Wall clock time and date at job start Wed Apr 1 2020 02:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38145 * 120.49772 * 2 1 4 4 N 1.31820 * 120.89808 * 180.28781 * 3 2 1 5 5 C 1.31811 * 122.04729 * 359.73846 * 4 3 2 6 6 C 1.38156 * 120.89226 * 0.02562 * 5 4 3 7 7 C 1.50707 * 120.49489 * 179.97438 * 6 5 4 8 8 C 1.39812 * 119.00720 * 359.97363 * 6 5 4 9 9 C 1.48150 * 120.92587 * 179.97438 * 8 6 5 10 10 O 1.21517 * 119.99707 * 90.00138 * 9 8 6 11 11 N 1.34771 * 120.00236 * 270.00464 * 9 8 6 12 12 C 1.46503 * 120.00339 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.70123 * 35.59546 * 12 11 9 14 14 C 1.53292 * 109.71154 * 275.00439 * 12 11 9 15 15 C 1.52626 * 108.49810 * 176.52292 * 14 12 11 16 16 C 1.52986 * 110.92287 * 62.22148 * 15 14 12 17 17 H 1.08997 * 112.43167 * 73.36206 * 16 15 14 18 18 C 1.55840 * 106.37516 * 198.08458 * 16 15 14 19 19 N 1.47616 * 104.47445 * 77.06791 * 18 16 15 20 20 C 1.36932 * 125.72785 * 204.86363 * 19 18 16 21 21 H 1.08001 * 120.00120 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99961 * 359.97438 * 20 19 18 23 23 N 1.31611 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99751 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47459 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46771 * 120.00210 * 24 22 20 27 27 H 1.48494 * 109.47356 * 239.99888 * 24 22 20 28 28 C 1.47435 * 108.54828 * 24.86177 * 19 18 16 29 29 C 1.53377 * 106.51090 * 359.33352 * 28 19 18 30 30 H 1.08997 * 108.14475 * 91.62014 * 29 28 19 31 31 C 1.50892 * 113.08127 * 212.46257 * 29 28 19 32 32 H 1.08997 * 109.47335 * 270.19670 * 1 2 3 33 33 H 1.09002 * 109.47029 * 30.20511 * 1 2 3 34 34 H 1.09006 * 109.46658 * 150.20540 * 1 2 3 35 35 H 1.08004 * 119.55639 * 0.02806 * 3 2 1 36 36 H 1.07994 * 119.55615 * 180.02562 * 5 4 3 37 37 H 1.09004 * 109.46878 * 270.02336 * 7 6 5 38 38 H 1.09002 * 109.47044 * 30.01796 * 7 6 5 39 39 H 1.08994 * 109.47239 * 150.02078 * 7 6 5 40 40 H 0.97002 * 120.00272 * 0.02562 * 11 9 8 41 41 H 1.08997 * 109.63845 * 56.82101 * 14 12 11 42 42 H 1.09003 * 109.63224 * 296.21969 * 14 12 11 43 43 H 1.08998 * 109.19064 * 301.84882 * 15 14 12 44 44 H 1.08997 * 109.15343 * 182.56499 * 15 14 12 45 45 H 1.09003 * 110.43716 * 195.81900 * 18 16 15 46 46 H 1.09000 * 110.43225 * 318.32206 * 18 16 15 47 47 H 0.97009 * 119.99596 * 179.97438 * 23 22 20 48 48 H 1.09001 * 110.04887 * 240.06914 * 28 19 18 49 49 H 1.09000 * 110.04444 * 118.59529 * 28 19 18 50 50 H 1.08998 * 109.06079 * 305.33680 * 31 29 28 51 51 H 1.08996 * 109.00101 * 186.36946 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1903 0.0000 4 7 3.5263 1.1995 -0.0057 5 6 4.2335 0.0872 -0.0065 6 6 3.6136 -1.1475 -0.0019 7 6 4.4310 -2.4136 -0.0034 8 6 2.2166 -1.2047 0.0043 9 6 1.5080 -2.5057 0.0088 10 8 1.2219 -3.0380 1.0631 11 7 1.1806 -3.0989 -1.1562 12 6 0.4803 -4.3857 -1.1518 13 1 -0.2163 -4.4220 -0.3141 14 6 1.4964 -5.5269 -1.0292 15 6 0.7344 -6.8462 -0.9397 16 6 -0.0812 -7.0933 -2.2103 17 1 0.5442 -7.3722 -3.0583 18 6 -1.1469 -8.1703 -1.8457 19 7 -2.1740 -7.4308 -1.0859 20 6 -3.0332 -7.9718 -0.1672 21 1 -3.7513 -7.3421 0.3370 22 6 -2.9814 -9.3298 0.1160 23 7 -2.1067 -10.0973 -0.4989 24 14 -4.1531 -10.0677 1.3698 25 1 -5.0314 -9.0012 1.9143 26 1 -4.9863 -11.1087 0.7159 27 1 -3.3736 -10.6800 2.4754 28 6 -2.1194 -6.0117 -1.4822 29 6 -0.9945 -5.8914 -2.5179 30 1 -1.4298 -6.0219 -3.5086 31 6 -0.2814 -4.5626 -2.4649 32 1 -0.3634 0.0035 1.0276 33 1 -0.3633 0.8882 -0.5170 34 1 -0.3633 -0.8919 -0.5107 35 1 1.6690 2.1262 0.0005 36 1 5.3120 0.1417 -0.0108 37 1 4.6239 -2.7202 -1.0315 38 1 5.3778 -2.2354 0.5064 39 1 3.8825 -3.2008 0.5137 40 1 1.4093 -2.6742 -1.9978 41 1 2.0959 -5.3885 -0.1295 42 1 2.1437 -5.5366 -1.9062 43 1 0.0616 -6.8140 -0.0828 44 1 1.4454 -7.6616 -0.8063 45 1 -1.5783 -8.6003 -2.7498 46 1 -0.7035 -8.9501 -1.2265 47 1 -2.0703 -11.0462 -0.3006 48 1 -1.8971 -5.3899 -0.6151 49 1 -3.0688 -5.7107 -1.9250 50 1 -1.0139 -3.7614 -2.5623 51 1 0.4224 -4.5042 -3.2952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980138310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:22 Heat of formation + Delta-G solvation = 9.116641 kcal Electronic energy + Delta-G solvation = -30838.508885 eV Core-core repulsion = 26930.513484 eV Total energy + Delta-G solvation = -3907.995401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.12644 -39.86096 -38.68007 -35.57955 -34.08466 -34.01644 -33.24676 -31.65077 -30.76595 -29.05991 -28.07508 -27.59404 -26.08983 -25.12750 -24.11750 -22.23761 -21.62411 -21.59774 -20.68172 -19.89480 -18.72568 -17.72545 -17.32151 -16.79080 -16.52721 -15.76136 -14.87074 -14.79974 -14.77671 -14.69566 -14.32214 -13.95503 -13.78591 -13.67903 -13.64008 -13.58256 -13.38443 -12.88743 -12.78822 -12.61682 -12.48347 -12.23214 -12.08381 -11.81198 -11.75426 -11.53000 -11.13352 -11.04107 -10.91454 -10.64240 -10.51126 -10.47904 -9.99586 -9.92324 -9.83421 -9.72195 -9.64949 -9.43352 -9.38821 -9.15028 -8.99384 -8.62227 -6.79060 -5.62657 -3.03611 0.67231 0.70489 2.37922 2.94601 3.34972 3.41589 3.47493 3.49609 4.04349 4.32743 4.36503 4.38580 4.51634 4.61080 4.82472 4.85489 4.94252 5.04014 5.22949 5.26291 5.28240 5.28829 5.30808 5.44908 5.46826 5.55803 5.58552 5.61177 5.66785 5.74759 5.76385 5.83357 5.83815 5.85720 5.96733 6.07746 6.17181 6.26221 6.27838 6.40194 6.43826 6.48936 6.63584 6.69627 6.85478 6.98221 7.13928 7.33335 7.50953 7.57991 7.65864 7.89010 8.02322 8.39189 9.25050 9.85783 10.51283 11.41090 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.002547 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.026375 B =10992.492681 C =11278.608822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.098 4.098 3 C 0.091 3.909 4 N -0.470 5.470 5 C 0.091 3.909 6 C -0.098 4.098 7 C -0.119 4.119 8 C -0.083 4.083 9 C 0.564 3.436 10 O -0.519 6.519 11 N -0.715 5.715 12 C 0.143 3.857 13 H 0.097 0.903 14 C -0.123 4.123 15 C -0.102 4.102 16 C -0.114 4.114 17 H 0.071 0.929 18 C 0.156 3.844 19 N -0.602 5.602 20 C -0.218 4.218 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C 0.139 3.861 29 C -0.091 4.091 30 H 0.067 0.933 31 C -0.106 4.106 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.160 0.840 36 H 0.160 0.840 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.398 0.602 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.057 0.943 45 H 0.008 0.992 46 H 0.110 0.890 47 H 0.251 0.749 48 H 0.024 0.976 49 H 0.019 0.981 50 H 0.063 0.937 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.410 19.840 -4.975 23.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.101 4.101 3 C -0.066 4.066 4 N -0.177 5.177 5 C -0.066 4.066 6 C -0.101 4.101 7 C -0.177 4.177 8 C -0.094 4.094 9 C 0.349 3.651 10 O -0.394 6.394 11 N -0.365 5.365 12 C 0.040 3.960 13 H 0.115 0.885 14 C -0.161 4.161 15 C -0.140 4.140 16 C -0.133 4.133 17 H 0.090 0.910 18 C 0.031 3.969 19 N -0.327 5.327 20 C -0.347 4.347 21 H 0.094 0.906 22 C -0.207 4.207 23 N -0.571 5.571 24 Si 0.743 3.257 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.218 1.218 28 C 0.013 3.987 29 C -0.110 4.110 30 H 0.085 0.915 31 C -0.144 4.144 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.177 0.823 36 H 0.177 0.823 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.231 0.769 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.026 0.974 46 H 0.127 0.873 47 H 0.061 0.939 48 H 0.042 0.958 49 H 0.037 0.963 50 H 0.081 0.919 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.540 20.039 -4.102 23.993 hybrid contribution -0.980 -0.956 0.148 1.377 sum 11.560 19.084 -3.954 22.660 Atomic orbital electron populations 1.20836 0.89533 1.03600 1.03583 1.20998 0.97774 0.92636 0.98666 1.22619 0.89777 0.97215 0.97003 1.67539 1.08259 1.31495 1.10454 1.22621 1.00363 0.86632 0.97020 1.20990 0.92671 0.97711 0.98686 1.20843 0.99679 0.93947 1.03181 1.20224 0.93711 0.93873 1.01599 1.18102 0.78658 0.83839 0.84540 1.90871 1.53079 1.64528 1.30908 1.46176 1.59380 1.23089 1.07861 1.21191 0.94049 0.80893 0.99882 0.88538 1.21895 0.97670 0.95395 1.01151 1.21366 0.98493 0.94705 0.99408 1.22590 0.97050 0.97189 0.96493 0.91020 1.22237 0.86906 0.92831 0.94910 1.44592 1.39860 1.01882 1.46415 1.19120 1.10388 0.91726 1.13433 0.90557 1.24756 0.99607 0.96089 1.00279 1.69790 1.37504 1.04742 1.45078 0.86028 0.79997 0.78973 0.80710 1.20573 1.21852 1.21775 1.21242 0.94654 0.88312 0.94489 1.21239 0.96606 0.93255 0.99924 0.91497 1.21170 0.98898 0.98361 0.95970 0.90016 0.90404 0.91006 0.82252 0.82268 0.90214 0.90416 0.90722 0.76853 0.92239 0.92420 0.90317 0.92437 0.97433 0.87287 0.93866 0.95847 0.96293 0.91880 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 9.67 36.01 0.35 -0.63 16 2 C -0.10 -0.95 5.93 -104.06 -0.62 -1.57 16 3 C 0.09 0.82 10.86 -17.59 -0.19 0.63 16 4 N -0.47 -4.78 10.34 -13.30 -0.14 -4.92 16 5 C 0.09 0.82 10.86 -17.59 -0.19 0.63 16 6 C -0.10 -0.95 5.93 -104.06 -0.62 -1.56 16 7 C -0.12 -0.97 9.67 36.01 0.35 -0.62 16 8 C -0.08 -0.91 5.67 -104.65 -0.59 -1.51 16 9 C 0.56 7.32 4.48 -12.19 -0.05 7.27 16 10 O -0.52 -9.08 16.78 5.35 0.09 -8.99 16 11 N -0.72 -7.89 5.10 -54.59 -0.28 -8.17 16 12 C 0.14 1.94 2.31 -67.86 -0.16 1.78 16 13 H 0.10 1.64 6.22 -51.93 -0.32 1.32 16 14 C -0.12 -1.75 5.52 -26.77 -0.15 -1.89 16 15 C -0.10 -1.79 4.81 -26.93 -0.13 -1.92 16 16 C -0.11 -2.03 3.72 -88.56 -0.33 -2.36 16 17 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 18 C 0.16 3.69 5.17 -1.91 -0.01 3.68 16 19 N -0.60 -15.15 2.93 -169.58 -0.50 -15.64 16 20 C -0.22 -6.08 10.28 -15.06 -0.15 -6.24 16 21 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 22 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 23 N -0.92 -26.77 10.09 55.49 0.56 -26.21 16 24 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 C 0.14 2.84 6.25 -3.34 -0.02 2.82 16 29 C -0.09 -1.49 2.69 -90.93 -0.24 -1.73 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 C -0.11 -1.32 4.83 -27.87 -0.13 -1.46 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 34 H 0.07 0.66 7.17 -51.93 -0.37 0.29 16 35 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.16 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 39 H 0.07 0.78 7.17 -51.93 -0.37 0.40 16 40 H 0.40 3.31 8.59 -40.82 -0.35 2.96 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.68 7.17 -51.93 -0.37 1.31 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 46 H 0.11 2.92 5.69 -51.93 -0.30 2.63 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.02 0.49 6.50 -51.93 -0.34 0.15 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 51 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 396.78 15.07 5.98 5.98 Total: -1.00 -32.86 396.78 -10.61 -43.47 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.31 Total: 2.33 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -2.99 Total: -5.12 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.35 Total: -54.94 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.86 -10.61 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980138310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.587 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds