Wall clock time and date at job start Wed Apr 1 2020 02:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.52268 * 2 1 4 4 C 1.52760 * 109.56806 * 240.04465 * 2 1 3 5 5 N 1.46926 * 109.00434 * 185.55696 * 4 2 1 6 6 C 1.36944 * 120.62524 * 233.57880 * 5 4 2 7 7 H 1.08006 * 119.99668 * 151.31927 * 6 5 4 8 8 C 1.38807 * 120.00333 * 331.32502 * 6 5 4 9 9 N 1.31617 * 120.00050 * 160.73351 * 8 6 5 10 10 Si 1.86804 * 119.99858 * 340.73940 * 8 6 5 11 11 H 1.48495 * 109.47308 * 95.16163 * 10 8 6 12 12 H 1.48498 * 109.46832 * 215.16270 * 10 8 6 13 13 H 1.48500 * 109.46907 * 335.16135 * 10 8 6 14 14 C 1.46923 * 118.74241 * 53.30762 * 5 4 2 15 15 C 1.53187 * 108.77603 * 306.64172 * 14 5 4 16 16 C 1.53042 * 109.31387 * 54.63563 * 15 14 5 17 17 H 1.08999 * 109.45995 * 58.65082 * 16 15 14 18 18 N 1.46498 * 109.46301 * 178.62855 * 16 15 14 19 19 C 1.34776 * 119.99748 * 274.99919 * 18 16 15 20 20 O 1.21514 * 119.99835 * 0.02562 * 19 18 16 21 21 C 1.48175 * 119.99786 * 179.97438 * 19 18 16 22 22 C 1.39309 * 119.72121 * 180.02562 * 21 19 18 23 23 C 1.38588 * 119.05701 * 179.97438 * 22 21 19 24 24 C 1.38630 * 118.48766 * 0.02562 * 23 22 21 25 25 C 1.50701 * 120.32112 * 179.97438 * 24 23 22 26 26 C 1.52999 * 117.49748 * 188.74549 * 25 24 23 27 27 C 1.53001 * 117.49358 * 120.08596 * 25 24 23 28 28 C 1.38553 * 119.35306 * 359.97438 * 24 23 22 29 29 N 1.31529 * 120.90520 * 359.74456 * 28 24 23 30 30 H 1.08989 * 109.47870 * 299.92380 * 1 2 3 31 31 H 1.09007 * 109.46654 * 59.92477 * 1 2 3 32 32 H 1.09001 * 109.46763 * 179.91401 * 1 2 3 33 33 H 1.09001 * 109.46895 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47218 * 300.07650 * 3 2 1 35 35 H 1.08999 * 109.47090 * 60.07709 * 3 2 1 36 36 H 1.08997 * 109.51160 * 65.67262 * 4 2 1 37 37 H 1.09007 * 109.42858 * 305.38652 * 4 2 1 38 38 H 0.97004 * 119.99787 * 179.97438 * 9 8 6 39 39 H 1.09003 * 109.58294 * 66.43079 * 14 5 4 40 40 H 1.09003 * 109.58490 * 186.71023 * 14 5 4 41 41 H 1.09003 * 109.49854 * 174.58496 * 15 14 5 42 42 H 1.09004 * 109.49981 * 294.65260 * 15 14 5 43 43 H 0.96998 * 120.00010 * 94.99511 * 18 16 15 44 44 H 1.08000 * 120.46943 * 359.97438 * 22 21 19 45 45 H 1.08000 * 120.75509 * 180.02562 * 23 22 21 46 46 H 1.09001 * 115.55238 * 334.41779 * 25 24 23 47 47 H 1.08999 * 117.49869 * 0.02562 * 26 25 24 48 48 H 1.08993 * 117.49910 * 145.02513 * 26 25 24 49 49 H 1.09008 * 117.49710 * 214.97776 * 27 25 24 50 50 H 1.08997 * 117.50123 * 359.97438 * 27 25 24 51 51 H 1.08004 * 119.54925 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0417 -0.7187 -1.2471 5 7 3.5047 -0.8291 -1.1693 6 6 4.2938 -0.3785 -2.1938 7 1 5.2949 -0.0278 -1.9903 8 6 3.8071 -0.3724 -3.4938 9 7 4.3777 0.3849 -4.4066 10 14 2.3421 -1.4389 -3.9476 11 1 1.0973 -0.6340 -3.8585 12 1 2.5075 -1.9428 -5.3346 13 1 2.2568 -2.5876 -3.0103 14 6 4.1053 -1.4266 0.0311 15 6 3.5708 -0.6949 1.2662 16 6 2.0407 -0.7230 1.2485 17 1 1.6966 -1.7572 1.2354 18 7 1.5263 -0.0525 2.4452 19 6 1.3969 -0.7379 3.5984 20 8 1.7073 -1.9118 3.6457 21 6 0.8771 -0.0596 4.8090 22 6 0.7462 -0.7734 5.9981 23 6 0.2591 -0.1252 7.1221 24 6 -0.0807 1.2147 7.0174 25 6 -0.6148 1.9598 8.2135 26 6 -1.1604 3.3702 7.9813 27 6 0.1770 3.1752 8.7000 28 6 0.0756 1.8621 5.8025 29 7 0.5454 1.2242 4.7526 30 1 -0.3634 0.5126 0.8905 31 1 -0.3633 0.5150 -0.8894 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1313 1.4410 -0.0005 34 1 1.6773 1.9566 -0.8893 35 1 1.6796 1.9558 0.8907 36 1 1.7648 -0.1497 -2.1345 37 1 1.6022 -1.7150 -1.2974 38 1 4.0378 0.3888 -5.3151 39 1 3.8375 -2.4818 0.0870 40 1 5.1898 -1.3268 -0.0146 41 1 3.9333 -1.1896 2.1674 42 1 3.9163 0.3389 1.2546 43 1 1.2789 0.8846 2.4075 44 1 1.0204 -1.8170 6.0434 45 1 0.1469 -0.6520 8.0582 46 1 -1.1092 1.3467 8.9670 47 1 -1.1333 3.7590 6.9634 48 1 -2.0134 3.6851 8.5823 49 1 0.2033 3.3619 9.7736 50 1 1.0845 3.4355 8.1552 51 1 -0.1878 2.9061 5.7175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941194708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:13 Heat of formation + Delta-G solvation = 47.956092 kcal Electronic energy + Delta-G solvation = -30526.997755 eV Core-core repulsion = 26620.686559 eV Total energy + Delta-G solvation = -3906.311196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.03199 -39.87382 -38.34054 -37.35952 -34.77762 -33.24097 -32.66334 -32.03415 -31.34639 -29.96498 -26.87282 -26.34173 -25.85223 -24.53063 -24.24878 -22.81697 -22.69729 -21.36057 -20.57687 -20.44566 -18.91109 -17.93574 -17.40656 -16.76042 -16.11706 -15.68392 -15.36783 -15.23664 -15.08987 -14.90361 -14.40441 -14.30933 -13.98766 -13.72744 -13.54862 -13.46583 -13.21892 -13.10194 -12.72129 -12.41102 -12.24029 -12.02104 -11.99705 -11.70331 -11.66107 -11.52817 -11.19939 -11.07797 -10.95301 -10.75288 -10.64880 -10.41139 -10.28136 -10.13875 -10.12268 -9.84688 -9.79449 -9.59753 -9.41706 -9.20832 -8.71474 -8.60083 -6.92734 -5.92453 -3.29427 0.33487 0.88708 2.60038 3.16122 3.31208 3.33960 3.50865 3.54172 3.70871 3.83180 4.07967 4.28041 4.39442 4.47795 4.52239 4.55185 4.64423 4.89347 4.94504 4.98815 5.03602 5.11272 5.29511 5.31396 5.33106 5.41105 5.46126 5.48563 5.57717 5.67952 5.73996 5.80209 5.81100 5.89539 5.99624 6.06560 6.14939 6.22080 6.26847 6.32227 6.37284 6.44994 6.54898 6.62578 6.67210 6.73144 6.79197 6.85962 7.06040 7.37284 7.72544 7.99584 8.27530 8.35670 8.96499 9.74500 10.12773 11.23503 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023389 B = 0.002428 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.835837 B =11529.688009 C =11839.188087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.255 4.255 7 H 0.085 0.915 8 C 0.024 3.976 9 N -0.909 5.909 10 Si 0.879 3.121 11 H -0.289 1.289 12 H -0.304 1.304 13 H -0.268 1.268 14 C 0.151 3.849 15 C -0.145 4.145 16 C 0.161 3.839 17 H 0.083 0.917 18 N -0.697 5.697 19 C 0.566 3.434 20 O -0.536 6.536 21 C 0.078 3.922 22 C -0.108 4.108 23 C -0.078 4.078 24 C -0.086 4.086 25 C -0.120 4.120 26 C -0.174 4.174 27 C -0.166 4.166 28 C 0.096 3.904 29 N -0.452 5.452 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.037 0.963 36 H 0.076 0.924 37 H 0.027 0.973 38 H 0.262 0.738 39 H 0.025 0.975 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.408 0.592 44 H 0.150 0.850 45 H 0.141 0.859 46 H 0.117 0.883 47 H 0.101 0.899 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.098 0.902 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.014 4.619 26.470 29.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.091 4.091 3 C -0.188 4.188 4 C 0.015 3.985 5 N -0.326 5.326 6 C -0.384 4.384 7 H 0.103 0.897 8 C -0.174 4.174 9 N -0.552 5.552 10 Si 0.709 3.291 11 H -0.217 1.217 12 H -0.232 1.232 13 H -0.193 1.193 14 C 0.025 3.975 15 C -0.185 4.185 16 C 0.057 3.943 17 H 0.102 0.898 18 N -0.348 5.348 19 C 0.350 3.650 20 O -0.413 6.413 21 C -0.060 4.060 22 C -0.128 4.128 23 C -0.104 4.104 24 C -0.088 4.088 25 C -0.139 4.139 26 C -0.211 4.211 27 C -0.203 4.203 28 C -0.064 4.064 29 N -0.163 5.163 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.245 0.755 44 H 0.168 0.832 45 H 0.159 0.841 46 H 0.135 0.865 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.117 0.883 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.616 4.235 25.451 28.295 hybrid contribution -1.158 -0.509 0.470 1.349 sum -12.774 3.726 25.921 29.137 Atomic orbital electron populations 1.21841 0.95073 1.01496 1.01431 1.21287 0.94662 0.97234 0.95934 1.21782 1.03038 0.93955 1.00016 1.21320 0.85064 0.96977 0.95187 1.44347 1.00547 1.69911 1.17818 1.18895 0.98956 1.35652 0.84872 0.89704 1.25286 0.97914 0.98616 0.95628 1.69822 1.43036 1.38956 1.03425 0.86990 0.82716 0.82476 0.76904 1.21673 1.23215 1.19293 1.20898 0.97317 0.94170 0.85155 1.22457 0.94417 1.02143 0.99473 1.21036 0.94133 0.96740 0.82344 0.89847 1.46152 1.63900 1.15142 1.09587 1.17863 0.78410 0.86012 0.82715 1.90782 1.50664 1.15430 1.84437 1.21319 0.99619 0.90453 0.94654 1.22144 0.96766 1.02068 0.91866 1.21417 0.96391 0.93675 0.98886 1.20346 0.98566 0.94583 0.95287 1.20980 1.04747 0.90415 0.97775 1.23112 0.97797 0.97636 1.02517 1.23086 0.95892 1.00113 1.01198 1.22675 0.95898 1.00270 0.87539 1.67600 1.08801 1.08460 1.31421 0.92946 0.92443 0.92997 0.90614 0.92622 0.94436 0.90604 0.95527 0.92837 0.95717 0.91547 0.92282 0.91277 0.75515 0.83241 0.84086 0.86453 0.88062 0.88005 0.88075 0.88312 0.82256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 8.31 37.16 0.31 -1.83 16 2 C -0.09 -1.55 0.56 -154.61 -0.09 -1.63 16 3 C -0.13 -2.23 7.82 37.16 0.29 -1.94 16 4 C 0.14 3.05 2.82 -3.93 -0.01 3.03 16 5 N -0.60 -14.12 2.20 -172.58 -0.38 -14.50 16 6 C -0.26 -7.02 10.03 -15.06 -0.15 -7.17 16 7 H 0.09 2.50 8.06 -52.48 -0.42 2.07 16 8 C 0.02 0.70 5.25 -17.43 -0.09 0.61 16 9 N -0.91 -27.72 13.97 55.49 0.78 -26.94 16 10 Si 0.88 22.41 24.36 -169.99 -4.14 18.27 16 11 H -0.29 -7.11 6.74 56.52 0.38 -6.73 16 12 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 13 H -0.27 -6.74 6.41 56.52 0.36 -6.38 16 14 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 15 C -0.14 -2.55 5.31 -26.61 -0.14 -2.69 16 16 C 0.16 2.72 1.57 -67.89 -0.11 2.61 16 17 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 18 N -0.70 -10.35 4.28 -54.60 -0.23 -10.59 16 19 C 0.57 8.66 7.78 -12.18 -0.09 8.56 16 20 O -0.54 -9.60 15.99 5.35 0.09 -9.52 16 21 C 0.08 0.99 6.75 -83.01 -0.56 0.43 16 22 C -0.11 -1.14 9.63 -39.05 -0.38 -1.52 16 23 C -0.08 -0.62 9.88 -39.31 -0.39 -1.01 16 24 C -0.09 -0.66 5.63 -104.36 -0.59 -1.25 16 25 C -0.12 -0.65 6.06 -91.77 -0.56 -1.20 16 26 C -0.17 -0.77 9.87 -26.69 -0.26 -1.04 16 27 C -0.17 -0.77 10.17 -26.69 -0.27 -1.05 16 28 C 0.10 0.87 10.46 -17.56 -0.18 0.68 16 29 N -0.45 -5.30 9.54 -9.80 -0.09 -5.39 16 30 H 0.05 0.71 7.36 -51.94 -0.38 0.33 16 31 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.46 5.97 -51.93 -0.31 1.15 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.04 0.53 6.58 -51.93 -0.34 0.19 16 36 H 0.08 1.79 4.63 -51.93 -0.24 1.55 16 37 H 0.03 0.59 6.93 -51.93 -0.36 0.23 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.07 1.23 6.34 -51.93 -0.33 0.90 16 43 H 0.41 5.60 5.99 -40.82 -0.24 5.36 16 44 H 0.15 1.52 7.64 -52.49 -0.40 1.12 16 45 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 46 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.43 6.20 -51.93 -0.32 0.11 16 48 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16 50 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.16 1.07 6.04 -52.48 -0.32 0.75 16 LS Contribution 391.90 15.07 5.91 5.91 Total: -1.00 -32.03 391.90 -9.27 -41.31 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.90 Total: 4.84 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -3.29 Total: -3.38 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.07 Total: -57.42 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.14 Total: 18.27 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.03 -9.27 -41.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941194708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.263 kcal (2) G-P(sol) polarization free energy of solvation -32.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds