Wall clock time and date at job start Wed Apr 1 2020 02:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.49411 * 2 1 4 4 N 1.46499 * 109.47109 * 299.99854 * 3 2 1 5 5 C 1.34782 * 119.99843 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99983 * 355.20685 * 5 4 3 7 7 C 1.50701 * 119.99807 * 175.20774 * 5 4 3 8 8 C 1.50698 * 115.54974 * 304.34647 * 7 5 4 9 9 C 1.38224 * 119.61831 * 314.15860 * 8 7 5 10 10 C 1.38624 * 119.16431 * 179.97438 * 9 8 7 11 11 C 1.38674 * 118.41964 * 359.97438 * 10 9 8 12 12 C 1.38180 * 119.16231 * 359.97438 * 11 10 9 13 13 N 1.31853 * 119.62117 * 133.88419 * 8 7 5 14 14 C 1.52995 * 117.49825 * 158.67295 * 7 5 4 15 15 C 1.52999 * 117.49560 * 90.01300 * 7 5 4 16 16 C 1.53042 * 109.49580 * 120.06025 * 2 1 3 17 17 C 1.53104 * 109.50152 * 58.62657 * 16 2 1 18 18 C 1.53197 * 109.33219 * 61.33928 * 17 16 2 19 19 N 1.46925 * 108.77562 * 305.36650 * 18 17 16 20 20 C 1.36938 * 120.62787 * 233.63217 * 19 18 17 21 21 H 1.07998 * 120.00369 * 31.53451 * 20 19 18 22 22 C 1.38809 * 119.99754 * 211.53797 * 20 19 18 23 23 N 1.31623 * 120.00069 * 10.47801 * 22 20 19 24 24 Si 1.86800 * 119.99900 * 190.48318 * 22 20 19 25 25 H 1.48499 * 109.47361 * 89.99672 * 24 22 20 26 26 H 1.48502 * 109.46897 * 209.99373 * 24 22 20 27 27 H 1.48496 * 109.47415 * 329.99552 * 24 22 20 28 28 C 1.46924 * 118.74068 * 53.60377 * 19 18 17 29 29 H 1.08994 * 109.47195 * 60.00703 * 1 2 3 30 30 H 1.08997 * 109.47454 * 299.99888 * 1 2 3 31 31 H 1.09004 * 109.46769 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47014 * 59.99997 * 3 2 1 33 33 H 1.08998 * 109.47316 * 179.97438 * 3 2 1 34 34 H 0.97003 * 119.99784 * 0.02562 * 4 3 2 35 35 H 1.08009 * 120.42017 * 359.95422 * 9 8 7 36 36 H 1.08001 * 120.79112 * 180.02562 * 10 9 8 37 37 H 1.08001 * 120.42107 * 180.02562 * 11 10 9 38 38 H 1.07999 * 119.61656 * 179.97438 * 12 11 10 39 39 H 1.09001 * 117.50107 * 0.02562 * 14 7 5 40 40 H 1.08998 * 117.49592 * 145.01808 * 14 7 5 41 41 H 1.09004 * 117.49801 * 214.97840 * 15 7 5 42 42 H 1.08995 * 117.50374 * 359.97438 * 15 7 5 43 43 H 1.09003 * 109.45756 * 178.61187 * 16 2 1 44 44 H 1.08996 * 109.46627 * 298.57032 * 16 2 1 45 45 H 1.09001 * 109.49093 * 301.37887 * 17 16 2 46 46 H 1.08998 * 109.49057 * 181.29506 * 17 16 2 47 47 H 1.09000 * 109.58386 * 185.57362 * 18 17 16 48 48 H 1.09002 * 109.58357 * 65.15153 * 18 17 16 49 49 H 0.97007 * 119.99950 * 180.02562 * 23 22 20 50 50 H 1.08993 * 109.58915 * 186.60213 * 28 19 18 51 51 H 1.09000 * 109.58312 * 66.17972 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 7 1.5526 2.1331 -1.1962 5 6 1.8783 3.4235 -1.4092 6 8 2.5017 4.0380 -0.5699 7 6 1.4677 4.1027 -2.6903 8 6 1.9185 3.4250 -3.9586 9 6 3.2231 2.9819 -4.0698 10 6 3.6276 2.3593 -5.2404 11 6 2.7004 2.2046 -6.2600 12 6 1.4132 2.6722 -6.0763 13 7 1.0626 3.2568 -4.9473 14 6 1.4036 5.6313 -2.6904 15 6 0.1115 4.8107 -2.7112 16 6 2.0408 -0.7227 1.2486 17 6 1.5031 -2.1561 1.2654 18 6 2.0142 -2.9040 0.0300 19 7 1.6517 -2.1378 -1.1701 20 6 0.9633 -2.7306 -2.1948 21 1 0.2603 -3.5233 -1.9856 22 6 1.1692 -2.3127 -3.5024 23 7 2.1650 -1.4994 -3.7843 24 14 0.0330 -2.9045 -4.8619 25 1 -1.1048 -1.9606 -5.0021 26 1 0.7838 -2.9683 -6.1416 27 1 -0.4831 -4.2550 -4.5229 28 6 2.0413 -0.7234 -1.2497 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6774 1.9563 0.8900 33 1 3.1306 1.4419 0.0005 34 1 0.9944 1.6620 -1.8345 35 1 3.9186 3.1192 -3.2550 36 1 4.6404 2.0026 -5.3554 37 1 2.9806 1.7239 -7.1857 38 1 0.6854 2.5559 -6.8657 39 1 1.6588 6.1458 -1.7639 40 1 1.6872 6.1468 -3.6079 41 1 -0.4544 4.7867 -3.6425 42 1 -0.4839 4.7849 -1.7986 43 1 3.1305 -0.7439 1.2356 44 1 1.6987 -0.1952 2.1390 45 1 0.4133 -2.1359 1.2535 46 1 1.8481 -2.6634 2.1664 47 1 1.5556 -3.8918 -0.0147 48 1 3.0981 -3.0042 0.0860 49 1 2.3086 -1.2070 -4.6980 50 1 1.6008 -0.2725 -2.1389 51 1 3.1275 -0.6458 -1.2981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716894235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:12 Heat of formation + Delta-G solvation = 40.450371 kcal Electronic energy + Delta-G solvation = -32005.631737 eV Core-core repulsion = 28098.995068 eV Total energy + Delta-G solvation = -3906.636669 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.61322 -39.39493 -38.40279 -36.30966 -34.71883 -33.18295 -32.21405 -31.38998 -30.83101 -29.87774 -26.74274 -26.08227 -25.32542 -24.36961 -23.41901 -22.50142 -22.19271 -21.87127 -20.46882 -19.56570 -18.08289 -17.50572 -16.68973 -16.19727 -16.00861 -15.69519 -15.25992 -15.11141 -14.71445 -14.39137 -13.97300 -13.91047 -13.84028 -13.59323 -13.34783 -13.15170 -13.04266 -12.71424 -12.62000 -12.27279 -12.18248 -11.73772 -11.62175 -11.47041 -11.30741 -10.93593 -10.89619 -10.76966 -10.65565 -10.60627 -10.42383 -10.19243 -10.08896 -9.84012 -9.73058 -9.64295 -9.50894 -9.38487 -9.30421 -8.75159 -8.65251 -8.50401 -6.62121 -5.81132 -3.28762 1.23974 1.48306 2.70907 3.32710 3.38781 3.39666 3.40732 3.68442 4.11958 4.24392 4.44698 4.66489 4.86479 4.95591 5.03032 5.13006 5.16225 5.29413 5.30339 5.39577 5.45157 5.52205 5.53669 5.59016 5.66960 5.77163 5.77964 5.89292 5.91771 5.98103 6.05677 6.10348 6.17026 6.18548 6.25434 6.29077 6.38928 6.41696 6.44032 6.54288 6.63422 6.76968 6.83506 6.84544 6.89309 6.97145 7.04700 7.30272 7.60499 7.75760 7.83580 8.11809 8.43984 8.47004 9.19574 9.80927 10.40012 11.25687 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008925 B = 0.005438 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.537171 B = 5147.783921 C = 7289.275997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.136 3.864 4 N -0.707 5.707 5 C 0.555 3.445 6 O -0.546 6.546 7 C -0.119 4.119 8 C 0.165 3.835 9 C -0.148 4.148 10 C -0.060 4.060 11 C -0.167 4.167 12 C 0.102 3.898 13 N -0.477 5.477 14 C -0.131 4.131 15 C -0.136 4.136 16 C -0.095 4.095 17 C -0.135 4.135 18 C 0.144 3.856 19 N -0.588 5.588 20 C -0.251 4.251 21 H 0.062 0.938 22 C 0.008 3.992 23 N -0.898 5.898 24 Si 0.897 3.103 25 H -0.287 1.287 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.189 3.811 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.408 0.592 35 H 0.129 0.871 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.153 0.847 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.116 0.884 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.049 0.951 47 H 0.052 0.948 48 H 0.016 0.984 49 H 0.252 0.748 50 H 0.089 0.911 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.494 9.907 0.521 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.106 4.106 3 C 0.012 3.988 4 N -0.357 5.357 5 C 0.340 3.660 6 O -0.424 6.424 7 C -0.124 4.124 8 C 0.027 3.973 9 C -0.168 4.168 10 C -0.086 4.086 11 C -0.187 4.187 12 C -0.055 4.055 13 N -0.186 5.186 14 C -0.169 4.169 15 C -0.173 4.173 16 C -0.133 4.133 17 C -0.174 4.174 18 C 0.017 3.983 19 N -0.310 5.310 20 C -0.380 4.380 21 H 0.080 0.920 22 C -0.191 4.191 23 N -0.542 5.542 24 Si 0.727 3.273 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.063 3.937 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.244 0.756 35 H 0.147 0.853 36 H 0.152 0.848 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.128 0.872 40 H 0.118 0.882 41 H 0.134 0.866 42 H 0.117 0.883 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.034 0.966 49 H 0.062 0.938 50 H 0.107 0.893 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -0.835 10.627 1.037 10.710 hybrid contribution 0.215 -1.108 -1.266 1.697 sum -0.620 9.518 -0.229 9.541 Atomic orbital electron populations 1.21713 0.94555 1.02558 0.99433 1.21562 0.96474 0.92688 0.99874 1.21404 0.98690 0.92137 0.86557 1.46007 1.52601 1.11308 1.25830 1.19131 0.79002 0.81865 0.86045 1.90661 1.41010 1.64899 1.45879 1.19965 1.05691 0.95602 0.91095 1.19677 0.89770 0.95618 0.92253 1.21777 0.96828 0.99453 0.98765 1.21501 1.00135 0.94476 0.92464 1.22093 0.94986 1.01114 1.00483 1.22607 0.94776 0.93855 0.94299 1.67252 1.36380 1.14461 1.00532 1.23016 1.00417 0.89336 1.04129 1.23029 0.89425 1.00305 1.04546 1.21352 0.99884 0.96006 0.96030 1.22063 1.00960 0.95715 0.98703 1.20932 0.96305 0.94224 0.86793 1.43927 1.65229 1.05531 1.16332 1.19133 1.15873 1.17816 0.85221 0.91993 1.25110 0.96888 0.99946 0.97173 1.69972 1.28949 1.36860 1.18462 0.86366 0.80311 0.78690 0.81892 1.21422 1.21758 1.20489 1.20772 0.95991 0.83782 0.93203 0.93716 0.94552 0.91026 0.92224 0.91948 0.75560 0.85292 0.84831 0.84949 0.82924 0.87227 0.88153 0.86571 0.88262 0.92628 0.93423 0.91999 0.93260 0.92990 0.96635 0.93812 0.89307 0.96660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 7.81 37.16 0.29 -1.90 16 2 C -0.10 -1.85 0.53 -154.39 -0.08 -1.93 16 3 C 0.14 2.31 4.57 -4.04 -0.02 2.29 16 4 N -0.71 -12.05 4.95 -60.29 -0.30 -12.35 16 5 C 0.56 9.40 6.54 -10.98 -0.07 9.33 16 6 O -0.55 -10.45 16.48 5.56 0.09 -10.35 16 7 C -0.12 -1.77 2.28 -156.82 -0.36 -2.13 16 8 C 0.16 2.58 6.18 -82.59 -0.51 2.07 16 9 C -0.15 -2.30 9.40 -39.44 -0.37 -2.67 16 10 C -0.06 -0.85 10.18 -39.28 -0.40 -1.25 16 11 C -0.17 -2.26 10.11 -39.44 -0.40 -2.66 16 12 C 0.10 1.44 11.18 -17.55 -0.20 1.24 16 13 N -0.48 -7.46 9.36 -9.48 -0.09 -7.54 16 14 C -0.13 -1.63 9.75 -26.70 -0.26 -1.89 16 15 C -0.14 -1.71 9.73 -26.69 -0.26 -1.97 16 16 C -0.09 -1.55 4.72 -26.66 -0.13 -1.68 16 17 C -0.14 -2.27 5.74 -26.58 -0.15 -2.42 16 18 C 0.14 2.92 6.52 -3.71 -0.02 2.90 16 19 N -0.59 -13.91 2.42 -172.33 -0.42 -14.33 16 20 C -0.25 -6.55 9.58 -15.06 -0.14 -6.69 16 21 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 22 C 0.01 0.20 5.05 -17.43 -0.09 0.12 16 23 N -0.90 -24.37 11.05 55.49 0.61 -23.75 16 24 Si 0.90 21.05 29.57 -169.99 -5.03 16.03 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 28 C 0.19 4.19 3.67 -3.71 -0.01 4.18 16 29 H 0.04 0.80 6.86 -51.93 -0.36 0.44 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 1.37 5.97 -51.93 -0.31 1.06 16 32 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.41 7.37 6.22 -40.82 -0.25 7.11 16 35 H 0.13 1.98 7.84 -52.48 -0.41 1.57 16 36 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 37 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.11 1.35 7.83 -51.93 -0.41 0.95 16 40 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.12 1.44 7.59 -51.93 -0.39 1.04 16 42 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 1.06 6.33 -51.93 -0.33 0.73 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 50 H 0.09 2.19 5.01 -51.93 -0.26 1.93 16 51 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 402.05 15.07 6.06 6.06 Total: -1.00 -29.52 402.05 -10.43 -39.95 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -8.18 Total: 11.36 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -3.18 Total: -5.07 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.19 Total: -57.97 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.52 -10.43 -39.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716894235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.397 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds