Wall clock time and date at job start Wed Apr 1 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46501 * 109.46744 * 269.37718 * 3 2 1 5 5 C 1.34776 * 120.00191 * 93.35512 * 4 3 2 6 6 O 1.21625 * 120.00463 * 185.66467 * 5 4 3 7 7 C 1.47266 * 119.99620 * 5.38616 * 5 4 3 8 8 C 1.46684 * 126.94749 * 314.92977 * 7 5 4 9 9 C 1.34482 * 106.33537 * 180.02562 * 8 7 5 10 10 C 1.50704 * 125.57174 * 179.97438 * 9 8 7 11 11 N 1.36444 * 108.85782 * 359.97438 * 9 8 7 12 12 C 1.46497 * 124.85338 * 179.97438 * 11 9 8 13 13 C 1.34669 * 110.29854 * 359.72750 * 11 9 8 14 14 C 1.50689 * 125.80484 * 180.28076 * 13 11 9 15 15 C 1.46495 * 120.00060 * 273.35012 * 4 3 2 16 16 C 1.53049 * 109.46030 * 60.07322 * 15 4 3 17 17 C 1.53187 * 109.31195 * 178.61664 * 16 15 4 18 18 N 1.46922 * 108.78326 * 54.63358 * 17 16 15 19 19 C 1.36932 * 120.63480 * 126.40786 * 18 17 16 20 20 H 1.07995 * 120.00010 * 331.38740 * 19 18 17 21 21 C 1.38816 * 120.00105 * 151.38510 * 19 18 17 22 22 N 1.31628 * 119.99795 * 344.06925 * 21 19 18 23 23 Si 1.86799 * 120.00194 * 164.07309 * 21 19 18 24 24 H 1.48494 * 109.47385 * 59.99834 * 23 21 19 25 25 H 1.48503 * 109.46846 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47026 * 299.99660 * 23 21 19 27 27 C 1.46928 * 118.73291 * 306.39604 * 18 17 16 28 28 C 1.53037 * 109.46257 * 300.00505 * 15 4 3 29 29 H 4.40638 * 5.51260 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.46904 * 149.38192 * 3 2 1 31 31 H 1.08997 * 109.46932 * 29.37382 * 3 2 1 32 32 H 1.08006 * 126.82851 * 359.97438 * 8 7 5 33 33 H 1.09002 * 109.46659 * 89.97567 * 10 9 8 34 34 H 1.08995 * 109.46860 * 209.97213 * 10 9 8 35 35 H 1.08996 * 109.46931 * 329.97594 * 10 9 8 36 36 H 1.08999 * 109.47341 * 90.02608 * 12 11 9 37 37 H 1.09001 * 109.47526 * 210.02488 * 12 11 9 38 38 H 1.09002 * 109.47577 * 330.02850 * 12 11 9 39 39 H 1.09007 * 109.47530 * 270.19361 * 14 13 11 40 40 H 1.09000 * 109.47101 * 30.19043 * 14 13 11 41 41 H 1.09002 * 109.47420 * 150.19184 * 14 13 11 42 42 H 1.09007 * 109.46241 * 180.02562 * 15 4 3 43 43 H 1.08999 * 109.49059 * 298.56460 * 16 15 4 44 44 H 1.08997 * 109.50025 * 58.65830 * 16 15 4 45 45 H 1.08998 * 109.58667 * 294.84291 * 17 16 15 46 46 H 1.09009 * 109.70317 * 174.49163 * 17 16 15 47 47 H 0.97000 * 119.99900 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.58741 * 293.81184 * 27 18 17 49 49 H 1.09006 * 109.70533 * 173.46600 * 27 18 17 50 50 H 1.09000 * 109.49771 * 301.33578 * 28 15 4 51 51 H 1.08998 * 109.49973 * 61.40210 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1343 0.0159 1.3812 5 6 3.4238 -1.1424 2.0064 6 8 3.7300 -1.1382 3.1835 7 6 3.3635 -2.4139 1.2659 8 6 2.3044 -2.8515 0.3502 9 6 2.6657 -4.0692 -0.0916 10 6 1.8822 -4.9191 -1.0586 11 7 3.8576 -4.4096 0.4787 12 6 4.5712 -5.6665 0.2402 13 6 4.2869 -3.4227 1.2882 14 6 5.5650 -3.4304 2.0865 15 6 3.3079 1.2902 2.0827 16 6 1.9635 2.0175 2.1590 17 6 2.1419 3.3331 2.9232 18 7 3.2128 4.1100 2.2841 19 6 2.9957 5.4024 1.8873 20 1 2.0035 5.7206 1.6032 21 6 4.0509 6.3036 1.8501 22 7 5.1740 6.0282 2.4788 23 14 3.8768 7.9073 0.9080 24 1 2.7524 8.6946 1.4744 25 1 5.1348 8.6881 1.0234 26 1 3.6049 7.6142 -0.5222 27 6 4.5212 3.4737 2.0791 28 6 4.3162 2.1565 1.3243 29 1 -1.0499 0.0002 -0.0001 30 1 3.0089 0.8852 -0.5234 31 1 3.0097 -0.8947 -0.5041 32 1 1.4117 -2.3048 0.0843 33 1 2.1931 -4.6900 -2.0779 34 1 2.0686 -5.9725 -0.8500 35 1 0.8184 -4.7092 -0.9473 36 1 5.2486 -5.5450 -0.6051 37 1 5.1433 -5.9339 1.1286 38 1 3.8529 -6.4561 0.0194 39 1 5.3781 -3.8674 3.0675 40 1 6.3168 -4.0210 1.5629 41 1 5.9246 -2.4084 2.2065 42 1 3.6766 1.1023 3.0912 43 1 1.6061 2.2279 1.1510 44 1 1.2394 1.3902 2.6788 45 1 2.4119 3.1211 3.9577 46 1 1.2125 3.9021 2.8974 47 1 5.9112 6.6581 2.4531 48 1 4.9852 3.2731 3.0448 49 1 5.1633 4.1333 1.4953 50 1 5.2666 1.6280 1.2501 51 1 3.9368 2.3651 0.3241 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716811853.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:28 Heat of formation + Delta-G solvation = 76.125654 kcal Electronic energy + Delta-G solvation = -30939.128511 eV Core-core repulsion = 27034.038839 eV Total energy + Delta-G solvation = -3905.089672 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.48882 -40.90968 -38.89490 -36.99266 -34.77353 -33.69335 -33.57924 -33.47475 -31.82609 -31.38056 -30.03785 -28.17931 -27.91699 -26.69636 -25.62384 -23.97162 -23.86563 -22.34860 -20.94977 -20.78208 -19.59808 -18.79842 -18.53952 -18.00835 -17.30056 -16.97588 -16.61448 -16.46843 -16.03011 -15.64009 -15.39646 -15.20682 -14.90129 -14.70027 -14.55070 -14.32617 -14.21920 -14.06619 -14.00426 -13.84903 -13.74574 -13.38185 -13.25246 -13.11153 -13.00292 -12.94507 -12.68814 -12.56953 -12.50916 -12.40225 -12.17112 -12.05876 -11.93968 -11.54287 -11.38231 -11.31262 -11.08302 -10.80012 -10.55934 -9.79645 -9.44695 -8.92243 -8.70612 -7.86918 -5.34198 0.84209 1.43341 1.48493 1.50645 1.56878 1.58071 1.91812 1.97788 2.14047 2.52181 2.53189 3.28817 3.56564 3.62767 3.70524 3.81491 3.90576 3.95931 4.06494 4.17819 4.24678 4.26053 4.34094 4.41878 4.44350 4.50650 4.57437 4.61891 4.63012 4.71516 4.73462 4.78897 4.83656 4.85015 4.96826 5.00889 5.01435 5.02824 5.10575 5.15398 5.16556 5.25467 5.28613 5.44662 5.59554 5.63485 5.69206 5.83775 6.14613 6.37981 6.39050 6.46363 6.74521 7.13932 7.20751 7.82979 8.37435 9.20212 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018816 B = 0.002763 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.732911 B =10130.143095 C =10781.970498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.225 4.225 3 C 0.216 3.784 4 N -0.594 5.594 5 C 0.590 3.410 6 O -0.588 6.588 7 C -0.258 4.258 8 C -0.187 4.187 9 C 0.019 3.981 10 C -0.079 4.079 11 N -0.436 5.436 12 C 0.057 3.943 13 C 0.084 3.916 14 C -0.084 4.084 15 C 0.156 3.844 16 C -0.114 4.114 17 C 0.146 3.854 18 N -0.607 5.607 19 C -0.264 4.264 20 H 0.068 0.932 21 C -0.050 4.050 22 N -0.937 5.937 23 Si 0.971 3.029 24 H -0.276 1.276 25 H -0.294 1.294 26 H -0.275 1.275 27 C 0.184 3.816 28 C -0.128 4.128 29 H 0.245 0.755 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.146 0.854 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.061 0.939 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.007 0.993 46 H 0.061 0.939 47 H 0.251 0.749 48 H -0.009 1.009 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 -27.677 -11.350 30.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.226 4.226 3 C 0.094 3.906 4 N -0.323 5.323 5 C 0.381 3.619 6 O -0.469 6.469 7 C -0.268 4.268 8 C -0.210 4.210 9 C -0.090 4.090 10 C -0.137 4.137 11 N -0.112 5.112 12 C -0.083 4.083 13 C -0.033 4.033 14 C -0.141 4.141 15 C 0.053 3.947 16 C -0.154 4.154 17 C 0.020 3.980 18 N -0.330 5.330 19 C -0.394 4.394 20 H 0.086 0.914 21 C -0.245 4.245 22 N -0.583 5.583 23 Si 0.799 3.201 24 H -0.202 1.202 25 H -0.220 1.220 26 H -0.201 1.201 27 C 0.058 3.942 28 C -0.168 4.168 29 H 0.261 0.739 30 H 0.117 0.883 31 H 0.138 0.862 32 H 0.163 0.837 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.025 0.975 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.009 0.991 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.976 -27.901 -10.800 30.181 hybrid contribution -0.005 1.472 0.250 1.493 sum -3.981 -26.428 -10.550 28.733 Atomic orbital electron populations 1.25612 0.96582 1.00151 0.97407 1.23613 0.95204 1.01148 1.02657 1.18571 0.84341 1.05064 0.82615 1.47972 1.64485 1.05425 1.14413 1.18021 0.74748 0.83655 0.85455 1.90717 1.51205 1.87665 1.17351 1.20024 1.01577 0.96027 1.09174 1.21987 1.00576 0.96970 1.01481 1.20718 0.88881 0.97019 1.02389 1.20431 0.98995 0.98071 0.96156 1.43644 1.17739 1.15459 1.34408 1.22427 0.98538 0.82906 1.04427 1.20288 0.97912 0.88349 0.96768 1.20385 0.91451 1.03473 0.98783 1.20819 0.96037 0.81918 0.95897 1.22102 0.95848 0.96236 1.01194 1.20973 0.92073 0.91588 0.93400 1.44297 1.09367 1.10598 1.68780 1.19485 0.95560 0.86835 1.37528 0.91391 1.25870 0.97247 1.00995 1.00424 1.70188 1.05775 1.37797 1.44495 0.85291 0.76587 0.79293 0.78954 1.20153 1.22041 1.20109 1.20506 0.87349 0.90852 0.95540 1.22314 0.98115 0.96540 0.99795 0.73876 0.88264 0.86156 0.83689 0.89682 0.89823 0.89675 0.89119 0.88642 0.87470 0.90344 0.88496 0.92019 0.91442 0.91449 0.92325 0.97513 0.92036 0.94011 0.99051 0.91827 0.91914 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.02 19.14 74.32 1.42 -2.60 16 2 C -0.23 -5.93 9.60 31.13 0.30 -5.63 16 3 C 0.22 5.94 5.04 84.57 0.43 6.37 16 4 N -0.59 -20.18 2.39 -812.19 -1.94 -22.12 16 5 C 0.59 21.37 7.20 86.62 0.62 22.00 16 6 O -0.59 -25.69 16.17 -4.11 -0.07 -25.76 16 7 C -0.26 -7.53 5.23 -19.04 -0.10 -7.63 16 8 C -0.19 -4.43 8.64 23.62 0.20 -4.23 16 9 C 0.02 0.33 6.85 40.98 0.28 0.61 16 10 C -0.08 -0.71 10.06 71.24 0.72 0.00 16 11 N -0.44 -7.37 3.09 -518.63 -1.60 -8.97 16 12 C 0.06 0.39 10.39 127.77 1.33 1.71 16 13 C 0.08 1.99 6.89 41.78 0.29 2.28 16 14 C -0.08 -1.71 9.38 71.23 0.67 -1.04 16 15 C 0.16 6.16 2.48 45.02 0.11 6.27 16 16 C -0.11 -4.42 4.66 30.67 0.14 -4.28 16 17 C 0.15 6.63 6.52 86.36 0.56 7.19 16 18 N -0.61 -32.01 2.99 -699.10 -2.09 -34.10 16 19 C -0.26 -14.88 9.58 84.04 0.81 -14.08 16 20 H 0.07 3.71 7.88 -2.91 -0.02 3.68 16 21 C -0.05 -2.85 4.94 84.86 0.42 -2.43 16 22 N -0.94 -56.69 11.16 21.65 0.24 -56.45 16 23 Si 0.97 45.39 29.58 68.60 2.03 47.42 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 27 C 0.18 9.40 5.29 86.36 0.46 9.86 16 28 C -0.13 -5.22 5.30 30.67 0.16 -5.06 16 29 H 0.24 3.53 7.80 -4.42 -0.03 3.50 16 30 H 0.10 2.71 6.47 -2.39 -0.02 2.69 16 31 H 0.12 2.95 5.47 -2.39 -0.01 2.94 16 32 H 0.15 3.40 5.64 -2.91 -0.02 3.38 16 33 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.08 0.42 6.94 -2.39 -0.02 0.40 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.09 0.48 7.51 -2.39 -0.02 0.46 16 38 H 0.11 0.28 6.90 -2.39 -0.02 0.27 16 39 H 0.08 1.59 8.14 -2.38 -0.02 1.58 16 40 H 0.10 1.26 7.59 -2.39 -0.02 1.24 16 41 H 0.06 1.57 7.92 -2.39 -0.02 1.55 16 42 H 0.07 3.07 6.91 -2.38 -0.02 3.05 16 43 H 0.07 2.56 6.85 -2.39 -0.02 2.55 16 44 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 46 H 0.06 2.68 7.93 -2.38 -0.02 2.66 16 47 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 48 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 49 H 0.06 3.58 6.07 -2.38 -0.01 3.57 16 50 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.07 2.61 6.74 -2.39 -0.02 2.59 16 Total: -1.00 -77.51 401.96 6.31 -71.20 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.92 Total: 19.46 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 8.82 Total: 9.33 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -5.39 Total: -121.65 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.07 Total: -25.76 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -77.51 6.31 -71.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716811853.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.323 kcal (2) G-P(sol) polarization free energy of solvation -77.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds