Wall clock time and date at job start Wed Apr 1 2020 02:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.49618 * 2 1 4 4 N 1.46497 * 109.47512 * 299.99944 * 3 2 1 5 5 C 1.34774 * 120.00437 * 180.02562 * 4 3 2 6 6 O 1.21514 * 119.99487 * 359.97438 * 5 4 3 7 7 C 1.48161 * 120.00229 * 179.97438 * 5 4 3 8 8 C 1.39314 * 119.72231 * 180.02562 * 7 5 4 9 9 C 1.38589 * 119.05737 * 179.76862 * 8 7 5 10 10 C 1.38627 * 118.48856 * 0.47100 * 9 8 7 11 11 C 1.50707 * 120.32347 * 179.75865 * 10 9 8 12 12 C 1.53000 * 117.49821 * 119.72485 * 11 10 9 13 13 C 1.52997 * 59.99999 * 107.48734 * 12 11 10 14 14 C 1.38561 * 119.35067 * 359.48324 * 10 9 8 15 15 N 1.31519 * 120.90537 * 0.29854 * 14 10 9 16 16 C 1.53045 * 109.49380 * 120.06725 * 2 1 3 17 17 C 1.53037 * 109.54234 * 58.65084 * 16 2 1 18 18 C 1.53196 * 109.33863 * 61.31530 * 17 16 2 19 19 N 1.46929 * 108.77464 * 305.38108 * 18 17 16 20 20 C 1.36940 * 120.62982 * 233.63166 * 19 18 17 21 21 H 1.07996 * 120.00238 * 27.66723 * 20 19 18 22 22 C 1.38810 * 119.99993 * 207.67212 * 20 19 18 23 23 N 1.31626 * 119.99981 * 17.35745 * 22 20 19 24 24 Si 1.86795 * 120.00302 * 197.36026 * 22 20 19 25 25 H 1.48502 * 109.47238 * 59.99626 * 24 22 20 26 26 H 1.48501 * 109.47671 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47046 * 299.99771 * 24 22 20 28 28 C 1.46920 * 118.73998 * 53.61129 * 19 18 17 29 29 H 1.09003 * 109.46970 * 60.00405 * 1 2 3 30 30 H 1.09000 * 109.47313 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47248 * 299.99886 * 1 2 3 32 32 H 1.09001 * 109.46634 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46980 * 60.00172 * 3 2 1 34 34 H 0.97003 * 119.99929 * 0.02562 * 4 3 2 35 35 H 1.07994 * 120.46858 * 359.97438 * 8 7 5 36 36 H 1.08000 * 120.75492 * 180.25185 * 9 8 7 37 37 H 1.08995 * 115.55762 * 334.03061 * 11 10 9 38 38 H 1.08999 * 117.49827 * 359.97438 * 12 11 10 39 39 H 1.08997 * 117.49786 * 214.97618 * 12 11 10 40 40 H 1.08996 * 117.50055 * 107.48881 * 13 12 11 41 41 H 1.09001 * 117.49806 * 252.48341 * 13 12 11 42 42 H 1.07997 * 119.54304 * 180.27455 * 14 10 9 43 43 H 1.08998 * 109.45648 * 178.63992 * 16 2 1 44 44 H 1.08993 * 109.45655 * 298.59646 * 16 2 1 45 45 H 1.09004 * 109.46845 * 301.36649 * 17 16 2 46 46 H 1.08992 * 109.50093 * 181.28568 * 17 16 2 47 47 H 1.08996 * 109.58690 * 185.59774 * 18 17 16 48 48 H 1.08992 * 109.70409 * 65.23751 * 18 17 16 49 49 H 0.96994 * 119.99949 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.58767 * 186.60417 * 28 19 18 51 51 H 1.08996 * 109.70691 * 66.24233 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 7 1.5527 2.1331 -1.1961 5 6 1.8793 3.4231 -1.4097 6 8 2.5781 4.0133 -0.6098 7 6 1.3862 4.1217 -2.6197 8 6 1.7278 5.4550 -2.8349 9 6 1.2630 6.0935 -3.9737 10 6 0.4643 5.3790 -4.8531 11 6 -0.0682 6.0343 -6.1014 12 6 0.3316 5.4229 -7.4457 13 6 -1.0969 5.2559 -6.9240 14 6 0.1650 4.0548 -4.5759 15 7 0.6232 3.4718 -3.4897 16 6 2.0408 -0.7228 1.2486 17 6 1.5043 -2.1560 1.2658 18 6 2.0153 -2.9039 0.0304 19 7 1.6522 -2.1380 -1.1698 20 6 0.9638 -2.7312 -2.1942 21 1 0.3083 -3.5655 -1.9925 22 6 1.1086 -2.2604 -3.4920 23 7 2.1330 -1.4951 -3.8040 24 14 -0.1504 -2.7128 -4.7957 25 1 -1.4893 -2.2207 -4.3828 26 1 0.2290 -2.0881 -6.0883 27 1 -0.1922 -4.1890 -4.9522 28 6 2.0413 -0.7235 -1.2498 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1307 1.4417 0.0005 33 1 1.6776 1.9562 0.8900 34 1 0.9945 1.6621 -1.8345 35 1 2.3487 5.9825 -2.1260 36 1 1.5144 7.1254 -4.1699 37 1 -0.1775 7.1177 -6.0538 38 1 0.9801 4.5469 -7.4273 39 1 0.4854 6.1041 -8.2826 40 1 -1.8830 5.8272 -7.4176 41 1 -1.3887 4.2697 -6.5627 42 1 -0.4532 3.4939 -5.2611 43 1 3.1305 -0.7436 1.2358 44 1 1.6982 -0.1956 2.1389 45 1 0.4145 -2.1361 1.2541 46 1 1.8497 -2.6630 2.1667 47 1 1.5571 -3.8918 -0.0142 48 1 3.0991 -3.0058 0.0847 49 1 2.2339 -1.1658 -4.7107 50 1 1.6003 -0.2729 -2.1389 51 1 3.1272 -0.6433 -1.2998 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699876821.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:33 Heat of formation + Delta-G solvation = 22.357934 kcal Electronic energy + Delta-G solvation = -30667.764875 eV Core-core repulsion = 26760.343659 eV Total energy + Delta-G solvation = -3907.421216 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.83825 -40.70571 -39.67459 -37.97286 -36.37209 -34.93711 -33.67440 -32.94582 -32.04350 -31.55310 -28.08602 -27.58418 -27.09399 -25.61137 -24.99444 -23.89944 -23.17967 -22.47551 -21.83404 -21.43190 -19.84893 -18.97133 -18.49428 -18.12942 -17.09206 -16.81617 -16.49209 -16.48738 -16.06411 -15.75534 -15.65859 -15.44690 -15.29390 -15.09569 -14.77339 -14.67542 -14.34699 -14.16868 -13.79623 -13.74723 -13.73085 -13.12769 -13.02290 -12.75865 -12.71350 -12.57077 -12.37023 -12.29446 -12.18102 -12.04985 -11.85801 -11.73973 -11.50996 -11.40741 -11.31704 -11.11641 -10.97407 -10.83307 -10.52898 -10.49169 -10.16802 -9.80818 -8.62127 -7.82691 -5.27303 -0.46813 0.19169 1.46472 1.48752 1.54941 1.60514 2.10905 2.53185 2.66911 3.04181 3.08848 3.30454 3.51154 3.60417 3.71055 3.84798 3.86653 3.94104 3.99119 4.03182 4.04129 4.09713 4.29301 4.30824 4.36697 4.50951 4.53877 4.65944 4.69274 4.73393 4.80274 4.82483 4.92711 4.99957 5.01495 5.04077 5.05412 5.10309 5.17441 5.23836 5.25145 5.28125 5.30737 5.40009 5.46504 5.49702 5.54270 5.63410 5.72948 5.78917 6.36154 6.42205 6.73914 7.07373 7.18852 7.90867 8.43029 9.22111 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009860 B = 0.003712 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.085451 B = 7540.461776 C = 9856.283416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.091 4.091 3 C 0.138 3.862 4 N -0.698 5.698 5 C 0.563 3.437 6 O -0.570 6.570 7 C 0.044 3.956 8 C -0.108 4.108 9 C -0.071 4.071 10 C -0.073 4.073 11 C -0.121 4.121 12 C -0.166 4.166 13 C -0.174 4.174 14 C 0.082 3.918 15 N -0.477 5.477 16 C -0.094 4.094 17 C -0.123 4.123 18 C 0.136 3.864 19 N -0.604 5.604 20 C -0.259 4.259 21 H 0.065 0.935 22 C -0.043 4.043 23 N -0.929 5.929 24 Si 0.957 3.043 25 H -0.277 1.277 26 H -0.296 1.296 27 H -0.278 1.278 28 C 0.199 3.801 29 H 0.032 0.968 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.411 0.589 35 H 0.155 0.845 36 H 0.181 0.819 37 H 0.144 0.856 38 H 0.082 0.918 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.092 0.908 42 H 0.168 0.832 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.007 0.993 49 H 0.247 0.753 50 H 0.061 0.939 51 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.779 16.613 -0.733 17.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C 0.014 3.986 4 N -0.348 5.348 5 C 0.349 3.651 6 O -0.451 6.451 7 C -0.093 4.093 8 C -0.129 4.129 9 C -0.096 4.096 10 C -0.075 4.075 11 C -0.140 4.140 12 C -0.203 4.203 13 C -0.211 4.211 14 C -0.078 4.078 15 N -0.188 5.188 16 C -0.132 4.132 17 C -0.162 4.162 18 C 0.011 3.989 19 N -0.326 5.326 20 C -0.389 4.389 21 H 0.083 0.917 22 C -0.239 4.239 23 N -0.575 5.575 24 Si 0.785 3.215 25 H -0.203 1.203 26 H -0.223 1.223 27 H -0.204 1.204 28 C 0.073 3.927 29 H 0.051 0.949 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.249 0.751 35 H 0.173 0.827 36 H 0.199 0.801 37 H 0.161 0.839 38 H 0.101 0.899 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.110 0.890 42 H 0.185 0.815 43 H 0.071 0.929 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.071 0.929 48 H 0.025 0.975 49 H 0.056 0.944 50 H 0.079 0.921 51 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -5.430 16.119 -0.088 17.010 hybrid contribution -0.125 -0.091 -1.439 1.448 sum -5.555 16.028 -1.527 17.032 Atomic orbital electron populations 1.21626 0.93690 1.01860 1.00286 1.21350 0.96954 0.92619 0.98389 1.21424 0.98305 0.91844 0.87015 1.46023 1.51775 1.11308 1.25678 1.18240 0.79866 0.82042 0.84933 1.90700 1.39853 1.67222 1.47277 1.21081 0.99435 0.93535 0.95220 1.22263 0.98571 0.93359 0.98702 1.21795 0.94272 1.02050 0.91482 1.20668 0.96115 0.94164 0.96590 1.21093 1.04927 0.99993 0.87976 1.23119 0.98213 1.03086 0.95853 1.23196 0.93167 1.01953 1.02754 1.23013 0.97950 0.93286 0.93578 1.67525 1.08621 1.39097 1.03515 1.21376 0.99818 0.95932 0.96063 1.21921 1.00980 0.95525 0.97738 1.21114 0.95988 0.94634 0.87212 1.44210 1.65267 1.06335 1.16828 1.19409 1.17925 1.14931 0.86640 0.91741 1.25652 0.98470 1.01070 0.98682 1.70186 1.28979 1.39724 1.18629 0.85506 0.79637 0.77807 0.78527 1.20328 1.22274 1.20400 1.20503 0.93606 0.83834 0.94800 0.94879 0.92359 0.91692 0.92818 0.90243 0.75128 0.82729 0.80128 0.83877 0.89929 0.86133 0.86132 0.88954 0.81466 0.92879 0.90052 0.91743 0.89963 0.92949 0.97458 0.94431 0.92081 1.00283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.13 7.81 71.98 0.56 -3.56 16 2 C -0.09 -3.35 0.53 -52.10 -0.03 -3.38 16 3 C 0.14 4.90 4.57 86.38 0.39 5.29 16 4 N -0.70 -26.38 4.98 -465.69 -2.32 -28.70 16 5 C 0.56 21.11 7.81 86.88 0.68 21.79 16 6 O -0.57 -22.92 16.32 -3.76 -0.06 -22.98 16 7 C 0.04 1.46 6.75 41.91 0.28 1.74 16 8 C -0.11 -2.76 9.63 22.61 0.22 -2.54 16 9 C -0.07 -1.32 9.88 22.45 0.22 -1.10 16 10 C -0.07 -1.45 5.63 -19.69 -0.11 -1.56 16 11 C -0.12 -1.60 6.06 -11.54 -0.07 -1.67 16 12 C -0.17 -2.16 10.17 30.59 0.31 -1.85 16 13 C -0.17 -2.18 9.87 30.59 0.30 -1.88 16 14 C 0.08 2.15 10.47 84.82 0.89 3.03 16 15 N -0.48 -15.88 9.54 -184.92 -1.76 -17.65 16 16 C -0.09 -2.96 4.71 30.62 0.14 -2.82 16 17 C -0.12 -3.93 5.74 30.67 0.18 -3.75 16 18 C 0.14 5.60 6.52 86.36 0.56 6.17 16 19 N -0.60 -29.96 2.43 -699.11 -1.70 -31.66 16 20 C -0.26 -14.11 9.59 84.03 0.81 -13.30 16 21 H 0.06 3.44 7.89 -2.91 -0.02 3.41 16 22 C -0.04 -2.39 4.91 84.86 0.42 -1.98 16 23 N -0.93 -55.14 11.19 21.65 0.24 -54.90 16 24 Si 0.96 44.92 29.59 68.60 2.03 46.95 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 28 C 0.20 9.52 3.73 86.37 0.32 9.84 16 29 H 0.03 1.23 6.86 -2.39 -0.02 1.21 16 30 H 0.06 2.22 5.97 -2.39 -0.01 2.20 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.41 16.62 5.55 -92.71 -0.51 16.11 16 35 H 0.16 3.64 7.64 -2.91 -0.02 3.62 16 36 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 37 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.09 1.35 6.20 -2.39 -0.01 1.33 16 42 H 0.17 3.89 6.03 -2.91 -0.02 3.87 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.06 2.07 6.34 -2.39 -0.02 2.05 16 46 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 48 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 49 H 0.25 14.41 8.31 -92.71 -0.77 13.63 16 50 H 0.06 3.29 4.94 -2.39 -0.01 3.28 16 51 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 Total: -1.00 -69.88 399.17 2.93 -66.95 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: 0.42 Total: 33.51 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: 6.08 Total: 8.48 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -5.55 Total: -132.91 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.06 Total: -22.98 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -69.88 2.93 -66.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699876821.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.311 kcal (2) G-P(sol) polarization free energy of solvation -69.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds