Wall clock time and date at job start Wed Apr 1 2020 02:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38229 * 120.41815 * 2 1 4 4 N 1.31855 * 120.75821 * 180.02562 * 3 2 1 5 5 C 1.31881 * 121.72575 * 0.02562 * 4 3 2 6 6 C 1.38176 * 120.77010 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.42199 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.47291 * 89.99744 * 7 6 5 9 9 C 1.50703 * 109.46946 * 180.02562 * 8 7 6 10 10 O 1.21275 * 119.99885 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99748 * 179.72287 * 9 8 7 12 12 C 1.46496 * 119.99907 * 180.27546 * 11 9 8 13 13 H 1.08997 * 115.55223 * 9.29793 * 12 11 9 14 14 C 1.53031 * 117.50212 * 223.61039 * 12 11 9 15 15 C 1.52816 * 117.50002 * 155.03022 * 12 11 9 16 16 C 1.53180 * 117.71691 * 359.85867 * 15 12 11 17 17 C 1.53347 * 108.77512 * 158.89108 * 16 15 12 18 18 N 1.46847 * 108.81460 * 51.30623 * 17 16 15 19 19 C 1.36933 * 120.38129 * 123.12511 * 18 17 16 20 20 H 1.08003 * 120.00117 * 208.88553 * 19 18 17 21 21 C 1.38811 * 120.00147 * 28.88552 * 19 18 17 22 22 N 1.31615 * 120.00294 * 17.85061 * 21 19 18 23 23 Si 1.86805 * 119.99971 * 197.85381 * 21 19 18 24 24 H 1.48498 * 109.47224 * 89.99820 * 23 21 19 25 25 H 1.48504 * 109.47167 * 210.00083 * 23 21 19 26 26 H 1.48502 * 109.47157 * 329.99923 * 23 21 19 27 27 C 1.46838 * 119.23312 * 303.10100 * 18 17 16 28 28 C 1.53192 * 117.71316 * 215.09973 * 15 12 11 29 29 C 1.38627 * 120.41376 * 180.29645 * 2 1 3 30 30 H 1.08994 * 109.47204 * 89.99948 * 1 2 3 31 31 H 1.08996 * 109.47641 * 210.00588 * 1 2 3 32 32 H 1.09007 * 109.47003 * 330.00027 * 1 2 3 33 33 H 1.07993 * 119.62252 * 359.97438 * 3 2 1 34 34 H 1.08008 * 119.61611 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.46876 * 329.99876 * 7 6 5 36 36 H 1.08995 * 109.47444 * 210.00228 * 7 6 5 37 37 H 1.08998 * 109.47053 * 60.00241 * 8 7 6 38 38 H 1.08995 * 109.47271 * 300.00589 * 8 7 6 39 39 H 0.96999 * 119.99550 * 0.28519 * 11 9 8 40 40 H 1.09003 * 117.50350 * 0.02562 * 14 12 11 41 41 H 1.09001 * 117.50100 * 145.01474 * 14 12 11 42 42 H 1.09000 * 109.59121 * 278.67773 * 16 15 12 43 43 H 1.08999 * 109.59009 * 39.10315 * 16 15 12 44 44 H 1.09005 * 109.57981 * 291.50619 * 17 16 15 45 45 H 1.09003 * 109.58289 * 171.10813 * 17 16 15 46 46 H 0.97003 * 120.00397 * 179.97438 * 22 21 19 47 47 H 1.08999 * 109.58091 * 297.10995 * 27 18 17 48 48 H 1.09001 * 109.58445 * 176.70129 * 27 18 17 49 49 H 1.09001 * 109.58114 * 320.89874 * 28 15 12 50 50 H 1.08991 * 109.58686 * 81.33118 * 28 15 12 51 51 H 1.07990 * 120.79490 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0822 -0.0015 6 6 3.5948 -1.1471 -0.0026 7 6 4.4026 -2.4193 -0.0044 8 6 4.6766 -2.8515 1.4375 9 6 5.4850 -4.1234 1.4357 10 8 5.8102 -4.6336 0.3846 11 7 5.8516 -4.6904 2.6021 12 6 6.6425 -5.9235 2.6003 13 1 7.0277 -6.2336 1.6290 14 6 6.2383 -7.0238 3.5842 15 6 7.5080 -6.2084 3.8271 16 6 7.4886 -5.1844 4.9661 17 6 7.9591 -5.8702 6.2544 18 7 9.2313 -6.5540 5.9895 19 6 10.3432 -6.2605 6.7328 20 1 11.3265 -6.3666 6.2988 21 6 10.2067 -5.8264 8.0443 22 7 9.0763 -6.0244 8.6887 23 14 11.6274 -4.9613 8.8944 24 1 11.5266 -3.4981 8.6616 25 1 11.5724 -5.2354 10.3529 26 1 12.9126 -5.4625 8.3446 27 6 9.2972 -7.5565 4.9187 28 6 8.8540 -6.9049 3.6031 29 6 2.2088 -1.1955 -0.0062 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6676 2.1277 -0.0004 34 1 5.3047 0.1284 -0.0023 35 1 5.3484 -2.2484 -0.5184 36 1 3.8459 -3.2025 -0.5189 37 1 3.7308 -3.0224 1.9516 38 1 5.2333 -2.0683 1.9520 39 1 5.5916 -4.2821 3.4426 40 1 5.3836 -6.8302 4.2325 41 1 6.3577 -8.0576 3.2600 42 1 8.1581 -4.3584 4.7264 43 1 6.4747 -4.8080 5.1018 44 1 7.2130 -6.5977 6.5744 45 1 8.1016 -5.1229 7.0350 46 1 8.9811 -5.7214 9.6053 47 1 8.6340 -8.3884 5.1558 48 1 10.3204 -7.9191 4.8200 49 1 8.7460 -7.6700 2.8344 50 1 9.5972 -6.1716 3.2900 51 1 1.6887 -2.1419 -0.0107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713095333.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:52 Heat of formation + Delta-G solvation = 8.124593 kcal Electronic energy + Delta-G solvation = -28927.588090 eV Core-core repulsion = 25019.549670 eV Total energy + Delta-G solvation = -3908.038420 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.38628 -40.99068 -39.73630 -37.14691 -35.57021 -34.53146 -34.47934 -33.24961 -31.74333 -31.19740 -29.84862 -28.15071 -26.36047 -26.12387 -24.10131 -23.98909 -23.20631 -22.47081 -21.67312 -21.17368 -19.80972 -18.49366 -18.11178 -17.82060 -17.66120 -17.15741 -16.79617 -16.36618 -15.82605 -15.52539 -15.37156 -15.21930 -15.06972 -14.77661 -14.59983 -14.32471 -14.09841 -14.02851 -13.95025 -13.73200 -13.66341 -13.33059 -13.18691 -13.10150 -13.04095 -12.90382 -12.59845 -12.51954 -12.42396 -12.29554 -11.98128 -11.97110 -11.77963 -11.36114 -11.25976 -11.01682 -10.68790 -10.52125 -10.46189 -10.36219 -9.71897 -9.63988 -8.61760 -7.86334 -5.32240 0.14089 0.33742 1.46331 1.47999 1.56371 1.58603 2.12116 2.51438 2.82816 2.96640 3.28134 3.47719 3.64554 3.69116 3.83902 3.84352 3.87931 3.95358 4.00089 4.05756 4.07520 4.14207 4.19207 4.21583 4.45885 4.53539 4.59646 4.68284 4.71028 4.71908 4.83445 4.86020 4.87838 4.91892 4.97020 4.98674 5.01178 5.10068 5.15074 5.22814 5.24091 5.31436 5.33459 5.37844 5.38097 5.52942 5.56161 5.66170 5.79338 5.81775 6.41433 6.54348 7.03927 7.17044 7.23998 7.89204 8.39843 9.18450 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.001927 C = 0.001801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.353787 B =14525.621550 C =15545.562095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.135 4.135 3 C 0.076 3.924 4 N -0.509 5.509 5 C 0.078 3.922 6 C -0.126 4.126 7 C -0.053 4.053 8 C -0.126 4.126 9 C 0.515 3.485 10 O -0.582 6.582 11 N -0.692 5.692 12 C 0.087 3.913 13 H 0.124 0.876 14 C -0.171 4.171 15 C -0.118 4.118 16 C -0.088 4.088 17 C 0.179 3.821 18 N -0.608 5.608 19 C -0.262 4.262 20 H 0.062 0.938 21 C -0.049 4.049 22 N -0.932 5.932 23 Si 0.963 3.037 24 H -0.285 1.285 25 H -0.295 1.295 26 H -0.271 1.271 27 C 0.146 3.854 28 C -0.087 4.087 29 C -0.080 4.080 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.170 0.830 34 H 0.160 0.840 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.117 0.883 38 H 0.109 0.891 39 H 0.412 0.588 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.049 0.951 43 H 0.072 0.928 44 H -0.001 1.001 45 H 0.055 0.945 46 H 0.250 0.750 47 H 0.017 0.983 48 H 0.051 0.949 49 H 0.080 0.920 50 H 0.053 0.947 51 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.541 9.514 -17.669 27.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.137 4.137 3 C -0.081 4.081 4 N -0.217 5.217 5 C -0.079 4.079 6 C -0.128 4.128 7 C -0.091 4.091 8 C -0.166 4.166 9 C 0.304 3.696 10 O -0.462 6.462 11 N -0.342 5.342 12 C -0.020 4.020 13 H 0.142 0.858 14 C -0.209 4.209 15 C -0.119 4.119 16 C -0.127 4.127 17 C 0.053 3.947 18 N -0.331 5.331 19 C -0.393 4.393 20 H 0.080 0.920 21 C -0.244 4.244 22 N -0.578 5.578 23 Si 0.792 3.208 24 H -0.212 1.212 25 H -0.221 1.221 26 H -0.196 1.196 27 C 0.020 3.980 28 C -0.126 4.126 29 C -0.106 4.106 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.187 0.813 34 H 0.177 0.823 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.249 0.751 40 H 0.119 0.881 41 H 0.126 0.874 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.017 0.983 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.035 0.965 48 H 0.069 0.931 49 H 0.099 0.901 50 H 0.072 0.928 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -17.892 10.003 -18.254 27.448 hybrid contribution 0.475 -0.366 1.333 1.462 sum -17.417 9.637 -16.921 26.126 Atomic orbital electron populations 1.20791 0.88145 1.04208 1.03463 1.21253 0.99077 0.93585 0.99767 1.23069 0.89665 0.98876 0.96446 1.67674 1.09529 1.32025 1.12505 1.22885 1.00898 0.87426 0.96645 1.20883 0.94951 0.96120 1.00885 1.20152 0.99947 0.93372 0.95632 1.21658 1.01652 0.94006 0.99285 1.21184 0.79291 0.86273 0.82832 1.90679 1.57314 1.65773 1.32449 1.45447 1.53803 1.25622 1.09349 1.21657 0.97899 0.86908 0.95504 0.85788 1.23596 0.98066 0.97223 1.02009 1.21795 0.92834 1.00807 0.96476 1.21527 1.00022 0.96447 0.94707 1.20567 0.85584 0.94443 0.94109 1.44236 1.08021 1.43281 1.37591 1.19493 0.87346 1.39769 0.92681 0.92034 1.25746 0.99428 1.02722 0.96519 1.70171 1.27459 1.49476 1.10654 0.85332 0.79715 0.78660 0.77136 1.21202 1.22142 1.19576 1.20981 0.98429 0.90539 0.88035 1.21522 0.94443 0.99021 0.97663 1.21730 0.93225 0.99325 0.96333 0.89998 0.90355 0.90097 0.81303 0.82268 0.90643 0.90129 0.86501 0.87238 0.75105 0.88133 0.87436 0.93236 0.90943 0.98269 0.92676 0.94089 0.96456 0.93067 0.90142 0.92847 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.04 71.24 0.71 0.03 16 2 C -0.13 -1.66 5.90 -19.77 -0.12 -1.77 16 3 C 0.08 1.17 10.86 84.69 0.92 2.09 16 4 N -0.51 -10.22 10.36 -195.85 -2.03 -12.25 16 5 C 0.08 1.38 10.86 84.67 0.92 2.30 16 6 C -0.13 -1.90 5.15 -19.77 -0.10 -2.00 16 7 C -0.05 -0.79 4.66 29.85 0.14 -0.66 16 8 C -0.13 -1.78 5.68 29.85 0.17 -1.61 16 9 C 0.52 11.35 7.83 87.66 0.69 12.04 16 10 O -0.58 -17.36 15.55 -3.01 -0.05 -17.41 16 11 N -0.69 -15.05 5.35 -442.79 -2.37 -17.42 16 12 C 0.09 2.24 6.14 44.94 0.28 2.52 16 13 H 0.12 3.48 7.40 -2.39 -0.02 3.46 16 14 C -0.17 -4.35 9.86 30.55 0.30 -4.05 16 15 C -0.12 -3.57 1.94 -52.17 -0.10 -3.68 16 16 C -0.09 -3.04 5.37 30.77 0.17 -2.88 16 17 C 0.18 8.29 5.40 86.43 0.47 8.76 16 18 N -0.61 -30.12 2.94 -698.90 -2.05 -32.18 16 19 C -0.26 -14.41 9.54 84.03 0.80 -13.60 16 20 H 0.06 3.33 7.89 -2.91 -0.02 3.31 16 21 C -0.05 -2.70 4.88 84.86 0.41 -2.28 16 22 N -0.93 -54.40 11.23 21.65 0.24 -54.16 16 23 Si 0.96 44.70 29.59 68.60 2.03 46.73 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 C 0.15 5.96 6.51 86.43 0.56 6.53 16 28 C -0.09 -2.87 5.83 30.78 0.18 -2.69 16 29 C -0.08 -1.03 9.55 22.47 0.21 -0.81 16 30 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.08 0.38 8.10 -2.39 -0.02 0.36 16 32 H 0.08 0.36 8.09 -2.38 -0.02 0.34 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.16 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.07 1.30 8.05 -2.39 -0.02 1.28 16 36 H 0.08 1.27 8.05 -2.39 -0.02 1.25 16 37 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.41 7.42 7.12 -92.71 -0.66 6.76 16 40 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 42 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.07 2.05 6.75 -2.39 -0.02 2.04 16 44 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 45 H 0.05 2.93 5.93 -2.39 -0.01 2.91 16 46 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 47 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.05 2.08 7.92 -2.39 -0.02 2.06 16 49 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 50 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.15 1.30 8.06 -2.92 -0.02 1.28 16 Total: -1.00 -71.01 411.51 2.65 -68.37 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.26 Total: 20.08 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 6.61 Total: -1.77 kcal Atomic # 7 Polarization: -109.79 SS G_CDS: -6.20 Total: -115.99 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.05 Total: -17.41 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -71.01 2.65 -68.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713095333.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.490 kcal (2) G-P(sol) polarization free energy of solvation -71.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds