Wall clock time and date at job start Wed Apr 1 2020 02:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38145 * 120.49772 * 2 1 4 4 N 1.31820 * 120.89808 * 180.28781 * 3 2 1 5 5 C 1.31811 * 122.04729 * 359.73846 * 4 3 2 6 6 C 1.38156 * 120.89226 * 0.02562 * 5 4 3 7 7 C 1.50707 * 120.49489 * 179.97438 * 6 5 4 8 8 C 1.39812 * 119.00720 * 359.97363 * 6 5 4 9 9 C 1.48150 * 120.92587 * 179.97438 * 8 6 5 10 10 O 1.21517 * 119.99707 * 90.00138 * 9 8 6 11 11 N 1.34771 * 120.00236 * 270.00464 * 9 8 6 12 12 C 1.46503 * 120.00339 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.70123 * 35.59546 * 12 11 9 14 14 C 1.53292 * 109.71154 * 275.00439 * 12 11 9 15 15 C 1.52626 * 108.49810 * 176.52292 * 14 12 11 16 16 C 1.52986 * 110.92287 * 62.22148 * 15 14 12 17 17 H 1.08997 * 112.43167 * 73.36206 * 16 15 14 18 18 C 1.55840 * 106.37516 * 198.08458 * 16 15 14 19 19 N 1.47616 * 104.47445 * 77.06791 * 18 16 15 20 20 C 1.36932 * 125.72785 * 204.86363 * 19 18 16 21 21 H 1.08001 * 120.00120 * 179.97438 * 20 19 18 22 22 C 1.38813 * 119.99961 * 359.97438 * 20 19 18 23 23 N 1.31611 * 119.99819 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99751 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47459 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46771 * 120.00210 * 24 22 20 27 27 H 1.48494 * 109.47356 * 239.99888 * 24 22 20 28 28 C 1.47435 * 108.54828 * 24.86177 * 19 18 16 29 29 C 1.53377 * 106.51090 * 359.33352 * 28 19 18 30 30 H 1.08997 * 108.14475 * 91.62014 * 29 28 19 31 31 C 1.50892 * 113.08127 * 212.46257 * 29 28 19 32 32 H 1.08997 * 109.47335 * 270.19670 * 1 2 3 33 33 H 1.09002 * 109.47029 * 30.20511 * 1 2 3 34 34 H 1.09006 * 109.46658 * 150.20540 * 1 2 3 35 35 H 1.08004 * 119.55639 * 0.02806 * 3 2 1 36 36 H 1.07994 * 119.55615 * 180.02562 * 5 4 3 37 37 H 1.09004 * 109.46878 * 270.02336 * 7 6 5 38 38 H 1.09002 * 109.47044 * 30.01796 * 7 6 5 39 39 H 1.08994 * 109.47239 * 150.02078 * 7 6 5 40 40 H 0.97002 * 120.00272 * 0.02562 * 11 9 8 41 41 H 1.08997 * 109.63845 * 56.82101 * 14 12 11 42 42 H 1.09003 * 109.63224 * 296.21969 * 14 12 11 43 43 H 1.08998 * 109.19064 * 301.84882 * 15 14 12 44 44 H 1.08997 * 109.15343 * 182.56499 * 15 14 12 45 45 H 1.09003 * 110.43716 * 195.81900 * 18 16 15 46 46 H 1.09000 * 110.43225 * 318.32206 * 18 16 15 47 47 H 0.97009 * 119.99596 * 179.97438 * 23 22 20 48 48 H 1.09001 * 110.04887 * 240.06914 * 28 19 18 49 49 H 1.09000 * 110.04444 * 118.59529 * 28 19 18 50 50 H 1.08998 * 109.06079 * 305.33680 * 31 29 28 51 51 H 1.08996 * 109.00101 * 186.36946 * 31 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2081 1.1903 0.0000 4 7 3.5263 1.1995 -0.0057 5 6 4.2335 0.0872 -0.0065 6 6 3.6136 -1.1475 -0.0019 7 6 4.4310 -2.4136 -0.0034 8 6 2.2166 -1.2047 0.0043 9 6 1.5080 -2.5057 0.0088 10 8 1.2219 -3.0380 1.0631 11 7 1.1806 -3.0989 -1.1562 12 6 0.4803 -4.3857 -1.1518 13 1 -0.2163 -4.4220 -0.3141 14 6 1.4964 -5.5269 -1.0292 15 6 0.7344 -6.8462 -0.9397 16 6 -0.0812 -7.0933 -2.2103 17 1 0.5442 -7.3722 -3.0583 18 6 -1.1469 -8.1703 -1.8457 19 7 -2.1740 -7.4308 -1.0859 20 6 -3.0332 -7.9718 -0.1672 21 1 -3.7513 -7.3421 0.3370 22 6 -2.9814 -9.3298 0.1160 23 7 -2.1067 -10.0973 -0.4989 24 14 -4.1531 -10.0677 1.3698 25 1 -5.0314 -9.0012 1.9143 26 1 -4.9863 -11.1087 0.7159 27 1 -3.3736 -10.6800 2.4754 28 6 -2.1194 -6.0117 -1.4822 29 6 -0.9945 -5.8914 -2.5179 30 1 -1.4298 -6.0219 -3.5086 31 6 -0.2814 -4.5626 -2.4649 32 1 -0.3634 0.0035 1.0276 33 1 -0.3633 0.8882 -0.5170 34 1 -0.3633 -0.8919 -0.5107 35 1 1.6690 2.1262 0.0005 36 1 5.3120 0.1417 -0.0108 37 1 4.6239 -2.7202 -1.0315 38 1 5.3778 -2.2354 0.5064 39 1 3.8825 -3.2008 0.5137 40 1 1.4093 -2.6742 -1.9978 41 1 2.0959 -5.3885 -0.1295 42 1 2.1437 -5.5366 -1.9062 43 1 0.0616 -6.8140 -0.0828 44 1 1.4454 -7.6616 -0.8063 45 1 -1.5783 -8.6003 -2.7498 46 1 -0.7035 -8.9501 -1.2265 47 1 -2.0703 -11.0462 -0.3006 48 1 -1.8971 -5.3899 -0.6151 49 1 -3.0688 -5.7107 -1.9250 50 1 -1.0139 -3.7614 -2.5623 51 1 0.4224 -4.5042 -3.2952 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980138310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:21 Heat of formation + Delta-G solvation = -11.413754 kcal Electronic energy + Delta-G solvation = -30839.399150 eV Core-core repulsion = 26930.513484 eV Total energy + Delta-G solvation = -3908.885666 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.98761 -41.03765 -39.88364 -37.01657 -35.10384 -34.74438 -34.57484 -33.26494 -32.19049 -30.66641 -28.88155 -28.23762 -27.62255 -26.81129 -25.17763 -23.69485 -22.82741 -22.29117 -21.80045 -21.56695 -19.89575 -19.08784 -18.53279 -18.06822 -17.66462 -16.81872 -16.73824 -15.96652 -15.62189 -15.53066 -15.50794 -15.42037 -15.24055 -14.87797 -14.72337 -14.23803 -14.19701 -14.02542 -13.78543 -13.72381 -13.50345 -13.43401 -13.32425 -13.23973 -13.07581 -12.94775 -12.69673 -12.51528 -12.43044 -12.18998 -12.13145 -11.80481 -11.74903 -11.58273 -11.20790 -11.02960 -10.89161 -10.72840 -10.64384 -10.41261 -10.12081 -9.80551 -8.84591 -7.77236 -5.20084 -0.08379 0.03551 1.37586 1.43069 1.44128 1.54042 1.97970 2.48072 2.65295 3.31546 3.39977 3.51667 3.68257 3.69277 3.69717 3.71856 3.76097 3.94084 4.05255 4.16516 4.18961 4.24146 4.31820 4.38270 4.51878 4.55800 4.57219 4.62572 4.65365 4.67865 4.72976 4.74322 4.76235 4.92603 4.98601 5.04084 5.09660 5.10973 5.14919 5.15592 5.17668 5.24028 5.35844 5.40965 5.45460 5.51929 5.56147 5.62254 5.74639 5.87482 6.34317 6.40585 6.90187 7.08282 7.12401 7.80050 8.44150 9.24037 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.002547 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.026375 B =10992.492681 C =11278.608822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.103 4.103 3 C 0.090 3.910 4 N -0.486 5.486 5 C 0.091 3.909 6 C -0.101 4.101 7 C -0.117 4.117 8 C -0.102 4.102 9 C 0.571 3.429 10 O -0.573 6.573 11 N -0.695 5.695 12 C 0.150 3.850 13 H 0.055 0.945 14 C -0.110 4.110 15 C -0.094 4.094 16 C -0.096 4.096 17 H 0.105 0.895 18 C 0.156 3.844 19 N -0.623 5.623 20 C -0.235 4.235 21 H 0.073 0.927 22 C -0.067 4.067 23 N -0.946 5.946 24 Si 0.974 3.026 25 H -0.270 1.270 26 H -0.290 1.290 27 H -0.292 1.292 28 C 0.133 3.867 29 C -0.077 4.077 30 H 0.081 0.919 31 C -0.096 4.096 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.186 0.814 36 H 0.187 0.813 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.046 0.954 40 H 0.417 0.583 41 H 0.045 0.955 42 H 0.093 0.907 43 H 0.029 0.971 44 H 0.053 0.947 45 H -0.017 1.017 46 H 0.072 0.928 47 H 0.246 0.754 48 H 0.016 0.984 49 H 0.019 0.981 50 H 0.081 0.919 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.930 22.563 -6.944 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.105 4.105 3 C -0.066 4.066 4 N -0.194 5.194 5 C -0.066 4.066 6 C -0.104 4.104 7 C -0.174 4.174 8 C -0.113 4.113 9 C 0.357 3.643 10 O -0.452 6.452 11 N -0.346 5.346 12 C 0.046 3.954 13 H 0.073 0.927 14 C -0.148 4.148 15 C -0.133 4.133 16 C -0.115 4.115 17 H 0.123 0.877 18 C 0.031 3.969 19 N -0.348 5.348 20 C -0.364 4.364 21 H 0.091 0.909 22 C -0.259 4.259 23 N -0.596 5.596 24 Si 0.803 3.197 25 H -0.195 1.195 26 H -0.217 1.217 27 H -0.219 1.219 28 C 0.008 3.992 29 C -0.097 4.097 30 H 0.099 0.901 31 C -0.134 4.134 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.203 0.797 36 H 0.204 0.796 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.254 0.746 41 H 0.064 0.936 42 H 0.111 0.889 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.001 0.999 46 H 0.090 0.910 47 H 0.056 0.944 48 H 0.034 0.966 49 H 0.037 0.963 50 H 0.099 0.901 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 14.067 22.810 -6.120 27.489 hybrid contribution -1.460 -1.780 0.802 2.437 sum 12.607 21.030 -5.319 25.090 Atomic orbital electron populations 1.20860 0.88853 1.04417 1.03285 1.21161 0.98361 0.92465 0.98561 1.23027 0.89647 0.97907 0.96040 1.67609 1.08827 1.32042 1.10885 1.23042 1.01608 0.85959 0.96009 1.21174 0.92175 0.98649 0.98398 1.20865 0.99895 0.92440 1.04185 1.20188 0.94483 0.93057 1.03570 1.18406 0.77753 0.84208 0.83979 1.90849 1.55340 1.66110 1.32911 1.45897 1.58295 1.21993 1.08383 1.20893 0.93425 0.81786 0.99309 0.92706 1.21770 0.97533 0.93423 1.02123 1.21214 0.97740 0.96850 0.97472 1.22495 0.95897 0.95645 0.97475 0.87654 1.22045 0.88004 0.93973 0.92885 1.44863 1.39803 1.04035 1.46145 1.19430 1.10744 0.92163 1.14050 0.90880 1.25548 1.01429 0.96584 1.02348 1.70046 1.38786 1.04493 1.46278 0.85060 0.78139 0.78141 0.78335 1.19489 1.21672 1.21947 1.21443 0.96554 0.85662 0.95543 1.21187 0.94900 0.94750 0.98823 0.90071 1.21112 0.99714 0.96257 0.96280 0.90893 0.87547 0.92178 0.79685 0.79619 0.88414 0.88448 0.93463 0.74595 0.93571 0.88882 0.95182 0.92779 0.99908 0.90963 0.94436 0.96610 0.96275 0.90054 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 9.67 71.24 0.69 -1.09 16 2 C -0.10 -1.82 5.93 -19.50 -0.12 -1.94 16 3 C 0.09 1.41 10.86 84.67 0.92 2.33 16 4 N -0.49 -8.66 10.34 -196.00 -2.03 -10.68 16 5 C 0.09 1.39 10.86 84.68 0.92 2.31 16 6 C -0.10 -1.76 5.93 -19.50 -0.12 -1.88 16 7 C -0.12 -1.67 9.67 71.24 0.69 -0.98 16 8 C -0.10 -2.12 5.67 -19.88 -0.11 -2.23 16 9 C 0.57 14.57 4.48 86.88 0.39 14.96 16 10 O -0.57 -20.86 16.78 -3.77 -0.06 -20.92 16 11 N -0.70 -14.00 5.10 -444.91 -2.27 -16.27 16 12 C 0.15 3.87 2.31 45.03 0.10 3.97 16 13 H 0.05 1.92 6.22 -2.38 -0.01 1.91 16 14 C -0.11 -2.99 5.52 30.57 0.17 -2.82 16 15 C -0.09 -3.36 4.81 30.47 0.15 -3.21 16 16 C -0.10 -3.34 3.72 -9.46 -0.04 -3.38 16 17 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 18 C 0.16 7.65 5.17 87.15 0.45 8.11 16 19 N -0.62 -32.64 2.93 -690.42 -2.02 -34.66 16 20 C -0.23 -13.62 10.28 84.03 0.86 -12.76 16 21 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 23 N -0.95 -57.40 10.09 21.65 0.22 -57.18 16 24 Si 0.97 47.31 29.55 68.60 2.03 49.34 16 25 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 28 C 0.13 5.52 6.25 86.33 0.54 6.06 16 29 C -0.08 -2.38 2.69 -10.99 -0.03 -2.41 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 C -0.10 -2.05 4.83 29.85 0.14 -1.90 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.11 0.95 8.10 -2.39 -0.02 0.93 16 34 H 0.06 1.04 7.17 -2.38 -0.02 1.03 16 35 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 36 H 0.19 1.70 8.06 -2.91 -0.02 1.67 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.10 0.98 8.10 -2.39 -0.02 0.96 16 39 H 0.05 0.96 7.17 -2.39 -0.02 0.94 16 40 H 0.42 5.43 8.59 -92.71 -0.80 4.63 16 41 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.03 1.35 7.17 -2.39 -0.02 1.33 16 44 H 0.05 1.91 8.14 -2.39 -0.02 1.90 16 45 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 46 H 0.07 4.10 5.69 -2.39 -0.01 4.08 16 47 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 48 H 0.02 0.68 6.50 -2.39 -0.02 0.67 16 49 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -77.87 396.78 2.08 -75.79 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.14 Total: 14.87 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: 6.08 Total: -0.28 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -6.10 Total: -118.79 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.06 Total: -20.92 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -77.87 2.08 -75.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980138310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.379 kcal (2) G-P(sol) polarization free energy of solvation -77.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds