Wall clock time and date at job start Wed Apr 1 2020 02:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38172 * 120.50052 * 2 1 4 4 N 1.31799 * 120.89116 * 179.97438 * 3 2 1 5 5 C 1.31828 * 122.05129 * 359.97438 * 4 3 2 6 6 C 1.38120 * 120.89608 * 359.73032 * 5 4 3 7 7 C 1.39799 * 120.49647 * 179.97438 * 2 1 3 8 8 C 1.48149 * 120.92537 * 0.02562 * 7 2 1 9 9 O 1.21517 * 119.99517 * 306.38822 * 8 7 2 10 10 N 1.34773 * 120.00323 * 126.38366 * 8 7 2 11 11 C 1.46924 * 120.63064 * 4.21482 * 10 8 7 12 12 C 1.53187 * 108.77632 * 233.62565 * 11 10 8 13 13 C 1.53039 * 109.31508 * 305.36351 * 12 11 10 14 14 C 1.53045 * 109.53590 * 61.36418 * 13 12 11 15 15 H 1.09002 * 109.49761 * 58.61721 * 14 13 12 16 16 C 1.52999 * 109.50000 * 178.68473 * 14 13 12 17 17 H 1.09004 * 109.86999 * 295.66734 * 16 14 13 18 18 C 1.54319 * 109.88117 * 56.68288 * 16 14 13 19 19 C 1.55159 * 102.94538 * 141.61280 * 18 16 14 20 20 C 1.54910 * 101.57600 * 324.50000 * 19 18 16 21 21 N 1.47020 * 109.88413 * 174.65439 * 16 14 13 22 22 C 1.36929 * 125.65000 * 61.60596 * 21 16 14 23 23 H 1.08000 * 120.00414 * 10.30079 * 22 21 16 24 24 C 1.38811 * 119.99679 * 190.30279 * 22 21 16 25 25 N 1.31614 * 120.00189 * 359.97438 * 24 22 21 26 26 Si 1.86808 * 119.99688 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47089 * 60.00040 * 26 24 22 28 28 H 1.48508 * 109.47013 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.46958 * 299.99614 * 26 24 22 30 30 C 1.46930 * 120.63065 * 184.23033 * 10 8 7 31 31 H 1.09002 * 109.47027 * 274.48558 * 1 2 3 32 32 H 1.08998 * 109.46831 * 34.48014 * 1 2 3 33 33 H 1.08990 * 109.47452 * 154.48053 * 1 2 3 34 34 H 1.07995 * 119.55421 * 359.97438 * 3 2 1 35 35 H 1.08001 * 119.54980 * 179.97438 * 5 4 3 36 36 H 1.08004 * 120.50148 * 180.29472 * 6 5 4 37 37 H 1.09007 * 109.58818 * 113.83811 * 11 10 8 38 38 H 1.09003 * 109.58409 * 353.41644 * 11 10 8 39 39 H 1.09005 * 109.49680 * 65.31958 * 12 11 10 40 40 H 1.08998 * 109.49903 * 185.37832 * 12 11 10 41 41 H 1.08995 * 109.45957 * 181.38242 * 13 12 11 42 42 H 1.08999 * 109.46322 * 301.34758 * 13 12 11 43 43 H 1.09009 * 110.72096 * 259.97609 * 18 16 14 44 44 H 1.09004 * 110.72148 * 23.24668 * 18 16 14 45 45 H 1.09001 * 111.00101 * 82.57128 * 19 18 16 46 46 H 1.08990 * 111.00772 * 206.38744 * 19 18 16 47 47 H 1.09004 * 110.36449 * 155.84900 * 20 19 18 48 48 H 1.08998 * 110.36813 * 278.05603 * 20 19 18 49 49 H 0.97006 * 119.99997 * 179.97438 * 25 24 22 50 50 H 1.08998 * 109.58377 * 6.59192 * 30 10 8 51 51 H 1.09001 * 109.70333 * 246.23031 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2083 1.1905 0.0000 4 7 3.5262 1.1995 0.0005 5 6 4.2334 0.0870 0.0015 6 6 3.6137 -1.1474 0.0077 7 6 2.2165 -1.2046 0.0005 8 6 1.5078 -2.5056 0.0006 9 8 0.6686 -2.7402 0.8475 10 7 1.7937 -3.4288 -0.9387 11 6 2.8692 -3.1975 -1.9127 12 6 2.3042 -3.3834 -3.3244 13 6 1.6470 -4.7615 -3.4293 14 6 0.4913 -4.8547 -2.4303 15 1 -0.2340 -4.0681 -2.6387 16 6 -0.1858 -6.2207 -2.5587 17 1 -0.6399 -6.3179 -3.5449 18 6 0.8519 -7.3429 -2.3456 19 6 0.0556 -8.4045 -1.5418 20 6 -0.8469 -7.5106 -0.6551 21 7 -1.2138 -6.3690 -1.5181 22 6 -2.3232 -5.5793 -1.3740 23 1 -2.5898 -4.8759 -2.1489 24 6 -3.1051 -5.6829 -0.2317 25 7 -2.7805 -6.5404 0.7125 26 14 -4.6189 -4.6061 -0.0354 27 1 -5.5673 -4.8783 -1.1453 28 1 -5.2761 -4.9078 1.2618 29 1 -4.2171 -3.1768 -0.0667 30 6 1.0357 -4.6855 -1.0084 31 1 -0.3633 0.0804 1.0245 32 1 -0.3633 0.8471 -0.5818 33 1 -0.3634 -0.9273 -0.4427 34 1 1.6692 2.1263 -0.0004 35 1 5.3121 0.1415 0.0015 36 1 4.1993 -2.0548 0.0133 37 1 3.6746 -3.9125 -1.7444 38 1 3.2500 -2.1822 -1.8023 39 1 1.5622 -2.6103 -3.5241 40 1 3.1121 -3.3088 -4.0524 41 1 1.2658 -4.9061 -4.4401 42 1 2.3836 -5.5331 -3.2053 43 1 1.1813 -7.7502 -3.3016 44 1 1.7010 -6.9783 -1.7675 45 1 -0.5435 -9.0284 -2.2051 46 1 0.7224 -9.0141 -0.9321 47 1 -1.7398 -8.0567 -0.3507 48 1 -0.2967 -7.1664 0.2206 49 1 -3.3267 -6.6125 1.5109 50 1 0.2069 -4.6519 -0.3014 51 1 1.6897 -5.5231 -0.7655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963290339.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:16 Heat of formation + Delta-G solvation = 26.565556 kcal Electronic energy + Delta-G solvation = -31935.868020 eV Core-core repulsion = 28028.629261 eV Total energy + Delta-G solvation = -3907.238759 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.95443 -39.54395 -38.12411 -36.44096 -33.64441 -33.26813 -32.40387 -31.93247 -30.95790 -29.24581 -27.66679 -26.72869 -25.78150 -24.52978 -23.86239 -22.89041 -22.23008 -21.19512 -20.18108 -19.49876 -18.38900 -17.59094 -16.83949 -16.60356 -16.10274 -15.59507 -15.22822 -14.84619 -14.79759 -14.45119 -14.21427 -14.04345 -13.86860 -13.81736 -13.55078 -13.16630 -13.00654 -12.85262 -12.74944 -12.25056 -12.15849 -11.94327 -11.72466 -11.67349 -11.52901 -11.29823 -11.00010 -10.87166 -10.77656 -10.65532 -10.20017 -10.18206 -10.06515 -9.88009 -9.81156 -9.76450 -9.58164 -9.51942 -9.31790 -9.09404 -8.53063 -8.33744 -6.75222 -5.65840 -3.01333 0.77615 0.88609 2.78656 3.11978 3.45048 3.50160 3.50556 3.59887 4.21889 4.34500 4.54376 4.61558 4.66227 4.80669 4.82513 4.98121 5.07054 5.20148 5.30776 5.36660 5.42926 5.47974 5.53627 5.58581 5.61396 5.65147 5.65992 5.68673 5.75130 5.85117 5.90641 5.94529 6.00646 6.06350 6.16384 6.18915 6.20551 6.33812 6.36960 6.44385 6.50814 6.59862 6.71053 6.82721 6.84900 6.96732 7.07996 7.58634 7.61156 7.65316 7.72337 7.87291 8.31729 8.35064 9.26392 9.88342 10.55114 11.44658 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011152 B = 0.004289 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.139142 B = 6527.175770 C = 8184.691784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.088 4.088 3 C 0.096 3.904 4 N -0.474 5.474 5 C 0.086 3.914 6 C -0.143 4.143 7 C -0.074 4.074 8 C 0.552 3.448 9 O -0.509 6.509 10 N -0.601 5.601 11 C 0.099 3.901 12 C -0.133 4.133 13 C -0.115 4.115 14 C -0.105 4.105 15 H 0.068 0.932 16 C 0.168 3.832 17 H 0.035 0.965 18 C -0.127 4.127 19 C -0.150 4.150 20 C 0.169 3.831 21 N -0.593 5.593 22 C -0.226 4.226 23 H 0.072 0.928 24 C 0.000 4.000 25 N -0.916 5.916 26 Si 0.906 3.094 27 H -0.287 1.287 28 H -0.290 1.290 29 H -0.285 1.285 30 C 0.127 3.873 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.160 0.840 35 H 0.160 0.840 36 H 0.140 0.860 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.079 0.921 48 H 0.021 0.979 49 H 0.252 0.748 50 H 0.115 0.885 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.184 8.358 -6.471 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.091 4.091 3 C -0.061 4.061 4 N -0.182 5.182 5 C -0.070 4.070 6 C -0.164 4.164 7 C -0.086 4.086 8 C 0.338 3.662 9 O -0.384 6.384 10 N -0.334 5.334 11 C -0.024 4.024 12 C -0.171 4.171 13 C -0.154 4.154 14 C -0.127 4.127 15 H 0.087 0.913 16 C 0.060 3.940 17 H 0.052 0.948 18 C -0.165 4.165 19 C -0.189 4.189 20 C 0.044 3.956 21 N -0.318 5.318 22 C -0.355 4.355 23 H 0.090 0.910 24 C -0.197 4.197 25 N -0.563 5.563 26 Si 0.736 3.264 27 H -0.213 1.213 28 H -0.216 1.216 29 H -0.211 1.211 30 C 0.006 3.994 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.158 0.842 37 H 0.087 0.913 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.039 0.961 49 H 0.063 0.937 50 H 0.133 0.867 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.958 9.016 -5.820 18.409 hybrid contribution -1.074 -0.191 0.093 1.094 sum 13.884 8.825 -5.727 17.420 Atomic orbital electron populations 1.20823 0.89230 1.03702 1.03585 1.21040 0.98169 0.92504 0.97374 1.22650 0.89744 0.97262 0.96446 1.67533 1.08237 1.31726 1.10745 1.22661 1.00377 0.87233 0.96763 1.22313 0.93636 1.00244 1.00158 1.20401 0.94111 0.94244 0.99809 1.18205 0.82691 0.83124 0.82182 1.90897 1.32394 1.78584 1.36528 1.48160 1.35299 1.19291 1.30638 1.21945 0.89710 1.01875 0.88906 1.21905 1.00521 0.98942 0.95742 1.21627 0.98077 0.95871 0.99792 1.21971 0.96120 1.01131 0.93490 0.91326 1.20892 0.88906 0.90782 0.93443 0.94756 1.22655 0.97818 0.96765 0.99272 1.23021 0.98894 0.97576 0.99388 1.21567 0.96602 0.87023 0.90401 1.44578 1.22102 1.33665 1.31410 1.18833 1.00066 1.15133 1.01419 0.91037 1.24761 0.99525 0.99285 0.96080 1.69891 1.39783 1.37643 1.08940 0.86299 0.82750 0.80419 0.76896 1.21329 1.21626 1.21145 1.21783 0.96332 0.82122 0.99132 0.89844 0.90967 0.90539 0.82234 0.82316 0.84214 0.91335 0.89942 0.91769 0.91201 0.91995 0.91849 0.92541 0.91826 0.92450 0.92616 0.90322 0.96146 0.93728 0.86663 0.92092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.34 36.01 0.34 -1.21 16 2 C -0.09 -1.16 5.93 -104.06 -0.62 -1.77 16 3 C 0.10 1.10 10.88 -17.59 -0.19 0.91 16 4 N -0.47 -5.56 10.33 -13.31 -0.14 -5.70 16 5 C 0.09 0.86 11.17 -17.60 -0.20 0.67 16 6 C -0.14 -1.56 7.55 -39.03 -0.29 -1.85 16 7 C -0.07 -1.04 4.91 -104.65 -0.51 -1.55 16 8 C 0.55 9.63 6.24 -12.19 -0.08 9.55 16 9 O -0.51 -11.35 15.49 5.35 0.08 -11.27 16 10 N -0.60 -9.48 2.97 -173.76 -0.52 -9.99 16 11 C 0.10 1.13 5.58 -3.71 -0.02 1.10 16 12 C -0.13 -1.48 6.08 -26.61 -0.16 -1.64 16 13 C -0.12 -1.49 4.85 -26.69 -0.13 -1.62 16 14 C -0.11 -1.82 2.10 -90.50 -0.19 -2.01 16 15 H 0.07 1.36 8.12 -51.93 -0.42 0.94 16 16 C 0.17 3.24 2.98 -66.96 -0.20 3.04 16 17 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.13 -2.08 5.16 -24.90 -0.13 -2.21 16 19 C -0.15 -2.76 7.09 -24.58 -0.17 -2.93 16 20 C 0.17 3.99 5.52 -2.35 -0.01 3.98 16 21 N -0.59 -14.38 2.30 -162.32 -0.37 -14.76 16 22 C -0.23 -6.15 9.92 -15.06 -0.15 -6.30 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 24 C 0.00 0.01 5.48 -17.43 -0.10 -0.08 16 25 N -0.92 -26.90 10.43 55.49 0.58 -26.32 16 26 Si 0.91 22.63 29.55 -169.99 -5.02 17.60 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 29 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 30 C 0.13 2.35 5.25 -3.71 -0.02 2.33 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.08 1.24 6.71 -51.93 -0.35 0.89 16 34 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 36 H 0.14 1.24 7.41 -52.48 -0.39 0.85 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.84 4.72 -51.93 -0.24 0.59 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.76 6.88 -51.93 -0.36 0.40 16 43 H 0.06 0.80 8.14 -51.92 -0.42 0.37 16 44 H 0.06 0.99 5.45 -51.93 -0.28 0.71 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.08 2.11 6.62 -51.93 -0.34 1.77 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 50 H 0.12 2.80 6.59 -51.93 -0.34 2.46 16 51 H 0.06 1.09 6.13 -51.93 -0.32 0.77 16 LS Contribution 388.86 15.07 5.86 5.86 Total: -1.00 -32.50 388.86 -10.45 -42.96 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -8.09 Total: 3.22 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -2.84 Total: -1.60 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.45 Total: -56.77 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.50 -10.45 -42.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963290339.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.521 kcal (2) G-P(sol) polarization free energy of solvation -32.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds