Wall clock time and date at job start Wed Apr 1 2020 02:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 110.88299 * 2 1 4 4 N 1.46497 * 109.47289 * 62.42579 * 3 2 1 5 5 C 1.36936 * 119.99904 * 179.97438 * 4 3 2 6 6 H 1.07994 * 120.00335 * 0.02562 * 5 4 3 7 7 C 1.38810 * 120.00003 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00287 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00202 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46844 * 60.00602 * 9 7 5 11 11 H 1.48501 * 109.47176 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47108 * 300.00667 * 9 7 5 13 13 C 1.55155 * 111.00355 * 123.87662 * 2 1 3 14 14 C 1.54325 * 102.94120 * 82.61288 * 13 2 1 15 15 N 1.47025 * 107.27083 * 22.19113 * 14 13 2 16 16 C 1.34773 * 125.64787 * 181.02494 * 15 14 13 17 17 O 1.21283 * 119.99988 * 185.06595 * 16 15 14 18 18 C 1.50704 * 120.00197 * 5.06525 * 16 15 14 19 19 H 1.08998 * 109.25166 * 24.42740 * 18 16 15 20 20 C 1.52723 * 109.25141 * 264.95644 * 18 16 15 21 21 C 1.53329 * 108.44000 * 188.45781 * 20 18 16 22 22 C 1.52771 * 108.38756 * 69.82322 * 21 20 18 23 23 C 1.50512 * 110.54817 * 309.19300 * 22 21 20 24 24 C 1.39186 * 117.96231 * 197.22497 * 23 22 21 25 25 C 1.38406 * 118.86745 * 180.52657 * 24 23 22 26 26 C 1.38240 * 118.84162 * 359.97438 * 25 24 23 27 27 N 1.31512 * 120.61608 * 359.87042 * 26 25 24 28 28 C 1.32705 * 122.39625 * 0.03904 * 27 26 25 29 29 C 1.47425 * 108.70325 * 1.28837 * 15 14 13 30 30 H 1.09001 * 109.47118 * 297.57302 * 1 2 3 31 31 H 1.09005 * 109.47294 * 57.57278 * 1 2 3 32 32 H 1.09005 * 109.46891 * 177.57474 * 1 2 3 33 33 H 1.08998 * 109.46503 * 182.42742 * 3 2 1 34 34 H 1.08999 * 109.47180 * 302.42452 * 3 2 1 35 35 H 0.97005 * 119.99997 * 0.02562 * 4 3 2 36 36 H 0.96994 * 120.00309 * 179.97438 * 8 7 5 37 37 H 1.09005 * 110.71955 * 324.25269 * 13 2 1 38 38 H 1.08997 * 110.86976 * 201.04540 * 13 2 1 39 39 H 1.09004 * 109.88017 * 262.77253 * 14 13 2 40 40 H 1.08998 * 109.88325 * 141.61213 * 14 13 2 41 41 H 1.08994 * 109.64450 * 68.77648 * 20 18 16 42 42 H 1.09003 * 109.81920 * 308.24120 * 20 18 16 43 43 H 1.08991 * 109.69056 * 189.55842 * 21 20 18 44 44 H 1.09002 * 109.68389 * 310.08853 * 21 20 18 45 45 H 1.09001 * 109.26232 * 69.43186 * 22 21 20 46 46 H 1.09000 * 109.26178 * 188.88280 * 22 21 20 47 47 H 1.07997 * 120.56162 * 0.50346 * 24 23 22 48 48 H 1.07998 * 120.58142 * 180.02562 * 25 24 23 49 49 H 1.08005 * 119.69570 * 179.86130 * 26 25 24 50 50 H 1.08997 * 110.36789 * 94.47875 * 29 15 14 51 51 H 1.09005 * 110.36439 * 216.80923 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0754 1.4295 0.0000 4 7 1.6522 2.1137 1.2243 5 6 2.0243 3.4127 1.4463 6 1 2.6295 3.9329 0.7187 7 6 1.6228 4.0612 2.6061 8 7 0.8849 3.4274 3.4927 9 14 2.1299 5.8334 2.9086 10 1 1.6037 6.6920 1.8172 11 1 1.5777 6.2912 4.2089 12 1 3.6116 5.9258 2.9404 13 6 2.0861 -0.8074 1.2026 14 6 2.0295 -2.2642 0.6966 15 7 2.0153 -2.2157 -0.7728 16 6 1.9494 -3.2829 -1.5933 17 8 2.0367 -3.1313 -2.7935 18 6 1.7672 -4.6645 -1.0196 19 1 1.2889 -4.5879 -0.0431 20 6 3.1336 -5.3278 -0.8605 21 6 2.9179 -6.7974 -0.4799 22 6 2.3436 -7.5297 -1.6914 23 6 1.1539 -6.7895 -2.2410 24 6 0.2949 -7.4764 -3.0939 25 6 -0.7990 -6.8105 -3.6189 26 6 -1.0006 -5.4862 -3.2774 27 7 -0.1693 -4.8699 -2.4658 28 6 0.8895 -5.4730 -1.9401 29 6 2.0917 -0.8068 -1.2000 30 1 -0.3633 0.4757 0.9110 31 1 -0.3634 0.5511 -0.8675 32 1 -0.3633 -1.0268 -0.0435 33 1 3.1642 1.4029 -0.0435 34 1 1.6901 1.9654 -0.8674 35 1 1.1089 1.6463 1.8780 36 1 0.6046 3.8804 4.3033 37 1 1.4519 -0.6789 2.0797 38 1 3.1127 -0.5159 1.4245 39 1 1.1229 -2.7480 1.0603 40 1 2.9074 -2.8107 1.0411 41 1 3.6960 -4.8245 -0.0741 42 1 3.6843 -5.2696 -1.7994 43 1 3.8695 -7.2468 -0.1964 44 1 2.2186 -6.8619 0.3537 45 1 3.1093 -7.6025 -2.4638 46 1 2.0376 -8.5326 -1.3936 47 1 0.4790 -8.5112 -3.3421 48 1 -1.4837 -7.3169 -4.2832 49 1 -1.8485 -4.9527 -3.6809 50 1 3.1260 -0.5259 -1.3981 51 1 1.4774 -0.6453 -2.0859 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754703301.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:27 Heat of formation + Delta-G solvation = -20.020171 kcal Electronic energy + Delta-G solvation = -30433.785304 eV Core-core repulsion = 26524.526436 eV Total energy + Delta-G solvation = -3909.258868 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.05114 -40.94498 -39.21261 -37.35444 -36.46701 -34.49304 -34.08560 -32.13741 -31.42854 -30.93674 -30.56999 -28.08049 -27.26941 -25.59690 -24.59979 -24.21268 -24.03479 -23.46608 -20.93271 -20.43018 -19.94196 -19.16540 -18.23483 -17.66062 -17.50372 -17.04960 -16.53470 -16.40629 -16.08340 -15.54577 -15.45372 -15.29899 -15.05804 -14.92636 -14.74951 -14.61151 -14.29129 -14.03404 -13.80901 -13.76986 -13.65067 -13.45218 -13.27533 -12.99522 -12.95275 -12.84884 -12.83192 -12.59226 -12.24628 -12.18013 -12.07291 -11.85141 -11.62419 -11.53349 -11.49770 -11.46077 -10.91457 -10.88134 -10.56714 -10.28177 -9.70958 -9.64365 -8.95669 -7.92268 -5.19719 0.14708 0.37322 1.48968 1.51306 1.57259 1.60591 1.94881 2.58034 2.82158 3.14248 3.33225 3.41524 3.59517 3.60773 3.70614 3.83201 3.85370 3.93003 4.06134 4.13856 4.17402 4.22166 4.22827 4.31574 4.34683 4.36283 4.39292 4.57902 4.61815 4.67692 4.69475 4.76837 4.82204 4.85231 4.87931 4.92344 4.99396 5.04818 5.07818 5.09536 5.15620 5.17510 5.26976 5.29843 5.31559 5.36737 5.39166 5.42901 5.52245 5.80652 6.30001 6.52357 7.09268 7.14824 7.37681 8.12414 8.38533 9.30861 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024498 B = 0.002217 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.658885 B =12624.405924 C =13083.423076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.071 4.071 3 C 0.170 3.830 4 N -0.735 5.735 5 C -0.244 4.244 6 H 0.072 0.928 7 C -0.072 4.072 8 N -0.966 5.966 9 Si 0.970 3.030 10 H -0.282 1.282 11 H -0.295 1.295 12 H -0.278 1.278 13 C -0.111 4.111 14 C 0.105 3.895 15 N -0.614 5.614 16 C 0.546 3.454 17 O -0.581 6.581 18 C -0.046 4.046 19 H 0.116 0.884 20 C -0.107 4.107 21 C -0.112 4.112 22 C -0.078 4.078 23 C -0.126 4.126 24 C -0.083 4.083 25 C -0.168 4.168 26 C 0.077 3.923 27 N -0.515 5.515 28 C 0.120 3.880 29 C 0.126 3.874 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.015 0.985 35 H 0.378 0.622 36 H 0.251 0.749 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.100 0.900 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.103 0.897 47 H 0.168 0.832 48 H 0.165 0.835 49 H 0.162 0.838 50 H 0.070 0.930 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 -29.613 -9.163 31.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.072 4.072 3 C 0.043 3.957 4 N -0.378 5.378 5 C -0.376 4.376 6 H 0.090 0.910 7 C -0.264 4.264 8 N -0.617 5.617 9 Si 0.799 3.201 10 H -0.208 1.208 11 H -0.221 1.221 12 H -0.204 1.204 13 C -0.149 4.149 14 C -0.017 4.017 15 N -0.346 5.346 16 C 0.335 3.665 17 O -0.460 6.460 18 C -0.068 4.068 19 H 0.134 0.866 20 C -0.145 4.145 21 C -0.150 4.150 22 C -0.115 4.115 23 C -0.128 4.128 24 C -0.109 4.109 25 C -0.187 4.187 26 C -0.082 4.082 27 N -0.224 5.224 28 C -0.016 4.016 29 C 0.003 3.997 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.033 0.967 35 H 0.212 0.788 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.099 0.901 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.078 0.922 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.121 0.879 47 H 0.185 0.815 48 H 0.182 0.818 49 H 0.179 0.821 50 H 0.088 0.912 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.755 -28.573 -9.669 30.215 hybrid contribution -0.303 0.829 0.001 0.882 sum 1.452 -27.744 -9.668 29.416 Atomic orbital electron populations 1.21538 0.93518 1.01013 1.01481 1.21793 0.96087 0.94130 0.95159 1.20623 0.96231 0.90055 0.88800 1.42421 1.63037 1.11435 1.20951 1.19557 1.25597 0.90007 1.02454 0.91023 1.25479 1.01405 1.02193 0.97341 1.69784 1.42570 1.38013 1.11319 0.85263 0.77849 0.80392 0.76547 1.20801 1.22123 1.20445 1.22584 1.02219 0.92792 0.97271 1.22243 1.03336 0.97876 0.78275 1.48517 1.72483 1.05647 1.08002 1.20345 0.74716 0.85900 0.85527 1.90647 1.52036 1.86481 1.16845 1.20164 0.98048 0.89737 0.98835 0.86575 1.21572 0.92386 0.97587 1.02969 1.21583 1.03065 0.92690 0.97625 1.20564 0.93661 0.99134 0.98141 1.20782 0.99181 0.93967 0.98859 1.22009 0.93023 1.01603 0.94262 1.22454 0.99473 0.95505 1.01317 1.22983 0.97608 0.93492 0.94149 1.67412 1.04511 1.40227 1.10229 1.20602 0.92846 0.91658 0.96477 1.22109 1.00598 0.80363 0.96663 0.93124 0.93459 0.92256 0.95710 0.96748 0.78842 0.94003 0.90164 0.90538 0.90088 0.88543 0.88737 0.92201 0.88105 0.90446 0.89666 0.87860 0.81470 0.81767 0.82070 0.91166 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.41 71.98 0.61 -3.34 16 2 C -0.07 -2.29 0.62 -50.71 -0.03 -2.33 16 3 C 0.17 6.83 5.23 86.38 0.45 7.28 16 4 N -0.74 -36.56 5.17 -343.46 -1.78 -38.33 16 5 C -0.24 -13.57 9.99 84.03 0.84 -12.73 16 6 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 7 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 8 N -0.97 -58.19 13.06 21.65 0.28 -57.91 16 9 Si 0.97 46.08 29.55 68.60 2.03 48.11 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 13 C -0.11 -3.12 5.38 31.78 0.17 -2.95 16 14 C 0.10 2.30 5.86 86.73 0.51 2.81 16 15 N -0.61 -17.01 3.31 -811.34 -2.69 -19.70 16 16 C 0.55 16.33 6.36 87.66 0.56 16.89 16 17 O -0.58 -22.50 16.43 -3.04 -0.05 -22.55 16 18 C -0.05 -1.01 2.32 -12.37 -0.03 -1.04 16 19 H 0.12 2.19 6.87 -2.39 -0.02 2.18 16 20 C -0.11 -1.64 5.23 30.61 0.16 -1.48 16 21 C -0.11 -1.05 5.98 30.63 0.18 -0.86 16 22 C -0.08 -0.79 5.69 29.71 0.17 -0.62 16 23 C -0.13 -2.21 5.74 -19.84 -0.11 -2.33 16 24 C -0.08 -1.18 9.75 22.54 0.22 -0.96 16 25 C -0.17 -2.61 10.12 22.31 0.23 -2.39 16 26 C 0.08 1.71 11.19 84.74 0.95 2.66 16 27 N -0.51 -14.72 9.21 -184.00 -1.69 -16.42 16 28 C 0.12 2.91 5.83 42.28 0.25 3.15 16 29 C 0.13 3.91 5.83 86.93 0.51 4.41 16 30 H 0.05 1.87 7.19 -2.39 -0.02 1.86 16 31 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.06 1.81 7.89 -2.38 -0.02 1.79 16 33 H 0.03 0.99 8.10 -2.39 -0.02 0.97 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.38 19.64 6.37 -92.70 -0.59 19.05 16 36 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.08 2.40 7.95 -2.38 -0.02 2.38 16 38 H 0.08 2.23 8.04 -2.39 -0.02 2.21 16 39 H 0.08 1.59 7.62 -2.38 -0.02 1.57 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.12 8.08 -2.39 -0.02 1.10 16 43 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.08 0.66 8.10 -2.39 -0.02 0.64 16 45 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.10 0.56 8.13 -2.39 -0.02 0.54 16 47 H 0.17 1.12 8.06 -2.91 -0.02 1.10 16 48 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 49 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 50 H 0.07 2.13 8.01 -2.39 -0.02 2.11 16 51 H 0.06 2.05 8.01 -2.38 -0.02 2.03 16 Total: -1.00 -76.64 402.61 2.51 -74.12 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: 0.33 Total: 30.12 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 6.09 Total: 2.56 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -5.88 Total: -132.36 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -76.64 2.51 -74.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754703301.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.104 kcal (2) G-P(sol) polarization free energy of solvation -76.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds