Wall clock time and date at job start Wed Apr 1 2020 02:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.46866 * 2 1 4 4 C 1.38604 * 119.54940 * 124.73175 * 3 2 1 5 5 C 1.38585 * 119.34819 * 179.75584 * 4 3 2 6 6 C 1.38627 * 118.48955 * 0.50186 * 5 4 3 7 7 C 1.39268 * 119.06420 * 359.73962 * 6 5 4 8 8 C 1.48163 * 119.72602 * 179.97438 * 7 6 5 9 9 O 1.21516 * 119.99717 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00215 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99967 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.67169 * 35.00318 * 11 10 8 13 13 C 1.53326 * 109.67722 * 274.49468 * 11 10 8 14 14 C 1.52830 * 108.09618 * 176.14916 * 13 11 10 15 15 C 1.50735 * 111.74226 * 58.91658 * 14 13 11 16 16 H 1.09007 * 109.26499 * 186.23906 * 15 14 13 17 17 C 1.53902 * 113.02629 * 65.12964 * 15 14 13 18 18 N 1.47824 * 104.05875 * 198.52441 * 17 15 14 19 19 C 1.36936 * 125.64216 * 203.39832 * 18 17 15 20 20 H 1.07997 * 119.99412 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00300 * 359.94113 * 19 18 17 22 22 N 1.31612 * 119.99889 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99656 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47244 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46909 * 120.00199 * 23 21 19 26 26 H 1.48499 * 109.46708 * 239.99912 * 23 21 19 27 27 C 1.47172 * 108.70279 * 23.34745 * 18 17 15 28 28 C 1.53997 * 113.94138 * 308.69039 * 15 14 13 29 29 H 1.09000 * 112.20356 * 280.65459 * 28 15 14 30 30 C 1.52589 * 109.67581 * 155.50640 * 11 10 8 31 31 N 1.31493 * 119.55012 * 304.99951 * 3 2 1 32 32 H 1.09001 * 109.46801 * 60.00064 * 1 2 3 33 33 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 34 34 H 1.09000 * 109.47050 * 299.99952 * 1 2 3 35 35 H 1.08993 * 109.46955 * 120.00219 * 2 1 3 36 36 H 1.09000 * 109.47050 * 240.00048 * 2 1 3 37 37 H 1.07998 * 120.32418 * 359.97438 * 4 3 2 38 38 H 1.07996 * 120.75218 * 180.24416 * 5 4 3 39 39 H 1.08004 * 120.47133 * 179.71254 * 6 5 4 40 40 H 0.96999 * 119.99956 * 359.97438 * 10 8 7 41 41 H 1.08998 * 109.74294 * 295.79401 * 13 11 10 42 42 H 1.09000 * 109.74133 * 56.50060 * 13 11 10 43 43 H 1.08997 * 109.02888 * 179.49973 * 14 13 11 44 44 H 1.09003 * 109.02491 * 298.40950 * 14 13 11 45 45 H 1.08999 * 110.50772 * 317.16499 * 17 15 14 46 46 H 1.08998 * 110.51128 * 79.87881 * 17 15 14 47 47 H 0.97007 * 119.99916 * 180.02562 * 22 21 19 48 48 H 1.08996 * 109.96194 * 241.58413 * 27 18 17 49 49 H 1.08999 * 109.95867 * 120.33588 * 27 18 17 50 50 H 1.08997 * 109.16323 * 302.49021 * 30 11 10 51 51 H 1.09000 * 109.16193 * 61.67854 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9078 1.8363 0.9909 5 6 3.3711 3.1425 0.9840 6 6 2.9300 3.9952 -0.0160 7 6 2.0457 3.5110 -0.9768 8 6 1.5645 4.4098 -2.0518 9 8 1.9417 5.5642 -2.0927 10 7 0.7083 3.9472 -2.9842 11 6 0.2320 4.8362 -4.0468 12 1 1.0262 5.5263 -4.3313 13 6 -0.9856 5.6259 -3.5521 14 6 -1.3924 6.6081 -4.6500 15 6 -1.7284 5.8990 -5.9371 16 1 -1.9040 6.6376 -6.7194 17 6 -2.9715 4.9990 -5.8218 18 7 -2.8594 4.0823 -6.9760 19 6 -3.8980 3.4151 -7.5689 20 1 -3.7116 2.7654 -8.4112 21 6 -5.1900 3.5733 -7.0868 22 7 -5.4171 4.3650 -6.0602 23 14 -6.6065 2.6625 -7.8953 24 1 -6.0899 1.8424 -9.0203 25 1 -7.2598 1.7777 -6.8975 26 1 -7.5958 3.6430 -8.4102 27 6 -1.4472 4.0065 -7.3831 28 6 -0.6450 4.9107 -6.4073 29 1 0.1873 5.4148 -6.8983 30 6 -0.1887 4.0094 -5.2583 31 7 1.6299 2.2509 -0.9370 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5138 0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.8934 -0.5138 -0.8900 37 1 3.2286 1.1480 1.7588 38 1 4.0569 3.4892 1.7428 39 1 3.2669 5.0208 -0.0492 40 1 0.4074 3.0256 -2.9517 41 1 -1.8092 4.9422 -3.3464 42 1 -0.7259 6.1736 -2.6461 43 1 -2.2637 7.1722 -4.3173 44 1 -0.5695 7.2996 -4.8309 45 1 -2.9525 4.4396 -4.8865 46 1 -3.8818 5.5941 -5.8936 47 1 -6.3200 4.4752 -5.7231 48 1 -1.3344 4.3695 -8.4046 49 1 -1.0942 2.9777 -7.3123 50 1 0.6559 3.4056 -5.5901 51 1 -1.0089 3.3501 -4.9741 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979798024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:38 Heat of formation + Delta-G solvation = 8.296370 kcal Electronic energy + Delta-G solvation = -30334.272682 eV Core-core repulsion = 26426.241712 eV Total energy + Delta-G solvation = -3908.030971 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.93018 -39.76811 -38.59238 -35.48935 -34.47569 -33.60982 -32.72119 -31.86329 -30.46512 -30.07808 -28.74053 -26.19124 -25.23317 -24.86413 -24.41573 -22.14189 -21.95206 -21.33003 -20.66768 -19.71994 -18.58608 -17.60123 -16.83033 -16.77352 -16.25206 -15.73684 -15.35527 -15.23919 -14.93575 -14.56453 -14.48463 -14.12366 -13.91142 -13.78274 -13.53939 -13.32142 -13.25011 -12.60215 -12.35716 -12.35356 -12.22704 -11.96475 -11.87435 -11.72958 -11.38106 -11.28430 -11.08770 -10.98491 -10.84631 -10.58535 -10.49468 -10.36451 -10.24445 -9.98667 -9.82808 -9.70602 -9.66654 -9.46980 -9.31752 -9.28076 -8.80775 -8.58050 -6.76396 -5.61463 -3.01608 0.40248 0.89263 2.63575 3.07988 3.41500 3.47132 3.49499 3.63442 3.79005 4.26176 4.51820 4.53301 4.64120 4.74875 4.93691 5.01177 5.06095 5.08873 5.11284 5.16720 5.34465 5.48357 5.50741 5.52640 5.60958 5.64578 5.66936 5.69279 5.75668 5.82790 5.84276 5.90715 5.93936 5.97419 6.06639 6.13345 6.27972 6.35905 6.40844 6.50672 6.56509 6.59697 6.66841 6.75398 6.80075 6.94328 7.08341 7.38941 7.61495 7.68029 7.69215 7.92443 8.19841 8.39881 9.26477 9.87731 10.53981 11.42925 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012974 B = 0.002711 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.668752 B =10325.653008 C =11717.146517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.072 4.072 3 C 0.130 3.870 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.120 4.120 7 C 0.088 3.912 8 C 0.569 3.431 9 O -0.537 6.537 10 N -0.700 5.700 11 C 0.146 3.854 12 H 0.086 0.914 13 C -0.125 4.125 14 C -0.095 4.095 15 C -0.114 4.114 16 H 0.063 0.937 17 C 0.165 3.835 18 N -0.606 5.606 19 C -0.219 4.219 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.911 3.089 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.138 3.862 28 C -0.089 4.089 29 H 0.075 0.925 30 C -0.113 4.113 31 N -0.454 5.454 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.410 0.590 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.015 0.985 46 H 0.100 0.900 47 H 0.250 0.750 48 H 0.019 0.981 49 H 0.023 0.977 50 H 0.059 0.941 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.882 -4.305 14.865 23.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.010 4.010 4 C -0.172 4.172 5 C -0.105 4.105 6 C -0.141 4.141 7 C -0.051 4.051 8 C 0.353 3.647 9 O -0.413 6.413 10 N -0.349 5.349 11 C 0.042 3.958 12 H 0.104 0.896 13 C -0.163 4.163 14 C -0.133 4.133 15 C -0.134 4.134 16 H 0.082 0.918 17 C 0.040 3.960 18 N -0.332 5.332 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.208 4.208 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.218 1.218 27 C 0.012 3.988 28 C -0.108 4.108 29 H 0.093 0.907 30 C -0.151 4.151 31 N -0.166 5.166 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.245 0.755 41 H 0.091 0.909 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.033 0.967 46 H 0.118 0.882 47 H 0.061 0.939 48 H 0.037 0.963 49 H 0.041 0.959 50 H 0.077 0.923 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 17.320 -3.781 14.144 22.679 hybrid contribution -0.261 -0.692 0.354 0.820 sum 17.059 -4.474 14.498 22.830 Atomic orbital electron populations 1.21700 0.93686 1.02075 1.02974 1.20517 0.97379 0.89861 1.03274 1.21338 0.93283 0.96200 0.90216 1.22209 0.98274 0.96983 0.99751 1.21615 0.98089 0.93214 0.97608 1.22125 0.96352 1.01841 0.93785 1.21232 0.96589 0.91063 0.96204 1.17854 0.79161 0.86340 0.81296 1.90777 1.58476 1.17364 1.74730 1.46009 1.45365 1.15963 1.27601 1.21102 0.96507 0.91851 0.86338 0.89590 1.21936 0.97432 0.98693 0.98273 1.20768 1.00620 0.97384 0.94566 1.21766 0.97804 0.97574 0.96240 0.91824 1.21793 0.94917 0.90499 0.88769 1.44624 1.00848 1.52629 1.35102 1.19115 0.85594 1.19718 1.10359 0.90608 1.24766 0.97314 1.00323 0.98367 1.69838 1.19439 1.41046 1.26668 0.86038 0.82538 0.78825 0.78352 1.20613 1.21850 1.21828 1.21601 0.86094 0.95985 0.95103 1.22044 0.97057 0.96181 0.95522 0.90693 1.21754 1.01198 0.98269 0.93915 1.67332 1.22712 1.02673 1.23920 0.91224 0.92102 0.92895 0.90282 0.89719 0.84361 0.84077 0.83443 0.75454 0.90873 0.92215 0.91730 0.92839 0.96681 0.88224 0.93910 0.96284 0.95946 0.92264 0.90405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.77 37.16 0.36 -0.83 16 2 C -0.07 -0.52 6.33 -27.88 -0.18 -0.69 16 3 C 0.13 1.21 6.18 -82.60 -0.51 0.70 16 4 C -0.15 -1.12 9.72 -39.32 -0.38 -1.50 16 5 C -0.08 -0.60 10.17 -39.31 -0.40 -1.00 16 6 C -0.12 -1.24 9.63 -39.06 -0.38 -1.62 16 7 C 0.09 1.10 6.75 -83.01 -0.56 0.54 16 8 C 0.57 8.34 7.79 -12.18 -0.09 8.24 16 9 O -0.54 -9.13 15.99 5.35 0.09 -9.05 16 10 N -0.70 -9.86 5.08 -54.69 -0.28 -10.14 16 11 C 0.15 2.20 2.43 -67.97 -0.16 2.03 16 12 H 0.09 1.35 7.59 -51.93 -0.39 0.96 16 13 C -0.12 -2.01 5.40 -26.65 -0.14 -2.15 16 14 C -0.09 -1.55 5.37 -27.95 -0.15 -1.70 16 15 C -0.11 -2.16 2.81 -90.76 -0.26 -2.41 16 16 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 17 C 0.16 3.93 4.79 -2.85 -0.01 3.91 16 18 N -0.61 -15.42 3.41 -169.62 -0.58 -16.00 16 19 C -0.22 -6.12 10.28 -15.06 -0.15 -6.28 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 22 N -0.92 -26.84 10.11 55.49 0.56 -26.28 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.14 2.88 6.54 -2.43 -0.02 2.87 16 28 C -0.09 -1.54 3.61 -88.86 -0.32 -1.86 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 30 C -0.11 -1.79 4.10 -26.94 -0.11 -1.90 16 31 N -0.45 -5.31 9.05 -6.06 -0.05 -5.36 16 32 H 0.07 0.69 7.94 -51.93 -0.41 0.28 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.38 7.87 -51.93 -0.41 -0.03 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.14 0.61 7.95 -52.49 -0.42 0.19 16 38 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.15 1.45 7.64 -52.48 -0.40 1.05 16 40 H 0.41 5.43 7.93 -40.82 -0.32 5.10 16 41 H 0.07 1.29 6.80 -51.93 -0.35 0.93 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.02 0.38 6.15 -51.93 -0.32 0.06 16 46 H 0.10 2.73 5.96 -51.93 -0.31 2.42 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.02 0.46 7.74 -51.93 -0.40 0.06 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 51 H 0.08 1.41 7.16 -51.93 -0.37 1.04 16 LS Contribution 398.01 15.07 6.00 6.00 Total: -1.00 -31.96 398.01 -11.16 -43.12 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -8.31 Total: 4.65 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.56 Total: -4.10 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.35 Total: -57.79 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.96 -11.16 -43.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979798024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.419 kcal (2) G-P(sol) polarization free energy of solvation -31.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds