057 14 N -0.186 5.186 15 C -0.017 4.017 16 C -0.099 4.099 17 C -0.168 4.168 18 C 0.046 3.954 19 N -0.314 5.314 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.197 4.197 23 N -0.547 5.547 24 Si 0.731 3.269 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.018 3.982 29 C -0.161 4.161 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.237 0.763 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.151 0.849 39 H 0.155 0.845 40 H 0.175 0.825 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.104 0.896 46 H 0.040 0.960 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.070 0.930 50 H 0.065 0.935 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.515 22.614 -12.171 25.726 hybrid contribution 0.336 -0.031 0.229 0.408 sum -1.178 22.583 -11.942 25.573 Atomic orbital electron populations 1.21944 0.94714 1.03052 1.00218 1.20696 0.95748 0.91971 0.97940 1.21595 0.99066 0.92312 0.86538 1.46119 1.53274 1.11557 1.26026 1.20160 0.80344 0.82036 0.86869 1.90702 1.37995 1.66118 1.46971 1.22006 1.02332 0.95921 0.92969 0.87065 1.20848 1.03460 0.94580 0.91233 1.21474 1.01126 0.94509 0.97537 1.21076 0.96246 0.97704 0.94001 1.22085 1.02450 0.99792 0.95084 1.22651 0.95691 0.87253 1.00073 1.66850 1.11771 1.32030 1.07973 1.21794 0.95209 0.94949 0.89743 1.20976 1.03075 0.95165 0.90645 1.22199 1.00658 0.99540 0.94449 1.20782 0.96578 0.87690 0.90313 1.44027 1.66788 1.21107 0.99444 1.19193 1.19071 0.93423 1.06385 0.91761 1.25028 0.97075 0.97534 1.00050 1.70030 1.27576 1.38826 1.18250 0.86294 0.81012 0.81552 0.78036 1.21503 1.21834 1.20430 1.20918 0.96328 0.90741 0.90166 1.22066 1.00792 0.98201 0.95021 0.93204 0.93909 0.90705 0.91722 0.91615 0.76264 0.89795 0.87850 0.84882 0.84514 0.82518 0.88566 0.88612 0.92464 0.93092 0.89632 0.96013 0.93683 0.96236 0.93043 0.93503 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.54 37.16 0.28 -1.71 16 2 C -0.06 -0.93 0.53 -154.47 -0.08 -1.02 16 3 C 0.13 1.72 4.56 -4.05 -0.02 1.70 16 4 N -0.72 -7.94 4.93 -60.30 -0.30 -8.24 16 5 C 0.52 6.04 7.05 -10.98 -0.08 5.96 16 6 O -0.54 -8.30 15.53 5.56 0.09 -8.22 16 7 C -0.11 -0.95 3.46 -90.35 -0.31 -1.26 16 8 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 9 C -0.06 -0.56 6.09 -26.91 -0.16 -0.72 16 10 C -0.14 -1.33 6.16 -104.21 -0.64 -1.97 16 11 C -0.06 -0.49 10.17 -39.27 -0.40 -0.89 16 12 C -0.17 -1.21 10.12 -39.46 -0.40 -1.60 16 13 C 0.10 0.84 11.18 -17.62 -0.20 0.64 16 14 N -0.48 -5.26 10.35 -9.09 -0.09 -5.35 16 15 C 0.12 1.25 7.32 -81.88 -0.60 0.65 16 16 C -0.06 -0.53 6.32 -26.64 -0.17 -0.70 16 17 C -0.13 -2.31 4.90 -26.61 -0.13 -2.44 16 18 C 0.17 3.90 4.84 -3.71 -0.02 3.88 16 19 N -0.59 -14.16 2.99 -172.32 -0.52 -14.67 16 20 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 21 H 0.06 1.71 7.89 -52.49 -0.41 1.30 16 22 C 0.00 0.05 4.90 -17.43 -0.09 -0.04 16 23 N -0.90 -25.75 11.22 55.49 0.62 -25.12 16 24 Si 0.90 21.55 29.59 -169.99 -5.03 16.52 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 C 0.14 2.84 6.04 -3.71 -0.02 2.82 16 29 C -0.12 -1.90 4.75 -26.61 -0.13 -2.03 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.49 6.86 -51.93 -0.36 0.13 16 32 H 0.07 1.25 4.98 -51.93 -0.26 0.99 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.40 3.71 6.16 -40.82 -0.25 3.46 16 36 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.10 1.08 7.02 -51.93 -0.36 0.71 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 40 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.10 0.92 7.89 -51.92 -0.41 0.51 16 42 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 45 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 46 H 0.02 0.51 6.69 -51.93 -0.35 0.17 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.02 0.38 6.69 -51.93 -0.35 0.04 16 49 H 0.05 1.01 7.94 -51.93 -0.41 0.60 16 50 H 0.05 0.60 6.82 -51.93 -0.35 0.24 16 51 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 392.22 15.07 5.91 5.91 Total: -1.00 -32.11 392.22 -10.66 -42.77 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.04 Total: 2.02 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -3.31 Total: -5.62 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.28 Total: -53.39 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.09 Total: -8.22 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.11 -10.66 -42.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699863749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.002 kcal (2) G-P(sol) polarization free energy of solvation -32.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds