Wall clock time and date at job start Wed Apr 1 2020 02:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.49618 * 2 1 4 4 N 1.46497 * 109.47512 * 299.99944 * 3 2 1 5 5 C 1.34774 * 120.00437 * 180.02562 * 4 3 2 6 6 O 1.21514 * 119.99487 * 359.97438 * 5 4 3 7 7 C 1.48161 * 120.00229 * 179.97438 * 5 4 3 8 8 C 1.39314 * 119.72231 * 180.02562 * 7 5 4 9 9 C 1.38589 * 119.05737 * 179.76862 * 8 7 5 10 10 C 1.38627 * 118.48856 * 0.47100 * 9 8 7 11 11 C 1.50707 * 120.32347 * 179.75865 * 10 9 8 12 12 C 1.53000 * 117.49821 * 119.72485 * 11 10 9 13 13 C 1.52997 * 59.99999 * 107.48734 * 12 11 10 14 14 C 1.38561 * 119.35067 * 359.48324 * 10 9 8 15 15 N 1.31519 * 120.90537 * 0.29854 * 14 10 9 16 16 C 1.53045 * 109.49380 * 120.06725 * 2 1 3 17 17 C 1.53037 * 109.54234 * 58.65084 * 16 2 1 18 18 C 1.53196 * 109.33863 * 61.31530 * 17 16 2 19 19 N 1.46929 * 108.77464 * 305.38108 * 18 17 16 20 20 C 1.36940 * 120.62982 * 233.63166 * 19 18 17 21 21 H 1.07996 * 120.00238 * 27.66723 * 20 19 18 22 22 C 1.38810 * 119.99993 * 207.67212 * 20 19 18 23 23 N 1.31626 * 119.99981 * 17.35745 * 22 20 19 24 24 Si 1.86795 * 120.00302 * 197.36026 * 22 20 19 25 25 H 1.48502 * 109.47238 * 59.99626 * 24 22 20 26 26 H 1.48501 * 109.47671 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47046 * 299.99771 * 24 22 20 28 28 C 1.46920 * 118.73998 * 53.61129 * 19 18 17 29 29 H 1.09003 * 109.46970 * 60.00405 * 1 2 3 30 30 H 1.09000 * 109.47313 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47248 * 299.99886 * 1 2 3 32 32 H 1.09001 * 109.46634 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46980 * 60.00172 * 3 2 1 34 34 H 0.97003 * 119.99929 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.46858 * 359.97438 * 8 7 5 36 36 H 1.08000 * 120.75492 * 180.25185 * 9 8 7 37 37 H 1.08995 * 115.55762 * 334.03061 * 11 10 9 38 38 H 1.08999 * 117.49827 * 359.97438 * 12 11 10 39 39 H 1.08997 * 117.49786 * 214.97618 * 12 11 10 40 40 H 1.08996 * 117.50055 * 107.48881 * 13 12 11 41 41 H 1.09001 * 117.49806 * 252.48341 * 13 12 11 42 42 H 1.07997 * 119.54304 * 180.27455 * 14 10 9 43 43 H 1.08998 * 109.45648 * 178.63992 * 16 2 1 44 44 H 1.08993 * 109.45655 * 298.59646 * 16 2 1 45 45 H 1.09004 * 109.46845 * 301.36649 * 17 16 2 46 46 H 1.08992 * 109.50093 * 181.28568 * 17 16 2 47 47 H 1.08996 * 109.58690 * 185.59774 * 18 17 16 48 48 H 1.08992 * 109.70409 * 65.23751 * 18 17 16 49 49 H 0.96994 * 119.99949 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.58767 * 186.60417 * 28 19 18 51 51 H 1.08996 * 109.70691 * 66.24233 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 7 1.5527 2.1331 -1.1961 5 6 1.8793 3.4231 -1.4097 6 8 2.5781 4.0133 -0.6098 7 6 1.3862 4.1217 -2.6197 8 6 1.7278 5.4550 -2.8349 9 6 1.2630 6.0935 -3.9737 10 6 0.4643 5.3790 -4.8531 11 6 -0.0682 6.0343 -6.1014 12 6 0.3316 5.4229 -7.4457 13 6 -1.0969 5.2559 -6.9240 14 6 0.1650 4.0548 -4.5759 15 7 0.6232 3.4718 -3.4897 16 6 2.0408 -0.7228 1.2486 17 6 1.5043 -2.1560 1.2658 18 6 2.0153 -2.9039 0.0304 19 7 1.6522 -2.1380 -1.1698 20 6 0.9638 -2.7312 -2.1942 21 1 0.3083 -3.5655 -1.9925 22 6 1.1086 -2.2604 -3.4920 23 7 2.1330 -1.4951 -3.8040 24 14 -0.1504 -2.7128 -4.7957 25 1 -1.4893 -2.2207 -4.3828 26 1 0.2290 -2.0881 -6.0883 27 1 -0.1922 -4.1890 -4.9522 28 6 2.0413 -0.7235 -1.2498 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1307 1.4417 0.0005 33 1 1.6776 1.9562 0.8900 34 1 0.9945 1.6621 -1.8345 35 1 2.3487 5.9825 -2.1260 36 1 1.5144 7.1254 -4.1699 37 1 -0.1775 7.1177 -6.0538 38 1 0.9801 4.5469 -7.4273 39 1 0.4854 6.1041 -8.2826 40 1 -1.8830 5.8272 -7.4176 41 1 -1.3887 4.2697 -6.5627 42 1 -0.4532 3.4939 -5.2611 43 1 3.1305 -0.7436 1.2358 44 1 1.6982 -0.1956 2.1389 45 1 0.4145 -2.1361 1.2541 46 1 1.8497 -2.6630 2.1667 47 1 1.5571 -3.8918 -0.0142 48 1 3.0991 -3.0058 0.0847 49 1 2.2339 -1.1658 -4.7107 50 1 1.6003 -0.2729 -2.1389 51 1 3.1272 -0.6433 -1.2998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699876821.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:34 Heat of formation + Delta-G solvation = 39.118527 kcal Electronic energy + Delta-G solvation = -30667.038081 eV Core-core repulsion = 26760.343659 eV Total energy + Delta-G solvation = -3906.694422 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.75591 -39.35301 -38.22425 -37.18047 -34.76392 -33.23465 -32.59356 -31.47283 -30.85782 -29.82327 -26.66242 -26.04251 -25.28389 -24.45339 -24.01651 -22.58829 -22.19889 -21.27861 -20.56660 -20.19064 -18.37858 -17.54772 -17.17084 -16.61152 -15.99468 -15.37431 -15.28383 -15.08031 -14.87872 -14.70755 -14.15098 -14.02767 -13.87329 -13.68029 -13.29466 -13.23765 -13.08409 -12.85454 -12.67308 -12.24687 -12.15176 -12.01816 -11.77765 -11.58134 -11.28241 -11.26224 -10.92296 -10.80840 -10.73671 -10.60739 -10.38729 -10.13981 -10.12900 -10.04467 -9.88674 -9.78359 -9.58809 -9.39032 -9.33168 -8.99146 -8.60900 -8.43408 -6.63156 -5.76091 -3.17988 0.57506 1.14232 2.81779 3.38843 3.40174 3.44725 3.46012 3.53210 3.94841 4.08268 4.33248 4.50732 4.51122 4.61804 4.71668 4.74304 4.87968 5.10767 5.17849 5.25096 5.33420 5.34110 5.49308 5.54272 5.56260 5.62899 5.64818 5.70945 5.81034 5.81407 5.88908 6.01321 6.03600 6.09202 6.13995 6.21677 6.29572 6.45642 6.47165 6.48101 6.58478 6.67966 6.79405 6.87533 6.92685 7.01604 7.09071 7.34498 7.63062 7.65796 7.81347 7.96615 8.46142 8.47530 9.23584 9.87327 10.44611 11.31725 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009860 B = 0.003712 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.085451 B = 7540.461776 C = 9856.283416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.103 4.103 3 C 0.134 3.866 4 N -0.693 5.693 5 C 0.567 3.433 6 O -0.547 6.547 7 C 0.079 3.921 8 C -0.110 4.110 9 C -0.080 4.080 10 C -0.087 4.087 11 C -0.119 4.119 12 C -0.166 4.166 13 C -0.175 4.175 14 C 0.099 3.901 15 N -0.444 5.444 16 C -0.095 4.095 17 C -0.135 4.135 18 C 0.143 3.857 19 N -0.588 5.588 20 C -0.252 4.252 21 H 0.064 0.936 22 C 0.006 3.994 23 N -0.899 5.899 24 Si 0.897 3.103 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.284 1.284 28 C 0.185 3.815 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.417 0.583 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.160 0.840 43 H 0.056 0.944 44 H 0.047 0.953 45 H 0.062 0.938 46 H 0.049 0.951 47 H 0.051 0.949 48 H 0.016 0.984 49 H 0.254 0.746 50 H 0.090 0.910 51 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 14.817 -0.963 15.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.105 4.105 3 C 0.010 3.990 4 N -0.344 5.344 5 C 0.351 3.649 6 O -0.426 6.426 7 C -0.060 4.060 8 C -0.131 4.131 9 C -0.106 4.106 10 C -0.089 4.089 11 C -0.138 4.138 12 C -0.203 4.203 13 C -0.211 4.211 14 C -0.061 4.061 15 N -0.154 5.154 16 C -0.133 4.133 17 C -0.174 4.174 18 C 0.017 3.983 19 N -0.310 5.310 20 C -0.382 4.382 21 H 0.082 0.918 22 C -0.193 4.193 23 N -0.543 5.543 24 Si 0.727 3.273 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.210 1.210 28 C 0.059 3.941 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.256 0.744 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.177 0.823 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.034 0.966 49 H 0.064 0.936 50 H 0.108 0.892 51 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -3.967 14.343 -0.353 14.886 hybrid contribution -0.597 0.491 -1.300 1.512 sum -4.565 14.834 -1.653 15.608 Atomic orbital electron populations 1.21727 0.94471 1.02633 0.99537 1.21540 0.96549 0.92582 0.99807 1.21457 0.98985 0.92215 0.86380 1.45964 1.51784 1.11028 1.25652 1.17841 0.80430 0.82260 0.84374 1.90740 1.38766 1.66837 1.46226 1.21264 0.97184 0.92278 0.95238 1.22094 0.98819 0.94502 0.97638 1.21365 0.95662 1.00485 0.93055 1.20351 0.97532 0.95206 0.95815 1.20958 1.04639 0.98812 0.89381 1.23076 0.98349 1.03339 0.95573 1.23102 0.92751 1.02176 1.03098 1.22712 0.97496 0.91807 0.94042 1.67654 1.07651 1.37787 1.02340 1.21345 0.99938 0.96015 0.96008 1.22043 1.00996 0.95696 0.98657 1.20922 0.96346 0.94219 0.86818 1.43963 1.65273 1.05541 1.16219 1.19105 1.18124 1.15147 0.85823 0.91832 1.24986 0.96931 1.00559 0.96835 1.70018 1.27258 1.38211 1.18822 0.86448 0.81627 0.78030 0.81154 1.21012 1.21704 1.21023 1.20796 0.96134 0.83752 0.93444 0.93505 0.90959 0.94587 0.91639 0.92081 0.74434 0.83402 0.84229 0.86548 0.88207 0.88167 0.88095 0.87979 0.82260 0.92571 0.93389 0.91954 0.93245 0.92995 0.96616 0.93628 0.89161 0.96557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 7.81 37.16 0.29 -1.97 16 2 C -0.10 -1.88 0.53 -154.38 -0.08 -1.96 16 3 C 0.13 2.34 4.57 -4.05 -0.02 2.32 16 4 N -0.69 -12.52 4.98 -61.15 -0.30 -12.83 16 5 C 0.57 10.20 7.81 -12.19 -0.10 10.10 16 6 O -0.55 -10.72 16.32 5.35 0.09 -10.64 16 7 C 0.08 1.25 6.75 -83.01 -0.56 0.69 16 8 C -0.11 -1.43 9.63 -39.05 -0.38 -1.80 16 9 C -0.08 -0.84 9.88 -39.31 -0.39 -1.22 16 10 C -0.09 -0.93 5.63 -104.36 -0.59 -1.52 16 11 C -0.12 -0.96 6.06 -91.77 -0.56 -1.51 16 12 C -0.17 -1.27 10.17 -26.73 -0.27 -1.54 16 13 C -0.17 -1.29 9.87 -26.73 -0.26 -1.55 16 14 C 0.10 1.29 10.47 -17.57 -0.18 1.10 16 15 N -0.44 -7.08 9.54 -9.80 -0.09 -7.18 16 16 C -0.09 -1.58 4.71 -26.69 -0.13 -1.71 16 17 C -0.13 -2.30 5.74 -26.61 -0.15 -2.45 16 18 C 0.14 2.96 6.52 -3.71 -0.02 2.94 16 19 N -0.59 -14.23 2.43 -172.32 -0.42 -14.65 16 20 C -0.25 -6.73 9.59 -15.06 -0.14 -6.88 16 21 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 22 C 0.01 0.15 4.91 -17.43 -0.09 0.07 16 23 N -0.90 -25.51 11.19 55.49 0.62 -24.89 16 24 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 28 C 0.19 4.24 3.73 -3.71 -0.01 4.23 16 29 H 0.05 0.86 6.86 -51.93 -0.36 0.51 16 30 H 0.07 1.40 5.97 -51.93 -0.31 1.09 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.42 7.91 5.55 -40.82 -0.23 7.68 16 35 H 0.15 1.78 7.64 -52.49 -0.40 1.38 16 36 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.79 6.20 -51.93 -0.32 0.47 16 42 H 0.16 1.80 6.03 -52.49 -0.32 1.48 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.08 6.34 -51.93 -0.33 0.75 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 50 H 0.09 2.29 4.94 -51.93 -0.26 2.04 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -30.67 399.17 -10.74 -41.40 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -7.98 Total: 9.10 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -3.64 Total: -2.66 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.20 Total: -59.55 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.67 -10.74 -41.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699876821.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.523 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds