Wall clock time and date at job start Wed Apr 1 2020 02:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.52268 * 2 1 4 4 C 1.52760 * 109.56806 * 240.04465 * 2 1 3 5 5 N 1.46926 * 109.00434 * 185.55696 * 4 2 1 6 6 C 1.36944 * 120.62524 * 233.57880 * 5 4 2 7 7 H 1.08006 * 119.99668 * 151.31927 * 6 5 4 8 8 C 1.38807 * 120.00333 * 331.32502 * 6 5 4 9 9 N 1.31617 * 120.00050 * 160.73351 * 8 6 5 10 10 Si 1.86804 * 119.99858 * 340.73940 * 8 6 5 11 11 H 1.48495 * 109.47308 * 95.16163 * 10 8 6 12 12 H 1.48498 * 109.46832 * 215.16270 * 10 8 6 13 13 H 1.48500 * 109.46907 * 335.16135 * 10 8 6 14 14 C 1.46923 * 118.74241 * 53.30762 * 5 4 2 15 15 C 1.53187 * 108.77603 * 306.64172 * 14 5 4 16 16 C 1.53042 * 109.31387 * 54.63563 * 15 14 5 17 17 H 1.08999 * 109.45995 * 58.65082 * 16 15 14 18 18 N 1.46498 * 109.46301 * 178.62855 * 16 15 14 19 19 C 1.34776 * 119.99748 * 274.99919 * 18 16 15 20 20 O 1.21514 * 119.99835 * 0.02562 * 19 18 16 21 21 C 1.48175 * 119.99786 * 179.97438 * 19 18 16 22 22 C 1.39309 * 119.72121 * 180.02562 * 21 19 18 23 23 C 1.38588 * 119.05701 * 179.97438 * 22 21 19 24 24 C 1.38630 * 118.48766 * 0.02562 * 23 22 21 25 25 C 1.50701 * 120.32112 * 179.97438 * 24 23 22 26 26 C 1.52999 * 117.49748 * 188.74549 * 25 24 23 27 27 C 1.53001 * 117.49358 * 120.08596 * 25 24 23 28 28 C 1.38553 * 119.35306 * 359.97438 * 24 23 22 29 29 N 1.31529 * 120.90520 * 359.74456 * 28 24 23 30 30 H 1.08989 * 109.47870 * 299.92380 * 1 2 3 31 31 H 1.09007 * 109.46654 * 59.92477 * 1 2 3 32 32 H 1.09001 * 109.46763 * 179.91401 * 1 2 3 33 33 H 1.09001 * 109.46895 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47218 * 300.07650 * 3 2 1 35 35 H 1.08999 * 109.47090 * 60.07709 * 3 2 1 36 36 H 1.08997 * 109.51160 * 65.67262 * 4 2 1 37 37 H 1.09007 * 109.42858 * 305.38652 * 4 2 1 38 38 H 0.97004 * 119.99787 * 179.97438 * 9 8 6 39 39 H 1.09003 * 109.58294 * 66.43079 * 14 5 4 40 40 H 1.09003 * 109.58490 * 186.71023 * 14 5 4 41 41 H 1.09003 * 109.49854 * 174.58496 * 15 14 5 42 42 H 1.09004 * 109.49981 * 294.65260 * 15 14 5 43 43 H 0.96998 * 120.00010 * 94.99511 * 18 16 15 44 44 H 1.08000 * 120.46943 * 359.97438 * 22 21 19 45 45 H 1.08000 * 120.75509 * 180.02562 * 23 22 21 46 46 H 1.09001 * 115.55238 * 334.41779 * 25 24 23 47 47 H 1.08999 * 117.49869 * 0.02562 * 26 25 24 48 48 H 1.08993 * 117.49910 * 145.02513 * 26 25 24 49 49 H 1.09008 * 117.49710 * 214.97776 * 27 25 24 50 50 H 1.08997 * 117.50123 * 359.97438 * 27 25 24 51 51 H 1.08004 * 119.54925 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0417 -0.7187 -1.2471 5 7 3.5047 -0.8291 -1.1693 6 6 4.2938 -0.3785 -2.1938 7 1 5.2949 -0.0278 -1.9903 8 6 3.8071 -0.3724 -3.4938 9 7 4.3777 0.3849 -4.4066 10 14 2.3421 -1.4389 -3.9476 11 1 1.0973 -0.6340 -3.8585 12 1 2.5075 -1.9428 -5.3346 13 1 2.2568 -2.5876 -3.0103 14 6 4.1053 -1.4266 0.0311 15 6 3.5708 -0.6949 1.2662 16 6 2.0407 -0.7230 1.2485 17 1 1.6966 -1.7572 1.2354 18 7 1.5263 -0.0525 2.4452 19 6 1.3969 -0.7379 3.5984 20 8 1.7073 -1.9118 3.6457 21 6 0.8771 -0.0596 4.8090 22 6 0.7462 -0.7734 5.9981 23 6 0.2591 -0.1252 7.1221 24 6 -0.0807 1.2147 7.0174 25 6 -0.6148 1.9598 8.2135 26 6 -1.1604 3.3702 7.9813 27 6 0.1770 3.1752 8.7000 28 6 0.0756 1.8621 5.8025 29 7 0.5454 1.2242 4.7526 30 1 -0.3634 0.5126 0.8905 31 1 -0.3633 0.5150 -0.8894 32 1 -0.3633 -1.0277 -0.0015 33 1 3.1313 1.4410 -0.0005 34 1 1.6773 1.9566 -0.8893 35 1 1.6796 1.9558 0.8907 36 1 1.7648 -0.1497 -2.1345 37 1 1.6022 -1.7150 -1.2974 38 1 4.0378 0.3888 -5.3151 39 1 3.8375 -2.4818 0.0870 40 1 5.1898 -1.3268 -0.0146 41 1 3.9333 -1.1896 2.1674 42 1 3.9163 0.3389 1.2546 43 1 1.2789 0.8846 2.4075 44 1 1.0204 -1.8170 6.0434 45 1 0.1469 -0.6520 8.0582 46 1 -1.1092 1.3467 8.9670 47 1 -1.1333 3.7590 6.9634 48 1 -2.0134 3.6851 8.5823 49 1 0.2033 3.3619 9.7736 50 1 1.0845 3.4355 8.1552 51 1 -0.1878 2.9061 5.7175 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941194708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:06:12 Heat of formation + Delta-G solvation = 28.861528 kcal Electronic energy + Delta-G solvation = -30527.825757 eV Core-core repulsion = 26620.686559 eV Total energy + Delta-G solvation = -3907.139199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.93386 -41.05845 -39.59704 -37.92972 -36.42631 -34.53090 -33.97181 -33.48773 -32.34227 -31.47169 -28.25800 -27.79412 -27.28733 -25.81401 -24.95959 -24.23663 -23.14125 -22.23720 -22.11711 -21.44276 -20.21919 -19.40029 -18.46706 -18.10666 -17.26985 -16.86067 -16.48770 -16.33650 -16.13112 -16.07468 -15.69691 -15.46633 -15.25735 -15.15579 -14.86349 -14.65287 -14.44062 -14.29064 -14.08921 -13.74517 -13.69847 -13.22969 -13.04824 -12.88473 -12.73731 -12.67492 -12.43980 -12.33454 -12.29856 -12.11121 -12.02068 -11.85531 -11.55226 -11.47212 -11.41725 -11.27758 -11.17812 -10.80904 -10.72334 -10.54526 -10.11894 -9.78565 -8.91935 -8.14915 -5.48016 -0.45190 0.20131 1.28894 1.41256 1.49637 1.63660 2.02861 2.41736 2.68815 3.04122 3.05994 3.10557 3.32185 3.52939 3.57407 3.73226 3.84757 3.87832 3.88629 3.92376 4.01394 4.13179 4.24932 4.28485 4.31084 4.33520 4.45049 4.54458 4.65017 4.68823 4.72191 4.79511 4.82853 4.86285 4.90943 4.95606 4.97945 5.02348 5.05280 5.07118 5.09730 5.18065 5.27653 5.28241 5.29177 5.31267 5.44846 5.55167 5.59088 5.88592 6.14393 6.39219 6.75325 6.91283 7.12227 7.62002 8.03625 9.04820 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.023389 B = 0.002428 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.835837 B =11529.688009 C =11839.188087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C -0.124 4.124 4 C 0.137 3.863 5 N -0.613 5.613 6 C -0.239 4.239 7 H 0.054 0.946 8 C -0.030 4.030 9 N -0.955 5.955 10 Si 0.937 3.063 11 H -0.274 1.274 12 H -0.312 1.312 13 H -0.263 1.263 14 C 0.148 3.852 15 C -0.132 4.132 16 C 0.171 3.829 17 H 0.071 0.929 18 N -0.690 5.690 19 C 0.566 3.434 20 O -0.569 6.569 21 C 0.049 3.951 22 C -0.112 4.112 23 C -0.074 4.074 24 C -0.073 4.073 25 C -0.128 4.128 26 C -0.171 4.171 27 C -0.164 4.164 28 C 0.088 3.912 29 N -0.467 5.467 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.030 0.970 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.415 0.585 44 H 0.147 0.853 45 H 0.173 0.827 46 H 0.134 0.866 47 H 0.102 0.898 48 H 0.115 0.885 49 H 0.114 0.886 50 H 0.091 0.909 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.631 5.265 29.855 33.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.084 4.084 3 C -0.182 4.182 4 C 0.011 3.989 5 N -0.337 5.337 6 C -0.369 4.369 7 H 0.072 0.928 8 C -0.225 4.225 9 N -0.601 5.601 10 Si 0.766 3.234 11 H -0.200 1.200 12 H -0.241 1.241 13 H -0.187 1.187 14 C 0.023 3.977 15 C -0.172 4.172 16 C 0.067 3.933 17 H 0.089 0.911 18 N -0.341 5.341 19 C 0.352 3.648 20 O -0.448 6.448 21 C -0.088 4.088 22 C -0.133 4.133 23 C -0.100 4.100 24 C -0.075 4.075 25 C -0.147 4.147 26 C -0.207 4.207 27 C -0.201 4.201 28 C -0.072 4.072 29 N -0.178 5.178 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.253 0.747 44 H 0.165 0.835 45 H 0.190 0.810 46 H 0.152 0.848 47 H 0.120 0.880 48 H 0.133 0.867 49 H 0.132 0.868 50 H 0.109 0.891 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.261 4.884 28.883 32.580 hybrid contribution -0.305 -0.633 -0.396 0.806 sum -14.566 4.252 28.487 32.276 Atomic orbital electron populations 1.21806 0.92805 1.02120 1.02642 1.21138 0.96389 0.96755 0.94095 1.21704 1.01347 0.93975 1.01138 1.21343 0.83825 0.97149 0.96565 1.44413 1.01271 1.70321 1.17681 1.18798 0.98160 1.33958 0.85986 0.92834 1.25834 1.01014 0.99936 0.95678 1.69941 1.45417 1.40991 1.03786 0.86036 0.80448 0.80960 0.75909 1.20030 1.24129 1.18713 1.21002 0.97181 0.94567 0.84993 1.22282 0.95188 1.01616 0.98136 1.20730 0.93332 0.96201 0.83068 0.91120 1.45946 1.63879 1.15295 1.08953 1.18266 0.77539 0.85672 0.83310 1.90755 1.52132 1.16873 1.85053 1.20962 1.02337 0.91320 0.94153 1.22234 0.96934 1.02086 0.92079 1.21756 0.95151 0.93910 0.99153 1.20648 0.96643 0.94554 0.95657 1.21074 1.05509 0.90885 0.97228 1.23222 0.98125 0.96534 1.02834 1.23141 0.95747 0.99221 1.01992 1.23106 0.95454 1.01186 0.87502 1.67513 1.09479 1.08047 1.32809 0.90913 0.92063 0.92721 0.93129 0.93470 0.91325 0.92549 0.95488 0.93017 0.95231 0.92000 0.91651 0.91405 0.74689 0.83488 0.81002 0.84838 0.87981 0.86719 0.86770 0.89052 0.80185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 8.31 71.98 0.60 -3.24 16 2 C -0.08 -2.75 0.56 -52.24 -0.03 -2.78 16 3 C -0.12 -4.13 7.82 71.98 0.56 -3.57 16 4 C 0.14 5.84 2.82 86.22 0.24 6.09 16 5 N -0.61 -29.02 2.20 -699.93 -1.54 -30.56 16 6 C -0.24 -13.55 10.03 84.03 0.84 -12.70 16 7 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 8 C -0.03 -1.75 5.25 84.86 0.45 -1.30 16 9 N -0.96 -60.07 13.97 21.65 0.30 -59.77 16 10 Si 0.94 47.04 24.36 68.60 1.67 48.71 16 11 H -0.27 -12.93 6.74 99.48 0.67 -12.26 16 12 H -0.31 -16.00 7.11 99.48 0.71 -15.29 16 13 H -0.26 -12.78 6.41 99.48 0.64 -12.14 16 14 C 0.15 6.03 6.52 86.36 0.56 6.59 16 15 C -0.13 -4.62 5.31 30.67 0.16 -4.45 16 16 C 0.17 5.63 1.57 45.02 0.07 5.70 16 17 H 0.07 2.56 7.58 -2.39 -0.02 2.54 16 18 N -0.69 -19.60 4.28 -444.96 -1.90 -21.51 16 19 C 0.57 16.89 7.78 86.88 0.68 17.56 16 20 O -0.57 -20.25 15.99 -3.76 -0.06 -20.31 16 21 C 0.05 1.20 6.75 41.91 0.28 1.48 16 22 C -0.11 -2.21 9.63 22.61 0.22 -2.00 16 23 C -0.07 -0.98 9.88 22.45 0.22 -0.76 16 24 C -0.07 -0.91 5.63 -19.70 -0.11 -1.02 16 25 C -0.13 -0.91 6.06 -11.54 -0.07 -0.98 16 26 C -0.17 -0.92 9.87 30.62 0.30 -0.61 16 27 C -0.16 -0.99 10.17 30.62 0.31 -0.68 16 28 C 0.09 1.36 10.46 84.81 0.89 2.25 16 29 N -0.47 -10.10 9.54 -184.91 -1.76 -11.87 16 30 H 0.07 1.77 7.36 -2.39 -0.02 1.75 16 31 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.05 1.93 5.97 -2.39 -0.01 1.92 16 34 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.82 6.58 -2.39 -0.02 1.81 16 36 H 0.06 2.64 4.63 -2.39 -0.01 2.63 16 37 H 0.03 1.16 6.93 -2.38 -0.02 1.15 16 38 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 2.53 7.93 -2.39 -0.02 2.51 16 41 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.07 2.39 6.34 -2.38 -0.02 2.38 16 43 H 0.41 10.60 5.99 -92.71 -0.56 10.05 16 44 H 0.15 2.88 7.64 -2.91 -0.02 2.86 16 45 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 46 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.10 0.53 6.20 -2.39 -0.01 0.52 16 48 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 49 H 0.11 0.41 8.14 -2.38 -0.02 0.39 16 50 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.18 1.89 6.04 -2.91 -0.02 1.88 16 Total: -1.00 -71.24 391.90 3.17 -68.07 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.29 Total: 21.66 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 6.18 Total: 5.58 kcal Atomic # 7 Polarization: -118.80 SS G_CDS: -4.91 Total: -123.71 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: -0.06 Total: -20.31 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 1.67 Total: 48.71 kcal Total: -71.24 3.17 -68.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941194708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.932 kcal (2) G-P(sol) polarization free energy of solvation -71.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds