Wall clock time and date at job start Wed Apr 1 2020 02:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.49411 * 2 1 4 4 N 1.46499 * 109.47109 * 299.99854 * 3 2 1 5 5 C 1.34782 * 119.99843 * 179.97438 * 4 3 2 6 6 O 1.21276 * 119.99983 * 355.20685 * 5 4 3 7 7 C 1.50701 * 119.99807 * 175.20774 * 5 4 3 8 8 C 1.50698 * 115.54974 * 304.34647 * 7 5 4 9 9 C 1.38224 * 119.61831 * 314.15860 * 8 7 5 10 10 C 1.38624 * 119.16431 * 179.97438 * 9 8 7 11 11 C 1.38674 * 118.41964 * 359.97438 * 10 9 8 12 12 C 1.38180 * 119.16231 * 359.97438 * 11 10 9 13 13 N 1.31853 * 119.62117 * 133.88419 * 8 7 5 14 14 C 1.52995 * 117.49825 * 158.67295 * 7 5 4 15 15 C 1.52999 * 117.49560 * 90.01300 * 7 5 4 16 16 C 1.53042 * 109.49580 * 120.06025 * 2 1 3 17 17 C 1.53104 * 109.50152 * 58.62657 * 16 2 1 18 18 C 1.53197 * 109.33219 * 61.33928 * 17 16 2 19 19 N 1.46925 * 108.77562 * 305.36650 * 18 17 16 20 20 C 1.36938 * 120.62787 * 233.63217 * 19 18 17 21 21 H 1.07998 * 120.00369 * 31.53451 * 20 19 18 22 22 C 1.38809 * 119.99754 * 211.53797 * 20 19 18 23 23 N 1.31623 * 120.00069 * 10.47801 * 22 20 19 24 24 Si 1.86800 * 119.99900 * 190.48318 * 22 20 19 25 25 H 1.48499 * 109.47361 * 89.99672 * 24 22 20 26 26 H 1.48502 * 109.46897 * 209.99373 * 24 22 20 27 27 H 1.48496 * 109.47415 * 329.99552 * 24 22 20 28 28 C 1.46924 * 118.74068 * 53.60377 * 19 18 17 29 29 H 1.08994 * 109.47195 * 60.00703 * 1 2 3 30 30 H 1.08997 * 109.47454 * 299.99888 * 1 2 3 31 31 H 1.09004 * 109.46769 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47014 * 59.99997 * 3 2 1 33 33 H 1.08998 * 109.47316 * 179.97438 * 3 2 1 34 34 H 0.97003 * 119.99784 * 0.02562 * 4 3 2 35 35 H 1.08009 * 120.42017 * 359.95422 * 9 8 7 36 36 H 1.08001 * 120.79112 * 180.02562 * 10 9 8 37 37 H 1.08001 * 120.42107 * 180.02562 * 11 10 9 38 38 H 1.07999 * 119.61656 * 179.97438 * 12 11 10 39 39 H 1.09001 * 117.50107 * 0.02562 * 14 7 5 40 40 H 1.08998 * 117.49592 * 145.01808 * 14 7 5 41 41 H 1.09004 * 117.49801 * 214.97840 * 15 7 5 42 42 H 1.08995 * 117.50374 * 359.97438 * 15 7 5 43 43 H 1.09003 * 109.45756 * 178.61187 * 16 2 1 44 44 H 1.08996 * 109.46627 * 298.57032 * 16 2 1 45 45 H 1.09001 * 109.49093 * 301.37887 * 17 16 2 46 46 H 1.08998 * 109.49057 * 181.29506 * 17 16 2 47 47 H 1.09000 * 109.58386 * 185.57362 * 18 17 16 48 48 H 1.09002 * 109.58357 * 65.15153 * 18 17 16 49 49 H 0.97007 * 119.99950 * 180.02562 * 23 22 20 50 50 H 1.08993 * 109.58915 * 186.60213 * 28 19 18 51 51 H 1.09000 * 109.58312 * 66.17972 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 7 1.5526 2.1331 -1.1962 5 6 1.8783 3.4235 -1.4092 6 8 2.5017 4.0380 -0.5699 7 6 1.4677 4.1027 -2.6903 8 6 1.9185 3.4250 -3.9586 9 6 3.2231 2.9819 -4.0698 10 6 3.6276 2.3593 -5.2404 11 6 2.7004 2.2046 -6.2600 12 6 1.4132 2.6722 -6.0763 13 7 1.0626 3.2568 -4.9473 14 6 1.4036 5.6313 -2.6904 15 6 0.1115 4.8107 -2.7112 16 6 2.0408 -0.7227 1.2486 17 6 1.5031 -2.1561 1.2654 18 6 2.0142 -2.9040 0.0300 19 7 1.6517 -2.1378 -1.1701 20 6 0.9633 -2.7306 -2.1948 21 1 0.2603 -3.5233 -1.9856 22 6 1.1692 -2.3127 -3.5024 23 7 2.1650 -1.4994 -3.7843 24 14 0.0330 -2.9045 -4.8619 25 1 -1.1048 -1.9606 -5.0021 26 1 0.7838 -2.9683 -6.1416 27 1 -0.4831 -4.2550 -4.5229 28 6 2.0413 -0.7234 -1.2497 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6774 1.9563 0.8900 33 1 3.1306 1.4419 0.0005 34 1 0.9944 1.6620 -1.8345 35 1 3.9186 3.1192 -3.2550 36 1 4.6404 2.0026 -5.3554 37 1 2.9806 1.7239 -7.1857 38 1 0.6854 2.5559 -6.8657 39 1 1.6588 6.1458 -1.7639 40 1 1.6872 6.1468 -3.6079 41 1 -0.4544 4.7867 -3.6425 42 1 -0.4839 4.7849 -1.7986 43 1 3.1305 -0.7439 1.2356 44 1 1.6987 -0.1952 2.1390 45 1 0.4133 -2.1359 1.2535 46 1 1.8481 -2.6634 2.1664 47 1 1.5556 -3.8918 -0.0147 48 1 3.0981 -3.0042 0.0860 49 1 2.3086 -1.2070 -4.6980 50 1 1.6008 -0.2725 -2.1389 51 1 3.1275 -0.6458 -1.2981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716894235.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:11 Heat of formation + Delta-G solvation = 25.319324 kcal Electronic energy + Delta-G solvation = -32006.287868 eV Core-core repulsion = 28098.995068 eV Total energy + Delta-G solvation = -3907.292800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.81204 -40.71012 -39.85472 -37.48327 -36.28274 -34.88124 -33.34236 -32.96483 -31.97711 -31.59257 -28.13647 -27.63881 -27.09778 -25.60835 -24.52933 -23.98746 -23.37589 -23.18466 -21.98335 -20.87295 -19.57603 -18.80306 -18.48759 -17.35296 -17.18427 -17.10382 -16.76988 -16.41080 -16.11725 -15.84274 -15.47029 -15.40021 -15.19808 -14.88482 -14.80249 -14.68725 -14.30590 -14.16472 -13.81462 -13.77503 -13.69151 -13.13225 -12.99867 -12.82755 -12.73645 -12.61606 -12.45600 -12.29153 -12.16939 -11.87417 -11.80591 -11.73871 -11.72324 -11.40289 -11.21854 -10.98785 -10.91626 -10.78395 -10.50577 -10.44251 -10.08174 -9.83352 -8.54193 -7.80280 -5.30756 0.11543 0.34802 1.40988 1.45001 1.47236 1.53647 2.11383 2.51556 2.58808 3.00096 3.14068 3.32784 3.56215 3.60144 3.69033 3.90177 3.95055 3.97131 4.02891 4.04246 4.05420 4.23808 4.28150 4.36046 4.46660 4.52790 4.54721 4.67690 4.69419 4.72791 4.73455 4.79887 4.85315 4.91615 4.99468 5.03351 5.10169 5.17026 5.18337 5.20312 5.27741 5.28491 5.32241 5.39727 5.46658 5.50827 5.64793 5.72913 5.74838 5.79962 6.44242 6.46358 6.98087 7.10644 7.21901 7.90731 8.44810 9.23192 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008925 B = 0.005438 C = 0.003840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.537171 B = 5147.783921 C = 7289.275997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C 0.141 3.859 4 N -0.707 5.707 5 C 0.557 3.443 6 O -0.571 6.571 7 C -0.141 4.141 8 C 0.157 3.843 9 C -0.168 4.168 10 C -0.070 4.070 11 C -0.169 4.169 12 C 0.091 3.909 13 N -0.491 5.491 14 C -0.116 4.116 15 C -0.122 4.122 16 C -0.094 4.094 17 C -0.124 4.124 18 C 0.137 3.863 19 N -0.603 5.603 20 C -0.260 4.260 21 H 0.059 0.941 22 C -0.036 4.036 23 N -0.919 5.919 24 Si 0.952 3.048 25 H -0.287 1.287 26 H -0.294 1.294 27 H -0.275 1.275 28 C 0.204 3.796 29 H 0.033 0.967 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.403 0.597 35 H 0.120 0.880 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.180 0.820 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.120 0.880 42 H 0.108 0.892 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.050 0.950 48 H 0.007 0.993 49 H 0.247 0.753 50 H 0.062 0.938 51 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 10.288 1.098 10.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C 0.017 3.983 4 N -0.356 5.356 5 C 0.343 3.657 6 O -0.451 6.451 7 C -0.145 4.145 8 C 0.019 3.981 9 C -0.188 4.188 10 C -0.096 4.096 11 C -0.189 4.189 12 C -0.066 4.066 13 N -0.200 5.200 14 C -0.154 4.154 15 C -0.159 4.159 16 C -0.132 4.132 17 C -0.163 4.163 18 C 0.012 3.988 19 N -0.326 5.326 20 C -0.390 4.390 21 H 0.077 0.923 22 C -0.233 4.233 23 N -0.564 5.564 24 Si 0.781 3.219 25 H -0.214 1.214 26 H -0.221 1.221 27 H -0.200 1.200 28 C 0.078 3.922 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.238 0.762 35 H 0.138 0.862 36 H 0.166 0.834 37 H 0.176 0.824 38 H 0.197 0.803 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.138 0.862 42 H 0.127 0.873 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.081 0.919 46 H 0.098 0.902 47 H 0.068 0.932 48 H 0.025 0.975 49 H 0.057 0.943 50 H 0.080 0.920 51 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -2.049 10.999 1.640 11.307 hybrid contribution 0.642 -1.297 -1.462 2.057 sum -1.407 9.702 0.179 9.805 Atomic orbital electron populations 1.21617 0.93771 1.01746 1.00277 1.21374 0.96878 0.92762 0.98466 1.21343 0.98009 0.91708 0.87192 1.46036 1.52443 1.11468 1.25698 1.19440 0.78222 0.81547 0.86460 1.90636 1.42098 1.65358 1.47006 1.19947 1.07932 0.96858 0.89744 1.19772 0.89786 0.95860 0.92666 1.21851 0.97071 1.00667 0.99226 1.21797 1.01230 0.94182 0.92375 1.22420 0.94634 1.00621 1.01196 1.23152 0.95718 0.93195 0.94494 1.67281 1.36480 1.15186 1.01054 1.23087 0.99784 0.87709 1.04802 1.23098 0.88861 0.98813 1.05149 1.21378 0.99726 0.95878 0.96186 1.21940 1.00900 0.95620 0.97795 1.21092 0.95891 0.94563 0.87260 1.44148 1.65202 1.06371 1.16889 1.19350 1.15891 1.17666 0.86124 0.92343 1.25698 0.98165 1.00520 0.98885 1.70121 1.30155 1.37793 1.18343 0.85504 0.78629 0.78323 0.79419 1.21386 1.22097 1.19977 1.20465 0.93528 0.83706 0.94482 0.94758 0.91783 0.92575 0.90639 0.93125 0.76153 0.86183 0.83394 0.82363 0.80333 0.87058 0.86895 0.86190 0.87346 0.92986 0.90299 0.91860 0.90193 0.93151 0.97512 0.94326 0.91956 1.00263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 7.81 71.98 0.56 -3.35 16 2 C -0.09 -3.24 0.53 -52.10 -0.03 -3.27 16 3 C 0.14 4.73 4.57 86.38 0.40 5.12 16 4 N -0.71 -24.31 4.95 -463.05 -2.29 -26.60 16 5 C 0.56 18.94 6.54 87.66 0.57 19.51 16 6 O -0.57 -21.80 16.48 -3.02 -0.05 -21.85 16 7 C -0.14 -4.15 2.28 -53.68 -0.12 -4.27 16 8 C 0.16 4.94 6.18 42.55 0.26 5.21 16 9 C -0.17 -5.38 9.40 22.36 0.21 -5.17 16 10 C -0.07 -2.02 10.18 22.47 0.23 -1.79 16 11 C -0.17 -4.45 10.11 22.36 0.23 -4.22 16 12 C 0.09 2.49 11.18 84.67 0.95 3.44 16 13 N -0.49 -15.12 9.36 -183.89 -1.72 -16.84 16 14 C -0.12 -2.75 9.75 30.62 0.30 -2.46 16 15 C -0.12 -2.92 9.73 30.62 0.30 -2.62 16 16 C -0.09 -2.86 4.72 30.64 0.14 -2.72 16 17 C -0.12 -3.87 5.74 30.69 0.18 -3.70 16 18 C 0.14 5.53 6.52 86.36 0.56 6.09 16 19 N -0.60 -28.87 2.42 -699.12 -1.69 -30.57 16 20 C -0.26 -13.72 9.58 84.03 0.80 -12.91 16 21 H 0.06 3.07 7.85 -2.91 -0.02 3.05 16 22 C -0.04 -1.92 5.05 84.86 0.43 -1.49 16 23 N -0.92 -50.97 11.05 21.65 0.24 -50.73 16 24 Si 0.95 43.49 29.57 68.60 2.03 45.52 16 25 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 27 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 28 C 0.20 9.28 3.67 86.36 0.32 9.60 16 29 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.06 2.06 5.97 -2.38 -0.01 2.05 16 32 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.40 14.87 6.22 -92.71 -0.58 14.29 16 35 H 0.12 3.92 7.84 -2.91 -0.02 3.90 16 36 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 37 H 0.16 3.22 8.06 -2.91 -0.02 3.20 16 38 H 0.18 3.76 8.06 -2.91 -0.02 3.73 16 39 H 0.11 2.62 7.83 -2.39 -0.02 2.60 16 40 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.12 2.80 7.59 -2.39 -0.02 2.78 16 42 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.06 2.00 6.33 -2.39 -0.02 1.98 16 46 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 48 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.25 13.43 8.31 -92.70 -0.77 12.66 16 50 H 0.06 3.17 5.01 -2.39 -0.01 3.16 16 51 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 Total: -1.00 -64.24 402.05 3.14 -61.09 By element: Atomic # 1 Polarization: 38.64 SS G_CDS: 0.35 Total: 38.99 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 6.29 Total: 1.00 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -5.47 Total: -124.75 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.05 Total: -21.85 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -64.24 3.14 -61.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716894235.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.413 kcal (2) G-P(sol) polarization free energy of solvation -64.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds