Wall clock time and date at job start Wed Apr 1 2020 02:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46744 * 269.37718 * 3 2 1 5 5 C 1.34776 * 120.00191 * 93.35512 * 4 3 2 6 6 O 1.21625 * 120.00463 * 185.66467 * 5 4 3 7 7 C 1.47266 * 119.99620 * 5.38616 * 5 4 3 8 8 C 1.46684 * 126.94749 * 314.92977 * 7 5 4 9 9 C 1.34482 * 106.33537 * 180.02562 * 8 7 5 10 10 C 1.50704 * 125.57174 * 179.97438 * 9 8 7 11 11 N 1.36444 * 108.85782 * 359.97438 * 9 8 7 12 12 C 1.46497 * 124.85338 * 179.97438 * 11 9 8 13 13 C 1.34669 * 110.29854 * 359.72750 * 11 9 8 14 14 C 1.50689 * 125.80484 * 180.28076 * 13 11 9 15 15 C 1.46495 * 120.00060 * 273.35012 * 4 3 2 16 16 C 1.53049 * 109.46030 * 60.07322 * 15 4 3 17 17 C 1.53187 * 109.31195 * 178.61664 * 16 15 4 18 18 N 1.46922 * 108.78326 * 54.63358 * 17 16 15 19 19 C 1.36932 * 120.63480 * 126.40786 * 18 17 16 20 20 H 1.07995 * 120.00010 * 331.38740 * 19 18 17 21 21 C 1.38816 * 120.00105 * 151.38510 * 19 18 17 22 22 N 1.31628 * 119.99795 * 344.06925 * 21 19 18 23 23 Si 1.86799 * 120.00194 * 164.07309 * 21 19 18 24 24 H 1.48494 * 109.47385 * 59.99834 * 23 21 19 25 25 H 1.48503 * 109.46846 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47026 * 299.99660 * 23 21 19 27 27 C 1.46928 * 118.73291 * 306.39604 * 18 17 16 28 28 C 1.53037 * 109.46257 * 300.00505 * 15 4 3 29 29 H 4.40638 * 5.51260 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.46904 * 149.38192 * 3 2 1 31 31 H 1.08997 * 109.46932 * 29.37382 * 3 2 1 32 32 H 1.08006 * 126.82851 * 359.97438 * 8 7 5 33 33 H 1.09002 * 109.46659 * 89.97567 * 10 9 8 34 34 H 1.08995 * 109.46860 * 209.97213 * 10 9 8 35 35 H 1.08996 * 109.46931 * 329.97594 * 10 9 8 36 36 H 1.08999 * 109.47341 * 90.02608 * 12 11 9 37 37 H 1.09001 * 109.47526 * 210.02488 * 12 11 9 38 38 H 1.09002 * 109.47577 * 330.02850 * 12 11 9 39 39 H 1.09007 * 109.47530 * 270.19361 * 14 13 11 40 40 H 1.09000 * 109.47101 * 30.19043 * 14 13 11 41 41 H 1.09002 * 109.47420 * 150.19184 * 14 13 11 42 42 H 1.09007 * 109.46241 * 180.02562 * 15 4 3 43 43 H 1.08999 * 109.49059 * 298.56460 * 16 15 4 44 44 H 1.08997 * 109.50025 * 58.65830 * 16 15 4 45 45 H 1.08998 * 109.58667 * 294.84291 * 17 16 15 46 46 H 1.09009 * 109.70317 * 174.49163 * 17 16 15 47 47 H 0.97000 * 119.99900 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.58741 * 293.81184 * 27 18 17 49 49 H 1.09006 * 109.70533 * 173.46600 * 27 18 17 50 50 H 1.09000 * 109.49771 * 301.33578 * 28 15 4 51 51 H 1.08998 * 109.49973 * 61.40210 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.0159 1.3812 5 6 3.4238 -1.1424 2.0064 6 8 3.7300 -1.1382 3.1835 7 6 3.3635 -2.4139 1.2659 8 6 2.3044 -2.8515 0.3502 9 6 2.6657 -4.0692 -0.0916 10 6 1.8822 -4.9191 -1.0586 11 7 3.8576 -4.4096 0.4787 12 6 4.5712 -5.6665 0.2402 13 6 4.2869 -3.4227 1.2882 14 6 5.5650 -3.4304 2.0865 15 6 3.3079 1.2902 2.0827 16 6 1.9635 2.0175 2.1590 17 6 2.1419 3.3331 2.9232 18 7 3.2128 4.1100 2.2841 19 6 2.9957 5.4024 1.8873 20 1 2.0035 5.7206 1.6032 21 6 4.0509 6.3036 1.8501 22 7 5.1740 6.0282 2.4788 23 14 3.8768 7.9073 0.9080 24 1 2.7524 8.6946 1.4744 25 1 5.1348 8.6881 1.0234 26 1 3.6049 7.6142 -0.5222 27 6 4.5212 3.4737 2.0791 28 6 4.3162 2.1565 1.3243 29 1 -1.0499 0.0002 -0.0001 30 1 3.0089 0.8852 -0.5234 31 1 3.0097 -0.8947 -0.5041 32 1 1.4117 -2.3048 0.0843 33 1 2.1931 -4.6900 -2.0779 34 1 2.0686 -5.9725 -0.8500 35 1 0.8184 -4.7092 -0.9473 36 1 5.2486 -5.5450 -0.6051 37 1 5.1433 -5.9339 1.1286 38 1 3.8529 -6.4561 0.0194 39 1 5.3781 -3.8674 3.0675 40 1 6.3168 -4.0210 1.5629 41 1 5.9246 -2.4084 2.2065 42 1 3.6766 1.1023 3.0912 43 1 1.6061 2.2279 1.1510 44 1 1.2394 1.3902 2.6788 45 1 2.4119 3.1211 3.9577 46 1 1.2125 3.9021 2.8974 47 1 5.9112 6.6581 2.4531 48 1 4.9852 3.2731 3.0448 49 1 5.1633 4.1333 1.4953 50 1 5.2666 1.6280 1.2501 51 1 3.9368 2.3651 0.3241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716811853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:29 Heat of formation + Delta-G solvation = 94.900985 kcal Electronic energy + Delta-G solvation = -30938.314352 eV Core-core repulsion = 27034.038839 eV Total energy + Delta-G solvation = -3904.275513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.62271 -39.54829 -37.22294 -35.50971 -33.31255 -32.90562 -32.66974 -31.98249 -30.08721 -29.55787 -29.34638 -27.03179 -26.90434 -25.22966 -24.50628 -22.45385 -22.09246 -21.09697 -19.90778 -19.16375 -18.48544 -17.64838 -16.93037 -16.64780 -16.20455 -15.81513 -15.59887 -14.92681 -14.68218 -14.34876 -13.86730 -13.72954 -13.56862 -13.51564 -13.40766 -13.28520 -13.09821 -12.97632 -12.90101 -12.64708 -12.54058 -12.44666 -12.26748 -12.22502 -11.85364 -11.60317 -11.42701 -11.07683 -10.89494 -10.67646 -10.43277 -10.30840 -10.06288 -10.03852 -9.90853 -9.71897 -9.59954 -9.37648 -8.60588 -8.49752 -8.28301 -8.04796 -6.60788 -5.73416 -3.16408 1.84716 2.31544 2.57442 2.76587 2.97005 3.31748 3.41813 3.47215 3.48502 3.71471 4.41500 4.48865 4.53840 4.54073 4.68094 4.74273 4.89482 5.01916 5.05557 5.09843 5.25938 5.38507 5.41463 5.45421 5.52092 5.54733 5.57717 5.62075 5.63792 5.75657 5.81565 5.85118 6.00704 6.05595 6.10524 6.19202 6.35183 6.45435 6.62408 6.68970 6.72934 6.73469 6.87143 6.95908 7.06802 7.08749 7.12303 7.41536 7.67652 7.72582 7.78587 7.84605 8.50896 8.54038 9.26969 9.90067 10.47826 11.35262 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.002763 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.732911 B =10130.143095 C =10781.970498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.187 4.187 3 C 0.212 3.788 4 N -0.596 5.596 5 C 0.593 3.407 6 O -0.543 6.543 7 C -0.222 4.222 8 C -0.165 4.165 9 C 0.006 3.994 10 C -0.081 4.081 11 N -0.443 5.443 12 C 0.068 3.932 13 C 0.088 3.912 14 C -0.087 4.087 15 C 0.147 3.853 16 C -0.135 4.135 17 C 0.148 3.852 18 N -0.592 5.592 19 C -0.251 4.251 20 H 0.064 0.936 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.175 3.825 28 C -0.146 4.146 29 H 0.214 0.786 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.148 0.852 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.061 0.939 44 H 0.050 0.950 45 H 0.019 0.981 46 H 0.055 0.945 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.090 0.910 50 H 0.052 0.948 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.104 -25.210 -8.764 26.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.189 4.189 3 C 0.090 3.910 4 N -0.326 5.326 5 C 0.382 3.618 6 O -0.421 6.421 7 C -0.232 4.232 8 C -0.189 4.189 9 C -0.101 4.101 10 C -0.139 4.139 11 N -0.120 5.120 12 C -0.074 4.074 13 C -0.027 4.027 14 C -0.144 4.144 15 C 0.045 3.955 16 C -0.175 4.175 17 C 0.021 3.979 18 N -0.315 5.315 19 C -0.380 4.380 20 H 0.082 0.918 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.049 3.951 28 C -0.186 4.186 29 H 0.231 0.769 30 H 0.119 0.881 31 H 0.124 0.876 32 H 0.165 0.835 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.037 0.963 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.108 0.892 50 H 0.070 0.930 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.594 -25.390 -8.172 26.799 hybrid contribution -0.391 0.811 -0.580 1.071 sum -2.985 -24.580 -8.752 26.262 Atomic orbital electron populations 1.24824 0.95799 1.01859 0.99415 1.23562 0.94895 0.99524 1.00880 1.18508 0.83647 1.04446 0.84449 1.48060 1.64494 1.06635 1.13447 1.17490 0.75925 0.82573 0.85782 1.90757 1.49067 1.86944 1.15333 1.20122 0.99237 0.96545 1.07257 1.21978 1.00627 0.95593 1.00703 1.20175 0.89098 0.97595 1.03264 1.20301 0.99346 0.97588 0.96631 1.43354 1.17870 1.14897 1.35899 1.22038 0.97743 0.84506 1.03130 1.20111 0.97866 0.88164 0.96546 1.20400 0.91155 1.04386 0.98461 1.21204 0.96534 0.80684 0.97078 1.22353 0.95677 0.97946 1.01499 1.20876 0.92835 0.90415 0.93767 1.44062 1.08585 1.10560 1.68246 1.19137 0.95265 0.85886 1.37756 0.91801 1.25065 0.97535 0.97570 0.99480 1.70016 1.05072 1.36662 1.43059 0.86369 0.76830 0.83444 0.80105 1.20930 1.21672 1.21076 1.20742 0.88067 0.89380 0.96936 1.22585 0.97115 0.98750 1.00173 0.76914 0.88125 0.87565 0.83462 0.91081 0.91987 0.90178 0.90816 0.89728 0.89742 0.90285 0.91816 0.89552 0.88606 0.91984 0.93145 0.96313 0.92643 0.93597 0.96186 0.89153 0.92967 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.48 19.14 29.55 0.57 -1.91 16 2 C -0.19 -2.58 9.60 -37.12 -0.36 -2.94 16 3 C 0.21 2.96 5.04 -6.83 -0.03 2.93 16 4 N -0.60 -9.92 2.39 -170.69 -0.41 -10.33 16 5 C 0.59 10.37 7.20 -12.59 -0.09 10.28 16 6 O -0.54 -11.22 16.17 5.26 0.08 -11.13 16 7 C -0.22 -3.23 5.23 -103.35 -0.54 -3.77 16 8 C -0.16 -2.05 8.64 -37.50 -0.32 -2.38 16 9 C 0.01 0.06 6.85 -81.87 -0.56 -0.50 16 10 C -0.08 -0.52 10.06 36.01 0.36 -0.16 16 11 N -0.44 -4.32 3.09 -115.28 -0.36 -4.68 16 12 C 0.07 0.36 10.39 59.85 0.62 0.98 16 13 C 0.09 1.09 6.89 -81.88 -0.56 0.52 16 14 C -0.09 -0.90 9.38 36.00 0.34 -0.57 16 15 C 0.15 2.79 2.48 -67.89 -0.17 2.63 16 16 C -0.13 -2.59 4.66 -26.61 -0.12 -2.71 16 17 C 0.15 3.29 6.52 -3.72 -0.02 3.27 16 18 N -0.59 -15.17 2.99 -172.32 -0.52 -15.69 16 19 C -0.25 -6.97 9.58 -15.06 -0.14 -7.11 16 20 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 21 C 0.00 0.05 4.94 -17.43 -0.09 -0.03 16 22 N -0.90 -26.51 11.16 55.49 0.62 -25.89 16 23 Si 0.90 21.88 29.58 -169.99 -5.03 16.85 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.18 4.27 5.29 -3.71 -0.02 4.25 16 28 C -0.15 -2.90 5.30 -26.61 -0.14 -3.04 16 29 H 0.21 1.91 7.80 -54.09 -0.42 1.49 16 30 H 0.10 1.40 6.47 -51.93 -0.34 1.06 16 31 H 0.11 1.33 5.47 -51.93 -0.28 1.05 16 32 H 0.15 1.80 5.64 -52.48 -0.30 1.51 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.30 6.94 -51.93 -0.36 -0.06 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.37 7.51 -51.93 -0.39 -0.02 16 38 H 0.08 0.31 6.90 -51.93 -0.36 -0.05 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.48 7.59 -51.93 -0.39 0.08 16 41 H 0.09 1.05 7.92 -51.93 -0.41 0.64 16 42 H 0.10 2.05 6.91 -51.93 -0.36 1.69 16 43 H 0.06 1.20 6.85 -51.93 -0.36 0.85 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 1.20 7.93 -51.92 -0.41 0.79 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 50 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.06 1.11 6.74 -51.93 -0.35 0.76 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -34.16 401.96 -8.81 -42.97 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.97 Total: 2.09 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.29 Total: -0.26 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.66 Total: -56.58 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.03 Total: 16.85 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.16 -8.81 -42.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716811853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.871 kcal (2) G-P(sol) polarization free energy of solvation -34.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds