Wall clock time and date at job start Wed Apr 1 2020 02:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38227 * 120.41881 * 2 1 4 4 N 1.31857 * 120.76416 * 180.02562 * 3 2 1 5 5 C 1.31882 * 121.72447 * 359.69858 * 4 3 2 6 6 C 1.38188 * 120.76325 * 0.58664 * 5 4 3 7 7 C 1.50697 * 120.41493 * 179.70330 * 6 5 4 8 8 C 1.53001 * 109.47261 * 269.72104 * 7 6 5 9 9 C 1.50697 * 109.47261 * 179.97438 * 8 7 6 10 10 O 1.21278 * 120.00149 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00083 * 180.02562 * 9 8 7 12 12 C 1.46495 * 119.99959 * 179.97438 * 11 9 8 13 13 C 1.53587 * 112.67630 * 300.66376 * 12 11 9 14 14 C 1.54659 * 106.72449 * 238.54832 * 13 12 11 15 15 C 1.54761 * 103.94775 * 335.09031 * 14 13 12 16 16 C 1.54781 * 103.36057 * 37.79926 * 15 14 13 17 17 H 1.08999 * 111.86510 * 85.76989 * 16 15 14 18 18 N 1.46980 * 108.68152 * 209.71113 * 16 15 14 19 19 C 1.36932 * 125.58376 * 294.10445 * 18 16 15 20 20 H 1.08003 * 119.99874 * 0.02562 * 19 18 16 21 21 C 1.38811 * 120.00110 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00015 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00069 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47410 * 60.00036 * 23 21 19 25 25 H 1.48498 * 109.47153 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46938 * 299.99937 * 23 21 19 27 27 C 1.47372 * 108.83638 * 114.12623 * 18 16 15 28 28 C 1.54863 * 104.82403 * 335.31225 * 27 18 16 29 29 C 1.38623 * 120.42166 * 180.02562 * 2 1 3 30 30 H 1.09005 * 109.47320 * 269.98191 * 1 2 3 31 31 H 1.08999 * 109.47030 * 29.98223 * 1 2 3 32 32 H 1.08999 * 109.46976 * 149.98193 * 1 2 3 33 33 H 1.08002 * 119.61502 * 0.03958 * 3 2 1 34 34 H 1.07997 * 119.61547 * 180.31364 * 5 4 3 35 35 H 1.09001 * 109.47324 * 149.72371 * 7 6 5 36 36 H 1.09000 * 109.47342 * 29.72039 * 7 6 5 37 37 H 1.09005 * 109.46493 * 60.00367 * 8 7 6 38 38 H 1.09000 * 109.47468 * 300.00707 * 8 7 6 39 39 H 0.97000 * 119.99716 * 0.02562 * 11 9 8 40 40 H 1.09001 * 110.01521 * 357.86153 * 13 12 11 41 41 H 1.08997 * 110.01679 * 119.20070 * 13 12 11 42 42 H 1.09000 * 110.67728 * 216.45173 * 14 13 12 43 43 H 1.08997 * 110.51086 * 93.65198 * 14 13 12 44 44 H 1.09002 * 110.67220 * 279.28301 * 15 14 13 45 45 H 1.09001 * 110.66738 * 156.31521 * 15 14 13 46 46 H 0.97000 * 119.99814 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.36918 * 94.14516 * 27 18 16 48 48 H 1.08998 * 110.37202 * 216.46951 * 27 18 16 49 49 H 1.08999 * 110.97194 * 155.19015 * 28 27 18 50 50 H 1.09006 * 110.96628 * 278.91501 * 28 27 18 51 51 H 1.08000 * 120.78995 * 359.95873 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1920 0.0000 4 7 3.5254 1.1999 -0.0005 5 6 4.2256 0.0824 0.0049 6 6 3.5947 -1.1471 -0.0009 7 6 4.4027 -2.4192 -0.0014 8 6 4.6755 -2.8495 -1.4441 9 6 5.4840 -4.1212 -1.4446 10 8 5.8095 -4.6333 -0.3945 11 7 5.8454 -4.6896 -2.6120 12 6 6.6318 -5.9256 -2.6125 13 6 7.9783 -5.7709 -1.8902 14 6 9.0784 -6.1192 -2.9200 15 6 8.3621 -7.0452 -3.9322 16 6 6.9489 -6.4244 -4.0469 17 1 6.9155 -5.6250 -4.7870 18 7 5.9885 -7.4938 -4.3543 19 6 5.9536 -8.2250 -5.5115 20 1 6.6745 -8.0342 -6.2927 21 6 4.9916 -9.2113 -5.6805 22 7 4.1128 -9.4435 -4.7286 23 14 4.9445 -10.2093 -7.2589 24 1 6.2315 -10.9308 -7.4271 25 1 3.8317 -11.1903 -7.1912 26 1 4.7323 -9.2997 -8.4134 27 6 5.0689 -7.6499 -3.2133 28 6 5.8580 -7.1158 -1.9925 29 6 2.2089 -1.1954 -0.0005 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8901 -0.5136 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6674 2.1276 0.0006 34 1 5.3046 0.1286 0.0094 35 1 3.8464 -3.2031 0.5125 36 1 5.3489 -2.2488 0.5121 37 1 5.2319 -2.0655 -1.9579 38 1 3.7293 -3.0197 -1.9576 39 1 5.5853 -4.2798 -3.4519 40 1 8.1013 -4.7440 -1.5461 41 1 8.0286 -6.4561 -1.0440 42 1 9.9032 -6.6451 -2.4391 43 1 9.4370 -5.2170 -3.4156 44 1 8.3050 -8.0637 -3.5483 45 1 8.8699 -7.0268 -4.8965 46 1 3.4408 -10.1330 -4.8466 47 1 4.1665 -7.0589 -3.3697 48 1 4.8154 -8.7004 -3.0712 49 1 5.1810 -6.7752 -1.2090 50 1 6.5444 -7.8716 -1.6107 51 1 1.6888 -2.1419 -0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717838436.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:20 Heat of formation + Delta-G solvation = 9.197599 kcal Electronic energy + Delta-G solvation = -30084.506540 eV Core-core repulsion = 26176.514650 eV Total energy + Delta-G solvation = -3907.991891 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.62247 -40.12152 -38.22540 -34.77596 -34.22955 -33.85467 -33.40527 -31.48965 -30.58483 -29.54087 -27.60026 -26.72214 -26.30625 -24.84406 -23.84190 -23.23317 -21.47688 -20.73239 -19.99156 -19.41485 -18.78272 -17.23991 -17.04786 -16.93970 -16.84755 -15.76466 -15.32955 -14.90357 -14.75942 -14.53226 -14.18859 -14.01359 -13.58484 -13.48492 -13.29249 -13.26499 -13.13185 -13.01957 -12.80312 -12.64096 -12.29408 -12.17271 -11.85654 -11.74713 -11.57647 -11.19195 -11.15288 -10.99260 -10.85071 -10.66200 -10.52524 -10.18279 -10.07425 -9.97914 -9.88061 -9.74843 -9.67223 -9.62133 -9.36159 -9.01022 -8.67283 -8.53410 -6.87345 -5.66459 -3.09670 0.82879 1.02544 2.87995 3.36104 3.38305 3.42758 3.43794 3.57450 4.18313 4.44973 4.47367 4.47586 4.72312 4.73227 4.78045 4.90023 4.91666 4.99822 5.16200 5.21980 5.23926 5.31929 5.34014 5.44510 5.50403 5.50809 5.62818 5.64802 5.73214 5.82930 5.85180 5.94673 5.98659 6.00096 6.07967 6.10942 6.14461 6.27531 6.36140 6.41815 6.47077 6.53838 6.59561 6.76932 6.78667 6.99022 7.13365 7.52279 7.62417 7.72752 7.81525 7.87397 8.34932 8.51362 9.19664 9.80677 10.44888 11.36013 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.002445 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.805822 B =11446.983869 C =12797.591367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.136 4.136 3 C 0.089 3.911 4 N -0.481 5.481 5 C 0.093 3.907 6 C -0.124 4.124 7 C -0.060 4.060 8 C -0.136 4.136 9 C 0.512 3.488 10 O -0.540 6.540 11 N -0.705 5.705 12 C 0.162 3.838 13 C -0.108 4.108 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.161 3.839 17 H 0.046 0.954 18 N -0.596 5.596 19 C -0.221 4.221 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.153 3.847 28 C -0.141 4.141 29 C -0.074 4.074 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.399 0.601 40 H 0.058 0.942 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.252 0.748 47 H 0.008 0.992 48 H 0.107 0.893 49 H 0.065 0.935 50 H 0.067 0.933 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.705 17.713 8.926 19.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C -0.069 4.069 4 N -0.188 5.188 5 C -0.063 4.063 6 C -0.126 4.126 7 C -0.098 4.098 8 C -0.176 4.176 9 C 0.298 3.702 10 O -0.417 6.417 11 N -0.355 5.355 12 C 0.075 3.925 13 C -0.147 4.147 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.052 3.948 17 H 0.064 0.936 18 N -0.320 5.320 19 C -0.349 4.349 20 H 0.094 0.906 21 C -0.206 4.206 22 N -0.569 5.569 23 Si 0.744 3.256 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 C 0.028 3.972 28 C -0.180 4.180 29 C -0.100 4.100 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.233 0.767 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.026 0.974 48 H 0.125 0.875 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.186 17.955 9.564 20.378 hybrid contribution -0.701 -1.072 -1.363 1.870 sum -1.888 16.883 8.202 18.864 Atomic orbital electron populations 1.20737 0.90192 1.03269 1.02644 1.20955 0.97631 0.94156 1.01016 1.22645 0.90006 0.97423 0.96796 1.67675 1.08349 1.31293 1.11518 1.22690 1.00320 0.87135 0.96196 1.20975 0.94553 0.96823 1.00283 1.20260 1.00279 0.93334 0.95929 1.21656 1.01295 0.96113 0.98566 1.20468 0.79961 0.85746 0.83991 1.90686 1.55476 1.64347 1.31193 1.45929 1.55151 1.26155 1.08278 1.21601 0.90505 0.83697 0.96668 1.22310 0.93241 1.01369 0.97825 1.22442 0.97407 0.99305 0.97163 1.22953 0.96563 0.99536 0.97960 1.21807 0.90283 0.91290 0.91391 0.93637 1.44525 1.33120 1.37694 1.16647 1.18987 1.11926 1.11401 0.92596 0.90589 1.24780 0.97849 0.99625 0.98317 1.69796 1.19884 1.35146 1.32083 0.86176 0.77106 0.79765 0.82574 1.21162 1.21635 1.21301 1.21962 0.89754 1.02796 0.82661 1.23319 0.99764 0.95570 0.99384 1.21477 0.93522 0.98387 0.96647 0.90872 0.91160 0.91133 0.83053 0.82822 0.89786 0.89723 0.89018 0.88909 0.76676 0.92354 0.91227 0.92238 0.92391 0.90765 0.92433 0.93711 0.97398 0.87510 0.91658 0.91477 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.04 36.00 0.36 -0.28 16 2 C -0.14 -1.14 5.90 -104.48 -0.62 -1.75 16 3 C 0.09 0.81 10.86 -17.54 -0.19 0.62 16 4 N -0.48 -5.27 10.36 -13.25 -0.14 -5.40 16 5 C 0.09 0.93 10.86 -17.55 -0.19 0.74 16 6 C -0.12 -1.18 5.15 -104.48 -0.54 -1.72 16 7 C -0.06 -0.59 4.66 -27.88 -0.13 -0.72 16 8 C -0.14 -1.39 5.68 -27.88 -0.16 -1.54 16 9 C 0.51 7.27 7.00 -10.99 -0.08 7.20 16 10 O -0.54 -9.31 13.86 5.56 0.08 -9.23 16 11 N -0.71 -10.56 5.25 -45.36 -0.24 -10.80 16 12 C 0.16 2.83 0.75 -129.38 -0.10 2.73 16 13 C -0.11 -1.74 5.25 -25.55 -0.13 -1.87 16 14 C -0.12 -1.85 6.87 -24.93 -0.17 -2.02 16 15 C -0.13 -2.33 6.20 -24.87 -0.15 -2.48 16 16 C 0.16 3.14 3.64 -65.60 -0.24 2.90 16 17 H 0.05 0.88 8.02 -51.93 -0.42 0.46 16 18 N -0.60 -14.44 3.03 -161.13 -0.49 -14.93 16 19 C -0.22 -5.89 10.01 -15.06 -0.15 -6.04 16 20 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 21 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -26.35 10.07 55.49 0.56 -25.79 16 23 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.15 3.68 5.90 -2.58 -0.02 3.66 16 28 C -0.14 -2.84 5.75 -24.74 -0.14 -2.98 16 29 C -0.07 -0.67 9.54 -39.28 -0.37 -1.04 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 32 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 33 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.15 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.08 0.90 8.05 -51.93 -0.42 0.48 16 36 H 0.08 0.85 8.05 -51.93 -0.42 0.43 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.40 5.32 8.52 -40.82 -0.35 4.97 16 40 H 0.06 0.91 7.43 -51.93 -0.39 0.52 16 41 H 0.07 1.16 7.37 -51.93 -0.38 0.78 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 47 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 48 H 0.11 2.93 5.83 -51.93 -0.30 2.62 16 49 H 0.06 1.33 6.82 -51.93 -0.35 0.97 16 50 H 0.07 1.36 7.62 -51.93 -0.40 0.97 16 51 H 0.14 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 402.29 15.07 6.06 6.06 Total: -1.00 -31.51 402.29 -10.76 -42.27 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -8.46 Total: 6.17 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -3.11 Total: -4.98 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.30 Total: -56.92 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.51 -10.76 -42.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717838436.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.463 kcal (2) G-P(sol) polarization free energy of solvation -31.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds