Wall clock time and date at job start Wed Apr 1 2020 02:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47292 * 2 1 4 4 C 1.50702 * 109.47484 * 120.00437 * 2 1 3 5 5 C 1.38353 * 119.45651 * 275.00093 * 4 2 1 6 6 C 1.38356 * 119.30067 * 179.97438 * 5 4 2 7 7 C 1.40026 * 118.28841 * 359.97438 * 6 5 4 8 8 C 1.47837 * 120.55667 * 180.02562 * 7 6 5 9 9 O 1.21563 * 120.00252 * 340.83448 * 8 7 6 10 10 N 1.34774 * 120.00211 * 160.83124 * 8 7 6 11 11 C 1.47212 * 126.70696 * 173.97977 * 10 8 7 12 12 C 1.53779 * 106.38092 * 148.69935 * 11 10 8 13 13 H 1.08996 * 112.38472 * 256.84056 * 12 11 10 14 14 C 1.54323 * 109.06085 * 132.42283 * 12 11 10 15 15 C 1.55053 * 103.93683 * 222.02661 * 14 12 11 16 16 C 1.55055 * 102.10740 * 40.05954 * 15 14 12 17 17 H 1.08998 * 110.53334 * 78.56118 * 16 15 14 18 18 N 1.46499 * 110.65715 * 201.27207 * 16 15 14 19 19 C 1.36939 * 120.00152 * 271.55475 * 18 16 15 20 20 H 1.08007 * 120.00012 * 359.97438 * 19 18 16 21 21 C 1.38809 * 120.00374 * 180.02562 * 19 18 16 22 22 N 1.31621 * 119.99976 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00130 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47068 * 59.99974 * 23 21 19 25 25 H 1.48503 * 109.46932 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47188 * 299.99587 * 23 21 19 27 27 C 1.54322 * 103.93817 * 319.94263 * 16 15 14 28 28 H 1.08992 * 111.69157 * 262.79191 * 27 16 15 29 29 C 1.47217 * 126.69935 * 353.95124 * 10 8 7 30 30 C 1.39515 * 118.87970 * 0.27907 * 7 6 5 31 31 N 1.31695 * 120.56925 * 359.45172 * 30 7 6 32 32 H 1.09006 * 109.47069 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47384 * 299.99664 * 1 2 3 34 34 H 1.09003 * 109.47255 * 59.99708 * 1 2 3 35 35 H 1.09009 * 109.47063 * 240.00340 * 2 1 3 36 36 H 1.08995 * 109.47520 * 179.97438 * 3 2 1 37 37 H 1.09003 * 109.47209 * 300.00320 * 3 2 1 38 38 H 1.09005 * 109.46846 * 59.99675 * 3 2 1 39 39 H 1.08000 * 120.34658 * 0.02562 * 5 4 2 40 40 H 1.07997 * 120.85474 * 180.02562 * 6 5 4 41 41 H 1.08994 * 110.07384 * 29.46728 * 11 10 8 42 42 H 1.09004 * 110.11645 * 267.95610 * 11 10 8 43 43 H 1.08995 * 110.54031 * 340.64305 * 14 12 11 44 44 H 1.08999 * 110.53538 * 103.41850 * 14 12 11 45 45 H 1.09007 * 110.90577 * 281.86116 * 15 14 12 46 46 H 1.08993 * 110.90756 * 158.26028 * 15 14 12 47 47 H 0.97002 * 120.00476 * 91.55201 * 18 16 15 48 48 H 0.96996 * 120.00582 * 180.02562 * 22 21 19 49 49 H 1.08998 * 110.07559 * 92.06731 * 29 10 8 50 50 H 1.09009 * 110.07240 * 330.53467 * 29 10 8 51 51 H 1.08004 * 119.71502 * 179.71877 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.1602 -0.0095 2.4163 6 6 2.6213 -0.6651 3.5441 7 6 2.9418 -2.0240 3.4372 8 6 3.4383 -2.7737 4.6107 9 8 3.8999 -2.1758 5.5631 10 7 3.3791 -4.1200 4.6246 11 6 3.9379 -5.0148 5.6513 12 6 3.0166 -6.2449 5.7026 13 1 2.3491 -6.2280 6.5641 14 6 3.8807 -7.5233 5.6756 15 6 3.1205 -8.4675 4.7088 16 6 2.6590 -7.4910 3.5963 17 1 3.4826 -7.2668 2.9186 18 7 1.5242 -8.0491 2.8568 19 6 1.7438 -8.8500 1.7679 20 1 2.7536 -9.0698 1.4541 21 6 0.6686 -9.3785 1.0668 22 7 -0.5620 -9.1102 1.4489 23 14 0.9682 -10.4704 -0.4189 24 1 1.7492 -11.6642 -0.0064 25 1 -0.3343 -10.9032 -0.9858 26 1 1.7278 -9.7122 -1.4452 27 6 2.2321 -6.2241 4.3674 28 1 1.1550 -6.1963 4.5315 29 6 2.7424 -4.9831 3.6162 30 6 2.7899 -2.6571 2.2033 31 7 2.3422 -1.9908 1.1592 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8901 36 1 3.1299 1.4425 0.0005 37 1 1.6766 1.9564 -0.8900 38 1 1.6766 1.9563 0.8900 39 1 1.9020 1.0382 2.4614 40 1 2.7303 -0.1425 4.4828 41 1 3.9473 -4.5138 6.6192 42 1 4.9489 -5.3157 5.3764 43 1 4.8766 -7.3036 5.2911 44 1 3.9425 -7.9641 6.6705 45 1 2.2641 -8.9247 5.2048 46 1 3.7870 -9.2296 4.3052 47 1 0.6172 -7.8515 3.1384 48 1 -1.3134 -9.4797 0.9593 49 1 3.4713 -5.2765 2.8607 50 1 1.9084 -4.4596 3.1485 51 1 3.0375 -3.7037 2.1045 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026283339.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:08 Heat of formation + Delta-G solvation = 12.786315 kcal Electronic energy + Delta-G solvation = -30256.734375 eV Core-core repulsion = 26348.898102 eV Total energy + Delta-G solvation = -3907.836272 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.08295 -39.98104 -38.39962 -35.82599 -35.26675 -33.52962 -32.69485 -31.39876 -30.55786 -29.44379 -28.41536 -27.48588 -25.29368 -25.27580 -23.63171 -23.31612 -22.83727 -20.86747 -20.39703 -19.71737 -19.16385 -17.72800 -17.22125 -16.60881 -16.45762 -16.03091 -15.45272 -15.22421 -14.82898 -14.60522 -14.44410 -14.21661 -13.94526 -13.86312 -13.36388 -13.25201 -13.10482 -13.05338 -12.95551 -12.67825 -12.36292 -12.29166 -12.00203 -11.70538 -11.50407 -11.44629 -11.25608 -11.17977 -10.82812 -10.78865 -10.72453 -10.43105 -10.38877 -10.26821 -10.12648 -10.06579 -9.97379 -9.68940 -9.48861 -9.16877 -8.90125 -8.72378 -6.98793 -5.79836 -3.08954 0.50517 1.05773 2.70766 2.87734 3.42599 3.47566 3.48041 3.64516 3.89702 4.32447 4.37842 4.55039 4.58903 4.66931 4.73148 4.78535 4.81076 4.87834 4.90907 4.94087 5.21392 5.26243 5.35336 5.38035 5.40558 5.46951 5.50634 5.54320 5.59376 5.60968 5.66693 5.67515 5.76340 5.79925 5.86925 5.93518 5.94661 5.99088 6.02162 6.03706 6.06035 6.18360 6.26509 6.36463 6.40665 6.47602 6.61024 6.75467 6.99141 7.44471 7.67193 7.75581 8.03391 8.38409 9.49860 10.06280 10.40307 11.42485 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008463 B = 0.003416 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.607817 B = 8193.868162 C =11050.396778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.148 4.148 4 C 0.157 3.843 5 C -0.182 4.182 6 C -0.016 4.016 7 C -0.191 4.191 8 C 0.582 3.418 9 O -0.544 6.544 10 N -0.611 5.611 11 C 0.112 3.888 12 C -0.100 4.100 13 H 0.086 0.914 14 C -0.117 4.117 15 C -0.143 4.143 16 C 0.184 3.816 17 H 0.057 0.943 18 N -0.720 5.720 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.010 4.010 22 N -0.932 5.932 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.106 4.106 28 H 0.092 0.908 29 C 0.097 3.903 30 C 0.131 3.869 31 N -0.481 5.481 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.142 0.858 40 H 0.144 0.856 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.384 0.616 48 H 0.256 0.744 49 H 0.081 0.919 50 H 0.083 0.917 51 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.193 18.170 3.715 19.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 C -0.205 4.205 4 C 0.019 3.981 5 C -0.201 4.201 6 C -0.043 4.043 7 C -0.196 4.196 8 C 0.371 3.629 9 O -0.423 6.423 10 N -0.343 5.343 11 C -0.010 4.010 12 C -0.120 4.120 13 H 0.105 0.895 14 C -0.155 4.155 15 C -0.184 4.184 16 C 0.073 3.927 17 H 0.075 0.925 18 N -0.360 5.360 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.580 5.580 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.126 4.126 28 H 0.110 0.890 29 C -0.025 4.025 30 C -0.027 4.027 31 N -0.189 5.189 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.218 0.782 48 H 0.066 0.934 49 H 0.099 0.901 50 H 0.101 0.899 51 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.389 18.048 3.251 19.419 hybrid contribution -0.152 -0.302 0.113 0.356 sum 6.237 17.746 3.363 19.108 Atomic orbital electron populations 1.21809 0.93207 1.02833 1.02156 1.20132 0.96516 0.95375 0.94998 1.21935 1.01385 0.94785 1.02414 1.21536 0.91872 0.89913 0.94747 1.21954 1.03248 1.01904 0.93039 1.21661 0.91108 0.92353 0.99159 1.20888 1.07194 0.95824 0.95743 1.17667 0.78619 0.80371 0.86228 1.90760 1.47367 1.67951 1.36204 1.48501 1.55743 1.04440 1.25583 1.22235 0.96849 0.89693 0.92212 1.22577 0.96788 0.94206 0.98386 0.89522 1.22506 0.98131 0.94982 0.99902 1.23297 0.99467 0.98268 0.97323 1.21242 0.91301 0.89114 0.91046 0.92475 1.42425 1.03165 1.57945 1.32451 1.19172 0.92539 1.21821 1.03738 0.91221 1.24725 0.95223 1.01099 0.99610 1.69640 0.97236 1.48998 1.42108 0.86304 0.76658 0.80548 0.82889 1.21298 1.21724 1.21198 1.22922 1.00553 0.95056 0.94069 0.89000 1.22703 0.97467 0.91130 0.91214 1.23832 0.91152 1.00692 0.87051 1.67635 1.11521 1.08279 1.31504 0.91868 0.92485 0.91681 0.88828 0.92309 0.91647 0.92107 0.84033 0.83782 0.90449 0.90966 0.91629 0.92115 0.91515 0.92070 0.78178 0.93433 0.90123 0.89899 0.80719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.18 37.15 0.34 -0.84 16 2 C -0.05 -0.46 3.23 -91.77 -0.30 -0.75 16 3 C -0.15 -0.97 8.61 37.16 0.32 -0.65 16 4 C 0.16 1.80 5.79 -82.51 -0.48 1.32 16 5 C -0.18 -1.84 9.16 -39.50 -0.36 -2.20 16 6 C -0.02 -0.19 9.72 -38.87 -0.38 -0.57 16 7 C -0.19 -2.58 5.77 -104.82 -0.60 -3.18 16 8 C 0.58 8.68 7.73 -12.33 -0.10 8.58 16 9 O -0.54 -9.41 16.79 5.31 0.09 -9.32 16 10 N -0.61 -8.39 3.32 -172.69 -0.57 -8.96 16 11 C 0.11 1.40 6.57 -3.25 -0.02 1.38 16 12 C -0.10 -1.26 3.91 -88.53 -0.35 -1.61 16 13 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 14 C -0.12 -1.45 6.35 -24.95 -0.16 -1.61 16 15 C -0.14 -2.30 6.60 -24.56 -0.16 -2.46 16 16 C 0.18 3.28 3.02 -66.15 -0.20 3.08 16 17 H 0.06 1.03 7.15 -51.93 -0.37 0.66 16 18 N -0.72 -16.74 5.23 -51.71 -0.27 -17.01 16 19 C -0.24 -6.37 9.97 -15.06 -0.15 -6.52 16 20 H 0.07 1.79 7.83 -52.48 -0.41 1.37 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 23 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 C -0.11 -1.58 3.60 -88.53 -0.32 -1.89 16 28 H 0.09 1.48 7.80 -51.93 -0.40 1.07 16 29 C 0.10 1.34 4.58 -3.25 -0.01 1.32 16 30 C 0.13 1.77 9.23 -17.13 -0.16 1.62 16 31 N -0.48 -6.68 10.25 -9.14 -0.09 -6.77 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.09 0.90 8.14 -51.92 -0.42 0.47 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.34 6.48 -51.93 -0.34 0.00 16 39 H 0.14 1.02 6.29 -52.49 -0.33 0.69 16 40 H 0.14 1.52 7.85 -52.49 -0.41 1.11 16 41 H 0.08 0.98 7.87 -51.93 -0.41 0.57 16 42 H 0.07 0.84 7.13 -51.93 -0.37 0.47 16 43 H 0.07 0.76 7.19 -51.93 -0.37 0.38 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.38 9.61 7.59 -40.82 -0.31 9.30 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.08 1.09 6.40 -51.93 -0.33 0.76 16 50 H 0.08 1.17 6.06 -51.92 -0.31 0.86 16 51 H 0.18 2.30 4.39 -52.48 -0.23 2.07 16 LS Contribution 397.77 15.07 5.99 5.99 Total: -1.00 -31.29 397.77 -10.30 -41.59 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.97 Total: 9.60 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -3.18 Total: -5.36 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -0.21 Total: -59.32 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.29 -10.30 -41.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026283339.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.375 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds