Wall clock time and date at job start Wed Apr 1 2020 02:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38229 * 120.41815 * 2 1 4 4 N 1.31855 * 120.75821 * 180.02562 * 3 2 1 5 5 C 1.31881 * 121.72575 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.77010 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.42199 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47291 * 89.99744 * 7 6 5 9 9 C 1.50703 * 109.46946 * 180.02562 * 8 7 6 10 10 O 1.21275 * 119.99885 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99748 * 179.72287 * 9 8 7 12 12 C 1.46496 * 119.99907 * 180.27546 * 11 9 8 13 13 H 1.08997 * 115.55223 * 9.29793 * 12 11 9 14 14 C 1.53031 * 117.50212 * 223.61039 * 12 11 9 15 15 C 1.52816 * 117.50002 * 155.03022 * 12 11 9 16 16 C 1.53180 * 117.71691 * 359.85867 * 15 12 11 17 17 C 1.53347 * 108.77512 * 158.89108 * 16 15 12 18 18 N 1.46847 * 108.81460 * 51.30623 * 17 16 15 19 19 C 1.36933 * 120.38129 * 123.12511 * 18 17 16 20 20 H 1.08003 * 120.00117 * 208.88553 * 19 18 17 21 21 C 1.38811 * 120.00147 * 28.88552 * 19 18 17 22 22 N 1.31615 * 120.00294 * 17.85061 * 21 19 18 23 23 Si 1.86805 * 119.99971 * 197.85381 * 21 19 18 24 24 H 1.48498 * 109.47224 * 89.99820 * 23 21 19 25 25 H 1.48504 * 109.47167 * 210.00083 * 23 21 19 26 26 H 1.48502 * 109.47157 * 329.99923 * 23 21 19 27 27 C 1.46838 * 119.23312 * 303.10100 * 18 17 16 28 28 C 1.53192 * 117.71316 * 215.09973 * 15 12 11 29 29 C 1.38627 * 120.41376 * 180.29645 * 2 1 3 30 30 H 1.08994 * 109.47204 * 89.99948 * 1 2 3 31 31 H 1.08996 * 109.47641 * 210.00588 * 1 2 3 32 32 H 1.09007 * 109.47003 * 330.00027 * 1 2 3 33 33 H 1.07993 * 119.62252 * 359.97438 * 3 2 1 34 34 H 1.08008 * 119.61611 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.46876 * 329.99876 * 7 6 5 36 36 H 1.08995 * 109.47444 * 210.00228 * 7 6 5 37 37 H 1.08998 * 109.47053 * 60.00241 * 8 7 6 38 38 H 1.08995 * 109.47271 * 300.00589 * 8 7 6 39 39 H 0.96999 * 119.99550 * 0.28519 * 11 9 8 40 40 H 1.09003 * 117.50350 * 0.02562 * 14 12 11 41 41 H 1.09001 * 117.50100 * 145.01474 * 14 12 11 42 42 H 1.09000 * 109.59121 * 278.67773 * 16 15 12 43 43 H 1.08999 * 109.59009 * 39.10315 * 16 15 12 44 44 H 1.09005 * 109.57981 * 291.50619 * 17 16 15 45 45 H 1.09003 * 109.58289 * 171.10813 * 17 16 15 46 46 H 0.97003 * 120.00397 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.58091 * 297.10995 * 27 18 17 48 48 H 1.09001 * 109.58445 * 176.70129 * 27 18 17 49 49 H 1.09001 * 109.58114 * 320.89874 * 28 15 12 50 50 H 1.08991 * 109.58686 * 81.33118 * 28 15 12 51 51 H 1.07990 * 120.79490 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0822 -0.0015 6 6 3.5948 -1.1471 -0.0026 7 6 4.4026 -2.4193 -0.0044 8 6 4.6766 -2.8515 1.4375 9 6 5.4850 -4.1234 1.4357 10 8 5.8102 -4.6336 0.3846 11 7 5.8516 -4.6904 2.6021 12 6 6.6425 -5.9235 2.6003 13 1 7.0277 -6.2336 1.6290 14 6 6.2383 -7.0238 3.5842 15 6 7.5080 -6.2084 3.8271 16 6 7.4886 -5.1844 4.9661 17 6 7.9591 -5.8702 6.2544 18 7 9.2313 -6.5540 5.9895 19 6 10.3432 -6.2605 6.7328 20 1 11.3265 -6.3666 6.2988 21 6 10.2067 -5.8264 8.0443 22 7 9.0763 -6.0244 8.6887 23 14 11.6274 -4.9613 8.8944 24 1 11.5266 -3.4981 8.6616 25 1 11.5724 -5.2354 10.3529 26 1 12.9126 -5.4625 8.3446 27 6 9.2972 -7.5565 4.9187 28 6 8.8540 -6.9049 3.6031 29 6 2.2088 -1.1955 -0.0062 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6676 2.1277 -0.0004 34 1 5.3047 0.1284 -0.0023 35 1 5.3484 -2.2484 -0.5184 36 1 3.8459 -3.2025 -0.5189 37 1 3.7308 -3.0224 1.9516 38 1 5.2333 -2.0683 1.9520 39 1 5.5916 -4.2821 3.4426 40 1 5.3836 -6.8302 4.2325 41 1 6.3577 -8.0576 3.2600 42 1 8.1581 -4.3584 4.7264 43 1 6.4747 -4.8080 5.1018 44 1 7.2130 -6.5977 6.5744 45 1 8.1016 -5.1229 7.0350 46 1 8.9811 -5.7214 9.6053 47 1 8.6340 -8.3884 5.1558 48 1 10.3204 -7.9191 4.8200 49 1 8.7460 -7.6700 2.8344 50 1 9.5972 -6.1716 3.2900 51 1 1.6887 -2.1419 -0.0107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713095333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:53 Heat of formation + Delta-G solvation = 26.073231 kcal Electronic energy + Delta-G solvation = -28926.809778 eV Core-core repulsion = 25019.549670 eV Total energy + Delta-G solvation = -3907.260108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.71667 -39.97330 -38.48551 -35.56744 -34.85904 -33.95669 -33.19301 -31.57422 -30.44513 -30.13384 -28.24966 -27.69822 -25.53562 -24.35869 -23.41063 -22.49887 -22.10625 -21.21967 -20.66983 -20.22865 -18.24505 -17.41577 -17.20364 -17.05157 -16.60381 -15.91791 -15.53299 -14.97894 -14.74504 -14.68256 -14.16941 -14.06214 -13.63317 -13.53193 -13.50514 -13.40960 -13.34434 -13.18863 -13.01632 -12.80634 -12.64280 -12.42997 -12.29486 -11.86698 -11.73611 -11.52638 -11.40597 -11.32620 -10.97943 -10.75812 -10.51084 -10.30343 -10.09996 -9.98538 -9.85365 -9.74660 -9.72182 -9.60469 -9.38010 -9.13168 -8.49527 -8.45771 -6.66214 -5.81088 -3.24084 0.72773 0.91917 2.53388 3.05890 3.36267 3.43652 3.44119 3.44659 4.07650 4.16049 4.32924 4.36455 4.48156 4.58515 4.60245 4.65073 4.74598 4.81841 4.97573 5.02504 5.11580 5.12357 5.13465 5.20672 5.25799 5.36935 5.37258 5.49090 5.50349 5.61316 5.61709 5.79635 5.85536 5.86147 5.97111 6.02834 6.08379 6.09771 6.26222 6.36955 6.42537 6.54241 6.56598 6.63133 6.68781 6.81347 6.97999 7.31124 7.48554 7.62029 7.64432 7.78205 8.17770 8.44443 9.19903 9.83451 10.40078 11.26683 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.001927 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.353787 B =14525.621550 C =15545.562095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.137 4.137 3 C 0.091 3.909 4 N -0.480 5.480 5 C 0.096 3.904 6 C -0.127 4.127 7 C -0.060 4.060 8 C -0.136 4.136 9 C 0.515 3.485 10 O -0.545 6.545 11 N -0.695 5.695 12 C 0.068 3.932 13 H 0.131 0.869 14 C -0.183 4.183 15 C -0.097 4.097 16 C -0.104 4.104 17 C 0.173 3.827 18 N -0.589 5.589 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.149 3.851 28 C -0.098 4.098 29 C -0.075 4.075 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.402 0.598 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.043 0.957 44 H 0.018 0.982 45 H 0.090 0.910 46 H 0.253 0.747 47 H 0.019 0.981 48 H 0.055 0.945 49 H 0.053 0.947 50 H 0.063 0.937 51 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.893 9.092 -16.579 25.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.139 4.139 3 C -0.066 4.066 4 N -0.187 5.187 5 C -0.061 4.061 6 C -0.129 4.129 7 C -0.098 4.098 8 C -0.176 4.176 9 C 0.302 3.698 10 O -0.423 6.423 11 N -0.345 5.345 12 C -0.037 4.037 13 H 0.148 0.852 14 C -0.222 4.222 15 C -0.098 4.098 16 C -0.144 4.144 17 C 0.047 3.953 18 N -0.311 5.311 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.023 3.977 28 C -0.138 4.138 29 C -0.101 4.101 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.104 0.896 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.238 0.762 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.079 0.921 43 H 0.062 0.938 44 H 0.036 0.964 45 H 0.108 0.892 46 H 0.063 0.937 47 H 0.037 0.963 48 H 0.073 0.927 49 H 0.071 0.929 50 H 0.082 0.918 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -16.238 9.576 -17.149 25.484 hybrid contribution -0.005 -0.199 1.034 1.053 sum -16.243 9.377 -16.115 24.727 Atomic orbital electron populations 1.20733 0.90170 1.03246 1.02649 1.20958 0.97628 0.94162 1.01106 1.22677 0.90008 0.97474 0.96491 1.67694 1.08347 1.31272 1.11367 1.22726 1.00438 0.87105 0.95859 1.20939 0.94523 0.96747 1.00684 1.20258 1.00452 0.93428 0.95691 1.21658 1.01142 0.95862 0.98929 1.20576 0.79831 0.85732 0.83678 1.90688 1.55847 1.64568 1.31193 1.45449 1.54234 1.26159 1.08629 1.21877 0.99005 0.86090 0.96776 0.85176 1.23520 0.99401 0.96689 1.02542 1.21947 0.92338 0.99872 0.95642 1.21808 0.98977 0.96847 0.96742 1.20751 0.86421 0.95670 0.92453 1.43968 1.08232 1.41934 1.37010 1.19213 0.86479 1.40234 0.92276 0.91728 1.25048 0.97111 1.01684 0.95818 1.70032 1.25711 1.48256 1.10644 0.86305 0.82123 0.79858 0.78586 1.21453 1.21796 1.20411 1.20859 0.98469 0.91024 0.87394 1.21694 0.94071 0.98722 0.99274 1.21438 0.93448 0.98302 0.96879 0.90864 0.91229 0.91100 0.82976 0.82708 0.89585 0.89860 0.88799 0.88511 0.76231 0.88977 0.88519 0.92060 0.93819 0.96420 0.89215 0.93653 0.96263 0.92651 0.92872 0.91830 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 10.04 36.01 0.36 -0.13 16 2 C -0.14 -0.97 5.90 -104.48 -0.62 -1.59 16 3 C 0.09 0.75 10.86 -17.55 -0.19 0.56 16 4 N -0.48 -4.93 10.36 -13.25 -0.14 -5.07 16 5 C 0.10 0.88 10.86 -17.55 -0.19 0.68 16 6 C -0.13 -1.04 5.15 -104.48 -0.54 -1.58 16 7 C -0.06 -0.50 4.66 -27.88 -0.13 -0.63 16 8 C -0.14 -1.13 5.68 -27.88 -0.16 -1.28 16 9 C 0.52 6.22 7.83 -10.98 -0.09 6.14 16 10 O -0.55 -8.52 15.55 5.56 0.09 -8.44 16 11 N -0.70 -8.45 5.35 -53.89 -0.29 -8.73 16 12 C 0.07 0.96 6.14 -68.01 -0.42 0.55 16 13 H 0.13 1.97 7.40 -51.93 -0.38 1.59 16 14 C -0.18 -2.58 9.86 -26.80 -0.26 -2.84 16 15 C -0.10 -1.55 1.94 -154.49 -0.30 -1.85 16 16 C -0.10 -1.86 5.37 -26.46 -0.14 -2.00 16 17 C 0.17 3.95 5.40 -3.67 -0.02 3.93 16 18 N -0.59 -14.38 2.94 -172.26 -0.51 -14.89 16 19 C -0.25 -6.81 9.54 -15.06 -0.14 -6.95 16 20 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 21 C 0.00 0.05 4.88 -17.43 -0.09 -0.03 16 22 N -0.90 -25.70 11.23 55.49 0.62 -25.08 16 23 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 27 C 0.15 3.06 6.51 -3.67 -0.02 3.04 16 28 C -0.10 -1.68 5.83 -26.45 -0.15 -1.83 16 29 C -0.07 -0.56 9.55 -39.28 -0.37 -0.93 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 32 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 33 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.16 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 36 H 0.08 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.40 4.23 7.12 -40.82 -0.29 3.94 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.04 0.66 6.75 -51.93 -0.35 0.31 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.09 2.31 5.93 -51.93 -0.31 2.00 16 46 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.05 1.12 7.92 -51.93 -0.41 0.71 16 49 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 50 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 51 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 LS Contribution 411.51 15.07 6.20 6.20 Total: -1.00 -32.23 411.51 -10.99 -43.22 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -8.46 Total: 3.13 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.47 Total: -6.75 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.31 Total: -53.77 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.09 Total: -8.44 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.23 -10.99 -43.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713095333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.294 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds