Wall clock time and date at job start Wed Apr 1 2020 02:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.45803 * 2 1 4 4 C 1.34778 * 119.99887 * 299.97558 * 3 2 1 5 5 O 1.21281 * 119.99876 * 359.97438 * 4 3 2 6 6 C 1.50698 * 119.99878 * 180.02562 * 4 3 2 7 7 N 1.46903 * 109.47415 * 173.94310 * 6 4 3 8 8 C 1.47896 * 111.00069 * 283.31269 * 7 6 4 9 9 C 1.54602 * 102.63142 * 265.33387 * 8 7 6 10 10 C 1.51575 * 102.81354 * 334.39766 * 9 8 7 11 11 C 1.37921 * 131.56216 * 196.30491 * 10 9 8 12 12 C 1.38299 * 120.07601 * 179.65431 * 11 10 9 13 13 C 1.38311 * 119.88542 * 359.97438 * 12 11 10 14 14 C 1.37906 * 120.26613 * 0.11106 * 13 12 11 15 15 C 1.38969 * 107.94913 * 16.18212 * 10 9 8 16 16 C 1.53037 * 109.46259 * 119.97304 * 2 1 3 17 17 C 1.53191 * 109.33813 * 181.36870 * 16 2 1 18 18 N 1.46931 * 108.77605 * 305.41571 * 17 16 2 19 19 C 1.36932 * 120.60885 * 233.57971 * 18 17 16 20 20 H 1.08001 * 119.99872 * 35.19612 * 19 18 17 21 21 C 1.38817 * 120.00289 * 215.19443 * 19 18 17 22 22 N 1.31617 * 119.99725 * 12.20940 * 21 19 18 23 23 Si 1.86796 * 119.99997 * 192.20256 * 21 19 18 24 24 H 1.48498 * 109.47303 * 60.00338 * 23 21 19 25 25 H 1.48508 * 109.47059 * 180.02562 * 23 21 19 26 26 H 1.48507 * 109.47402 * 300.00155 * 23 21 19 27 27 C 1.46932 * 118.76553 * 53.54944 * 18 17 16 28 28 C 1.53039 * 109.45720 * 240.04167 * 2 1 3 29 29 H 1.09004 * 109.47167 * 300.01980 * 1 2 3 30 30 H 1.08991 * 109.47622 * 60.02794 * 1 2 3 31 31 H 1.09008 * 109.46947 * 180.02562 * 1 2 3 32 32 H 0.96999 * 119.99896 * 119.97542 * 3 2 1 33 33 H 1.09006 * 109.46889 * 293.94005 * 6 4 3 34 34 H 1.08997 * 109.47446 * 53.93890 * 6 4 3 35 35 H 1.09006 * 110.78074 * 23.62198 * 8 7 6 36 36 H 1.09004 * 110.78217 * 147.04695 * 8 7 6 37 37 H 1.08998 * 110.74694 * 216.06671 * 9 8 7 38 38 H 1.09006 * 110.74121 * 92.72979 * 9 8 7 39 39 H 1.07997 * 119.96042 * 359.63200 * 11 10 9 40 40 H 1.08006 * 120.05804 * 180.02562 * 12 11 10 41 41 H 1.08001 * 119.86456 * 180.08755 * 13 12 11 42 42 H 1.07990 * 119.90192 * 180.02562 * 14 13 12 43 43 H 1.08992 * 109.49980 * 301.33531 * 16 2 1 44 44 H 1.08996 * 109.49760 * 61.40377 * 16 2 1 45 45 H 1.09003 * 109.59185 * 65.16770 * 17 16 2 46 46 H 1.08998 * 109.59197 * 185.59547 * 17 16 2 47 47 H 0.96997 * 119.99689 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.58839 * 186.62756 * 27 18 17 49 49 H 1.09002 * 109.69686 * 66.27218 * 27 18 17 50 50 H 1.08992 * 109.50265 * 298.56091 * 28 2 1 51 51 H 1.09010 * 109.49946 * 58.63315 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3813 0.0000 4 6 1.6926 2.2110 -1.0111 5 8 0.9962 1.8138 -1.9211 6 6 2.1951 3.6317 -1.0114 7 7 1.8286 4.2805 -2.2774 8 6 2.7137 3.8368 -3.3760 9 6 3.8000 4.9366 -3.4003 10 6 3.0796 6.1336 -2.8122 11 6 3.3798 7.4797 -2.8259 12 6 2.5358 8.3843 -2.2079 13 6 1.3895 7.9369 -1.5762 14 6 1.0857 6.5919 -1.5582 15 6 1.9329 5.6733 -2.1762 16 6 2.0399 -0.7209 1.2499 17 6 3.5714 -0.6894 1.2644 18 7 4.0679 -1.2487 -0.0003 19 6 4.9761 -2.2735 -0.0005 20 1 4.9306 -3.0355 0.7634 21 6 5.9553 -2.3330 -0.9827 22 7 6.1674 -1.2954 -1.7642 23 14 6.9720 -3.8856 -1.1951 24 1 6.0747 -5.0252 -1.5137 25 1 7.9422 -3.6942 -2.3030 26 1 7.7077 -4.1715 0.0628 27 6 3.5713 -0.6884 -1.2645 28 6 2.0398 -0.7206 -1.2502 29 1 -0.3634 0.5142 0.8898 30 1 -0.3634 0.5133 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 2.5753 1.6988 0.7277 33 1 1.7458 4.1762 -0.1808 34 1 3.2796 3.6336 -0.9027 35 1 3.1526 2.8648 -3.1505 36 1 2.1719 3.8075 -4.3214 37 1 4.1189 5.1418 -4.4222 38 1 4.6497 4.6538 -2.7789 39 1 4.2751 7.8276 -3.3195 40 1 2.7709 9.4384 -2.2191 41 1 0.7299 8.6438 -1.0949 42 1 0.1890 6.2491 -1.0637 43 1 1.6573 -0.2210 2.1397 44 1 1.6974 -1.7556 1.2383 45 1 3.9148 0.3400 1.3679 46 1 3.9414 -1.2857 2.0984 47 1 6.8518 -1.3369 -2.4502 48 1 3.9416 -1.2841 -2.0987 49 1 3.9141 0.3410 -1.3700 50 1 1.6978 -1.7554 -1.2386 51 1 1.6566 -0.2207 -2.1400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754631195.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:56:07 Heat of formation + Delta-G solvation = 33.203748 kcal Electronic energy + Delta-G solvation = -31192.692365 eV Core-core repulsion = 27285.741460 eV Total energy + Delta-G solvation = -3906.950906 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.01780 -39.81049 -37.51315 -36.48404 -34.32032 -32.61144 -31.93532 -30.96591 -29.94089 -29.86971 -28.96741 -27.40281 -26.57836 -24.06139 -23.13439 -22.27346 -21.78179 -21.34436 -20.85436 -20.07639 -18.61762 -17.09999 -16.95871 -16.56910 -16.25060 -15.46326 -15.23268 -15.00466 -14.82525 -14.41463 -14.07640 -13.82039 -13.72459 -13.48607 -13.35385 -13.21244 -13.17444 -12.90475 -12.64290 -12.46236 -12.32278 -12.03335 -11.70256 -11.65286 -11.58317 -11.38784 -11.24538 -11.05010 -10.97428 -10.91498 -10.74688 -10.40256 -10.24309 -10.00527 -9.87434 -9.58349 -9.51376 -8.95114 -8.92082 -8.51602 -8.47514 -7.96228 -6.56049 -5.80017 -3.30630 1.15598 1.24131 3.00836 3.23307 3.36501 3.42167 3.43289 3.60128 3.82455 4.47558 4.49253 4.67140 4.85577 4.87355 4.95368 5.05246 5.11172 5.27079 5.30214 5.32981 5.37332 5.38931 5.46492 5.47536 5.55263 5.62009 5.69966 5.80451 5.83942 5.97859 6.04776 6.05283 6.15270 6.22145 6.22891 6.30958 6.35940 6.39112 6.48529 6.55199 6.60265 6.69325 6.74239 6.78314 6.85574 6.94503 7.12962 7.18074 7.38918 7.66554 7.79314 7.97165 8.49083 8.67006 9.22189 9.82772 10.43944 11.27710 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013836 B = 0.003042 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.267989 B = 9203.206331 C =10489.311751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.187 3.813 3 N -0.713 5.713 4 C 0.516 3.484 5 O -0.519 6.519 6 C 0.038 3.962 7 N -0.471 5.471 8 C 0.058 3.942 9 C -0.115 4.115 10 C -0.136 4.136 11 C -0.090 4.090 12 C -0.135 4.135 13 C -0.107 4.107 14 C -0.113 4.113 15 C 0.094 3.906 16 C -0.138 4.138 17 C 0.147 3.853 18 N -0.589 5.589 19 C -0.259 4.259 20 H 0.060 0.940 21 C 0.010 3.990 22 N -0.899 5.899 23 Si 0.902 3.098 24 H -0.283 1.283 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.184 3.816 28 C -0.151 4.151 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.395 0.605 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.013 0.987 46 H 0.055 0.945 47 H 0.254 0.746 48 H 0.073 0.927 49 H 0.016 0.984 50 H 0.058 0.942 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.427 16.549 1.903 18.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.102 3.898 3 N -0.365 5.365 4 C 0.301 3.699 5 O -0.394 6.394 6 C -0.091 4.091 7 N -0.187 5.187 8 C -0.068 4.068 9 C -0.153 4.153 10 C -0.138 4.138 11 C -0.109 4.109 12 C -0.154 4.154 13 C -0.125 4.125 14 C -0.133 4.133 15 C -0.003 4.003 16 C -0.177 4.177 17 C 0.020 3.980 18 N -0.312 5.312 19 C -0.389 4.389 20 H 0.078 0.922 21 C -0.189 4.189 22 N -0.543 5.543 23 Si 0.731 3.269 24 H -0.209 1.209 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.059 3.941 28 C -0.191 4.191 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.230 0.770 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.031 0.969 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.091 0.909 49 H 0.034 0.966 50 H 0.076 0.924 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.324 16.027 1.006 18.569 hybrid contribution 1.663 -0.395 0.372 1.749 sum -7.662 15.631 1.377 17.462 Atomic orbital electron populations 1.22223 0.95509 1.01748 1.02318 1.20219 0.92479 0.80101 0.97005 1.46074 1.53384 1.12126 1.24946 1.20177 0.80775 0.86639 0.82354 1.90632 1.37048 1.76450 1.35259 1.22110 1.00540 0.94042 0.92409 1.59666 1.52666 1.01875 1.04540 1.23157 0.90982 0.97984 0.94695 1.21781 0.98940 0.92572 1.02001 1.21102 0.95688 0.94887 1.02151 1.20411 0.99633 0.91397 0.99463 1.21034 0.95479 0.99343 0.99523 1.20904 0.97308 0.94853 0.99457 1.20516 0.99188 0.91949 1.01601 1.19612 0.93702 0.89102 0.97844 1.22335 0.99700 1.00462 0.95220 1.20876 0.90318 0.96140 0.90689 1.43959 1.48443 1.39575 0.99238 1.19058 1.05918 1.00704 1.13229 0.92211 1.25232 0.96641 0.96944 1.00121 1.69986 1.33882 1.28094 1.22291 0.86398 0.79858 0.83202 0.77393 1.20923 1.21631 1.20843 1.20563 0.87245 0.96687 0.89627 1.22583 1.00712 0.99077 0.96761 0.93596 0.90728 0.92404 0.77031 0.88166 0.90998 0.89056 0.89055 0.89443 0.89768 0.86243 0.85920 0.85730 0.85865 0.92711 0.90824 0.96922 0.92690 0.93628 0.90855 0.96617 0.92353 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 8.40 37.16 0.31 -2.12 16 2 C 0.19 3.11 0.66 -131.78 -0.09 3.03 16 3 N -0.71 -10.86 4.10 -47.57 -0.20 -11.05 16 4 C 0.52 8.14 6.74 -10.99 -0.07 8.06 16 5 O -0.52 -9.75 12.27 5.56 0.07 -9.68 16 6 C 0.04 0.50 5.23 -4.98 -0.03 0.47 16 7 N -0.47 -6.54 4.58 -170.38 -0.78 -7.32 16 8 C 0.06 0.79 6.39 -2.43 -0.02 0.77 16 9 C -0.11 -1.33 6.93 -26.61 -0.18 -1.51 16 10 C -0.14 -1.61 6.23 -104.04 -0.65 -2.26 16 11 C -0.09 -0.92 10.03 -39.67 -0.40 -1.32 16 12 C -0.14 -1.23 10.06 -39.53 -0.40 -1.62 16 13 C -0.11 -0.98 10.02 -39.68 -0.40 -1.38 16 14 C -0.11 -1.24 10.04 -39.27 -0.39 -1.63 16 15 C 0.09 1.18 5.49 -83.40 -0.46 0.73 16 16 C -0.14 -2.23 4.96 -26.61 -0.13 -2.37 16 17 C 0.15 2.87 6.24 -3.71 -0.02 2.85 16 18 N -0.59 -14.29 2.96 -172.31 -0.51 -14.80 16 19 C -0.26 -7.00 9.52 -15.06 -0.14 -7.14 16 20 H 0.06 1.59 7.86 -52.49 -0.41 1.18 16 21 C 0.01 0.28 4.98 -17.43 -0.09 0.20 16 22 N -0.90 -25.79 11.45 55.49 0.64 -25.15 16 23 Si 0.90 21.53 29.57 -169.99 -5.03 16.50 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.18 4.37 4.98 -3.71 -0.02 4.35 16 28 C -0.15 -3.03 4.67 -26.61 -0.12 -3.16 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.27 6.17 -51.93 -0.32 0.95 16 31 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.40 5.37 7.27 -40.82 -0.30 5.07 16 33 H 0.10 1.12 7.94 -51.93 -0.41 0.71 16 34 H 0.07 0.92 7.94 -51.93 -0.41 0.50 16 35 H 0.09 1.38 7.37 -51.93 -0.38 1.00 16 36 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 40 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.01 0.25 6.94 -51.93 -0.36 -0.11 16 46 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.07 1.99 6.47 -51.93 -0.34 1.66 16 49 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 50 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 51 H 0.07 1.49 6.20 -51.92 -0.32 1.17 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -31.26 393.32 -11.45 -42.71 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -8.28 Total: 6.91 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -3.30 Total: -4.05 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.85 Total: -58.32 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.26 -11.45 -42.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754631195.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.916 kcal (2) G-P(sol) polarization free energy of solvation -31.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds