Wall clock time and date at job start Wed Apr 1 2020 02:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.46369 * 2 1 4 4 N 1.46497 * 109.47347 * 60.02936 * 3 2 1 5 5 C 1.34771 * 120.00338 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99818 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00081 * 180.02562 * 5 4 3 8 8 H 1.09002 * 110.72448 * 300.69706 * 7 5 4 9 9 C 1.54369 * 110.82201 * 177.29456 * 7 5 4 10 10 C 1.51230 * 105.11659 * 268.05531 * 9 7 5 11 11 C 1.38742 * 130.69295 * 162.91502 * 10 9 7 12 12 C 1.38581 * 118.55600 * 180.02562 * 11 10 9 13 13 C 1.38236 * 118.98924 * 359.97438 * 12 11 10 14 14 N 1.31687 * 120.80162 * 359.97438 * 13 12 11 15 15 C 1.32299 * 122.02931 * 0.02562 * 14 13 12 16 16 C 1.52002 * 130.08727 * 180.02562 * 15 14 13 17 17 C 1.53040 * 109.45213 * 119.97014 * 2 1 3 18 18 C 1.53190 * 109.31488 * 58.64393 * 17 2 1 19 19 N 1.46931 * 108.77554 * 54.63668 * 18 17 2 20 20 C 1.36939 * 120.62901 * 126.36820 * 19 18 17 21 21 H 1.07997 * 120.00077 * 207.69639 * 20 19 18 22 22 C 1.38813 * 119.99774 * 27.70260 * 20 19 18 23 23 N 1.31622 * 120.00317 * 17.35090 * 22 20 19 24 24 Si 1.86801 * 119.99729 * 197.35041 * 22 20 19 25 25 H 1.48496 * 109.47565 * 89.99841 * 24 22 20 26 26 H 1.48500 * 109.47037 * 209.99913 * 24 22 20 27 27 H 1.48503 * 109.46782 * 329.99479 * 24 22 20 28 28 C 1.46924 * 118.73695 * 306.39223 * 19 18 17 29 29 C 1.53047 * 109.45755 * 240.02835 * 2 1 3 30 30 H 1.08997 * 109.47573 * 59.99744 * 1 2 3 31 31 H 1.09000 * 109.47397 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46877 * 299.99675 * 1 2 3 33 33 H 1.09001 * 109.47241 * 300.03077 * 3 2 1 34 34 H 1.08998 * 109.47236 * 180.02562 * 3 2 1 35 35 H 0.97006 * 119.99566 * 359.97438 * 4 3 2 36 36 H 1.08995 * 110.31452 * 26.96605 * 9 7 5 37 37 H 1.09001 * 110.31425 * 149.04768 * 9 7 5 38 38 H 1.07996 * 120.72371 * 359.97438 * 11 10 9 39 39 H 1.07995 * 120.50552 * 179.97438 * 12 11 10 40 40 H 1.07996 * 119.59504 * 179.97438 * 13 12 11 41 41 H 1.09000 * 110.35979 * 78.37431 * 16 15 14 42 42 H 1.09001 * 110.47880 * 316.06939 * 16 15 14 43 43 H 1.09005 * 109.49978 * 178.60013 * 17 2 1 44 44 H 1.08998 * 109.49448 * 298.69227 * 17 2 1 45 45 H 1.09004 * 109.58829 * 294.85171 * 18 17 2 46 46 H 1.09000 * 109.58633 * 174.42506 * 18 17 2 47 47 H 0.96992 * 119.99755 * 180.02562 * 23 22 20 48 48 H 1.08999 * 109.58624 * 293.82087 * 28 19 18 49 49 H 1.09001 * 109.58565 * 173.39477 * 28 19 18 50 50 H 1.09001 * 109.49860 * 61.30988 * 29 2 1 51 51 H 1.09003 * 109.49712 * 181.40431 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4425 0.0000 4 7 1.5519 2.1329 1.1965 5 6 1.8770 3.4234 1.4096 6 8 2.5738 4.0130 0.6110 7 6 1.3757 4.1333 2.6407 8 1 0.2860 4.1339 2.6688 9 6 1.9270 5.5737 2.7063 10 6 3.2022 5.4715 3.5129 11 6 4.2682 6.3511 3.6351 12 6 5.3269 5.9987 4.4570 13 6 5.2835 4.7886 5.1238 14 7 4.2545 3.9786 4.9847 15 6 3.2250 4.2787 4.2099 16 6 1.9574 3.4922 3.9183 17 6 2.0396 -0.7209 1.2501 18 6 1.4990 -2.1541 1.2643 19 7 1.8619 -2.8090 0.0000 20 6 2.5261 -4.0066 0.0001 21 1 3.1680 -4.2681 -0.8280 22 6 2.3740 -4.8844 1.0647 23 7 1.3607 -4.7451 1.8930 24 14 3.6077 -6.2633 1.3216 25 1 4.7092 -5.7857 2.1954 26 1 2.9317 -7.4189 1.9642 27 1 4.1628 -6.6817 0.0093 28 6 1.4991 -2.1542 -1.2642 29 6 2.0398 -0.7209 -1.2501 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.6759 1.9565 -0.8897 34 1 3.1297 1.4427 -0.0005 35 1 0.9943 1.6614 1.8350 36 1 2.1421 5.9426 1.7035 37 1 1.2136 6.2296 3.2052 38 1 4.2732 7.2896 3.1007 39 1 6.1729 6.6595 4.5748 40 1 6.1034 4.5040 5.7664 41 1 1.2526 3.5890 4.7441 42 1 2.1920 2.4426 3.7413 43 1 3.1294 -0.7431 1.2384 44 1 1.6956 -0.1935 2.1398 45 1 0.4140 -2.1345 1.3673 46 1 1.9375 -2.7018 2.0985 47 1 1.2547 -5.3583 2.6370 48 1 0.4142 -2.1345 -1.3673 49 1 1.9377 -2.7019 -2.0984 50 1 1.6959 -0.1936 -2.1399 51 1 3.1295 -0.7432 -1.2382 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699863750.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:24 Heat of formation + Delta-G solvation = 10.811939 kcal Electronic energy + Delta-G solvation = -30499.954343 eV Core-core repulsion = 26592.032456 eV Total energy + Delta-G solvation = -3907.921888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.20409 -39.77321 -38.52845 -36.10076 -35.05881 -33.21296 -32.78737 -30.97238 -29.95297 -29.80662 -28.07564 -27.12010 -26.79366 -24.57612 -23.62226 -22.43947 -22.08934 -21.88436 -20.70792 -19.91594 -18.05955 -17.60360 -16.92426 -16.41910 -16.35968 -15.97198 -15.42412 -15.09582 -14.87693 -14.72644 -14.19171 -14.00445 -13.76831 -13.62339 -13.46043 -13.38284 -13.13339 -13.06025 -12.75713 -12.62245 -12.37447 -12.14213 -11.98405 -11.76489 -11.57138 -11.47642 -11.29928 -11.18215 -10.76416 -10.71630 -10.53611 -10.20500 -10.17625 -9.94827 -9.87536 -9.80116 -9.51101 -9.47428 -9.41362 -8.99356 -8.89687 -8.43989 -6.65307 -5.78530 -3.19926 0.88857 1.09140 2.58055 3.16351 3.38717 3.45948 3.46571 3.54675 3.69635 4.13942 4.35359 4.50500 4.58777 4.62255 4.71354 4.91482 5.00929 5.04334 5.11450 5.17182 5.22924 5.25467 5.37886 5.41079 5.51948 5.52219 5.54113 5.62198 5.71969 5.77149 5.84456 5.92457 5.95520 6.01909 6.08091 6.10633 6.14220 6.31072 6.43654 6.47938 6.48848 6.56422 6.60788 6.70006 6.78290 6.87378 6.99651 7.36932 7.52628 7.67012 7.80716 7.81007 8.21000 8.45877 9.22501 9.86074 10.42414 11.29845 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.002636 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.161457 B =10619.363382 C =11826.776803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C 0.130 3.870 4 N -0.719 5.719 5 C 0.518 3.482 6 O -0.541 6.541 7 C -0.113 4.113 8 H 0.118 0.882 9 C -0.065 4.065 10 C -0.138 4.138 11 C -0.064 4.064 12 C -0.175 4.175 13 C 0.100 3.900 14 N -0.477 5.477 15 C 0.117 3.883 16 C -0.062 4.062 17 C -0.129 4.129 18 C 0.171 3.829 19 N -0.591 5.591 20 C -0.251 4.251 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.903 5.903 24 Si 0.901 3.099 25 H -0.288 1.288 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.146 3.854 29 C -0.120 4.120 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.402 0.598 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.157 0.843 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.021 0.979 46 H 0.085 0.915 47 H 0.253 0.747 48 H 0.021 0.979 49 H 0.052 0.948 50 H 0.052 0.948 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.682 22.662 4.084 23.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C 0.007 3.993 4 N -0.370 5.370 5 C 0.303 3.697 6 O -0.418 6.418 7 C -0.135 4.135 8 H 0.136 0.864 9 C -0.103 4.103 10 C -0.140 4.140 11 C -0.090 4.090 12 C -0.194 4.194 13 C -0.057 4.057 14 N -0.185 5.185 15 C -0.021 4.021 16 C -0.100 4.100 17 C -0.169 4.169 18 C 0.046 3.954 19 N -0.314 5.314 20 C -0.381 4.381 21 H 0.082 0.918 22 C -0.196 4.196 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.020 3.980 29 C -0.160 4.160 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.238 0.762 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.174 0.826 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.039 0.961 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.219 22.141 4.079 22.515 hybrid contribution 0.549 -0.121 0.119 0.574 sum 0.330 22.021 4.197 22.419 Atomic orbital electron populations 1.21935 0.94689 1.03028 1.00202 1.20695 0.95754 0.92027 0.97951 1.21540 0.98963 0.92294 0.86535 1.46072 1.53324 1.11623 1.26022 1.20281 0.80324 0.82088 0.87003 1.90680 1.37801 1.66200 1.47159 1.22046 1.02312 0.95983 0.93111 0.86379 1.20869 0.92973 0.95217 1.01232 1.21387 0.97168 0.96209 0.99251 1.21047 0.92111 0.99127 0.96675 1.22073 0.99614 0.98841 0.98905 1.22637 0.95509 0.90220 0.97382 1.66840 1.00558 1.33814 1.17291 1.21875 0.94070 0.93540 0.92601 1.21067 0.92463 0.99941 0.96555 1.22248 1.00661 0.99565 0.94386 1.20793 0.96468 0.87796 0.90375 1.44031 1.66781 1.21116 0.99472 1.19199 1.19211 0.93492 1.06158 0.91751 1.25009 0.97119 0.97539 0.99975 1.70026 1.27871 1.38909 1.17946 0.86310 0.81045 0.81561 0.77987 1.21477 1.21802 1.20480 1.20911 0.96383 0.90603 0.90135 1.22001 1.00752 0.98198 0.95031 0.93431 0.90710 0.93692 0.91935 0.91848 0.76205 0.88403 0.89145 0.85009 0.84592 0.82580 0.87978 0.88857 0.92604 0.93696 0.96098 0.89636 0.93694 0.96144 0.92936 0.92974 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 7.54 37.16 0.28 -1.72 16 2 C -0.06 -0.97 0.53 -154.47 -0.08 -1.06 16 3 C 0.13 1.84 4.56 -4.04 -0.02 1.82 16 4 N -0.72 -8.77 4.72 -60.30 -0.28 -9.06 16 5 C 0.52 6.57 7.12 -10.99 -0.08 6.50 16 6 O -0.54 -8.90 15.51 5.56 0.09 -8.81 16 7 C -0.11 -1.01 3.45 -90.36 -0.31 -1.32 16 8 H 0.12 0.70 8.14 -51.93 -0.42 0.27 16 9 C -0.07 -0.59 6.10 -26.91 -0.16 -0.75 16 10 C -0.14 -1.51 6.16 -104.20 -0.64 -2.15 16 11 C -0.06 -0.62 10.17 -39.27 -0.40 -1.02 16 12 C -0.17 -1.57 10.12 -39.46 -0.40 -1.97 16 13 C 0.10 1.06 11.18 -17.61 -0.20 0.86 16 14 N -0.48 -6.30 10.35 -9.02 -0.09 -6.40 16 15 C 0.12 1.42 7.33 -81.77 -0.60 0.82 16 16 C -0.06 -0.59 6.33 -26.55 -0.17 -0.76 16 17 C -0.13 -2.30 4.75 -26.61 -0.13 -2.43 16 18 C 0.17 3.87 4.84 -3.71 -0.02 3.86 16 19 N -0.59 -14.33 2.99 -172.32 -0.52 -14.84 16 20 C -0.25 -6.81 9.59 -15.06 -0.14 -6.95 16 21 H 0.06 1.73 7.89 -52.49 -0.41 1.32 16 22 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 23 N -0.90 -25.78 11.19 55.49 0.62 -25.16 16 24 Si 0.90 21.69 29.59 -169.99 -5.03 16.66 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 28 C 0.15 2.94 6.05 -3.71 -0.02 2.92 16 29 C -0.12 -2.00 4.91 -26.61 -0.13 -2.13 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.25 4.98 -51.93 -0.26 1.00 16 32 H 0.04 0.55 6.86 -51.93 -0.36 0.19 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 4.25 6.10 -40.82 -0.25 4.00 16 36 H 0.10 1.01 6.99 -51.93 -0.36 0.65 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.16 1.22 8.06 -52.49 -0.42 0.79 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.97 7.67 -51.93 -0.40 0.58 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.04 0.70 6.82 -51.93 -0.35 0.34 16 45 H 0.02 0.49 6.69 -51.93 -0.35 0.14 16 46 H 0.09 2.23 6.04 -51.93 -0.31 1.92 16 47 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.02 0.41 6.69 -51.93 -0.35 0.07 16 49 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 50 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 51 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -33.18 391.73 -10.64 -43.82 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -8.02 Total: 3.41 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -3.31 Total: -5.52 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.27 Total: -55.46 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.81 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.18 -10.64 -43.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699863750.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.630 kcal (2) G-P(sol) polarization free energy of solvation -33.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds