Wall clock time and date at job start Wed Apr 1 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47012 * 2 1 4 4 C 1.50696 * 109.46910 * 180.02562 * 3 2 1 5 5 C 1.38180 * 119.55505 * 125.00227 * 4 3 2 6 6 C 1.39793 * 119.00153 * 180.02562 * 5 4 3 7 7 C 1.48149 * 120.92234 * 179.97438 * 6 5 4 8 8 O 1.21514 * 119.99616 * 339.49521 * 7 6 5 9 9 N 1.34776 * 120.00136 * 159.49071 * 7 6 5 10 10 C 1.48346 * 128.19533 * 173.84906 * 9 7 6 11 11 C 1.54458 * 104.30381 * 138.23528 * 10 9 7 12 12 H 1.08998 * 111.93421 * 263.68496 * 11 10 9 13 13 C 1.54148 * 108.79756 * 138.54151 * 11 10 9 14 14 C 1.55809 * 103.88560 * 222.71945 * 13 11 10 15 15 C 1.54835 * 102.28823 * 39.43982 * 14 13 11 16 16 H 1.08991 * 110.45915 * 79.77932 * 15 14 13 17 17 N 1.46501 * 110.56503 * 202.29649 * 15 14 13 18 18 C 1.36939 * 119.99966 * 269.98529 * 17 15 14 19 19 H 1.08005 * 119.99919 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00323 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99935 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99959 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47272 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46942 * 120.00086 * 22 20 18 25 25 H 1.48497 * 109.47388 * 240.00165 * 22 20 18 26 26 C 1.54149 * 104.34843 * 321.06153 * 15 14 13 27 27 H 1.09001 * 111.89594 * 261.14414 * 26 15 14 28 28 C 1.48338 * 128.20035 * 353.85385 * 9 7 6 29 29 C 1.39837 * 118.15658 * 0.24757 * 6 5 4 30 30 C 1.38131 * 119.00034 * 359.47988 * 29 6 5 31 31 N 1.31803 * 119.55636 * 304.97965 * 4 3 2 32 32 H 1.08999 * 109.47047 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46204 * 299.99553 * 1 2 3 34 34 H 1.09000 * 109.47125 * 59.99241 * 1 2 3 35 35 H 1.09004 * 109.46204 * 240.00446 * 2 1 3 36 36 H 1.08994 * 109.47542 * 120.00855 * 2 1 3 37 37 H 1.08998 * 109.46929 * 60.00872 * 3 2 1 38 38 H 1.09002 * 109.47290 * 300.00277 * 3 2 1 39 39 H 1.07996 * 120.49594 * 0.02562 * 5 4 3 40 40 H 1.08997 * 110.46553 * 19.52299 * 10 9 7 41 41 H 1.09000 * 110.46013 * 256.94106 * 10 9 7 42 42 H 1.08995 * 110.46083 * 342.75589 * 13 11 10 43 43 H 1.09000 * 110.45817 * 105.31834 * 13 11 10 44 44 H 1.09004 * 111.58178 * 281.00389 * 14 13 11 45 45 H 1.08991 * 110.36139 * 157.32697 * 14 13 11 46 46 H 0.96999 * 120.00624 * 89.99549 * 17 15 14 47 47 H 0.96995 * 120.00017 * 179.97438 * 21 20 18 48 48 H 1.08997 * 110.46830 * 103.05478 * 28 9 7 49 49 H 1.09006 * 110.46217 * 340.47340 * 28 9 7 50 50 H 1.08003 * 120.49786 * 179.73490 * 29 6 5 51 51 H 1.08000 * 119.54680 * 180.26975 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2282 2.1321 -0.9854 6 6 5.6260 2.1239 -0.9753 7 6 6.3992 2.8483 -2.0108 8 8 5.8751 3.1388 -3.0679 9 7 7.6836 3.1851 -1.7803 10 6 8.6558 3.7926 -2.7219 11 6 9.3940 4.8536 -1.8763 12 1 8.9656 5.8475 -2.0057 13 6 10.8960 4.8053 -2.2197 14 6 11.6001 4.9183 -0.8344 15 6 10.6952 4.0435 0.0674 16 1 10.9258 2.9873 -0.0716 17 7 10.8530 4.4200 1.4744 18 6 11.8034 3.8054 2.2453 19 1 12.4370 3.0434 1.8158 20 6 11.9526 4.1617 3.5785 21 7 11.1801 5.0899 4.1020 22 14 13.2496 3.3237 4.6298 23 1 13.9812 2.3245 3.8102 24 1 14.2049 4.3396 5.1403 25 1 12.5941 2.6414 5.7743 26 6 9.2638 4.3505 -0.4151 27 1 8.7666 5.0793 0.2250 28 6 8.4600 3.0360 -0.5252 29 6 6.2744 1.4081 0.0361 30 6 5.5145 0.7514 0.9844 31 7 4.1975 0.7850 0.9384 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3632 0.5138 0.8901 34 1 -0.3633 0.5139 -0.8899 35 1 1.8932 -0.5138 -0.8901 36 1 1.8934 -0.5139 0.8898 37 1 1.6768 1.9562 0.8901 38 1 1.6767 1.9564 -0.8900 39 1 3.6887 2.6693 -1.7514 40 1 8.1353 4.2641 -3.5555 41 1 9.3557 3.0401 -3.0850 42 1 11.1417 3.8707 -2.7237 43 1 11.1725 5.6578 -2.8401 44 1 11.6207 5.9482 -0.4779 45 1 12.6077 4.5061 -0.8864 46 1 10.2841 5.1045 1.8601 47 1 11.2841 5.3386 5.0338 48 1 9.1337 2.1818 -0.5929 49 1 7.7893 2.9269 0.3271 50 1 7.3530 1.3728 0.0774 51 1 6.0061 0.1995 1.7719 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026288949.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:44:57 Heat of formation + Delta-G solvation = 11.276515 kcal Electronic energy + Delta-G solvation = -29882.894096 eV Core-core repulsion = 25974.992354 eV Total energy + Delta-G solvation = -3907.901742 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.99866 -39.90970 -38.37973 -35.54371 -35.20565 -33.59332 -32.67570 -31.60363 -30.99238 -29.39664 -28.58206 -27.25401 -25.33558 -25.05600 -23.37955 -23.00805 -22.74810 -21.52235 -20.37624 -19.45301 -19.07352 -17.56823 -17.24623 -16.56754 -16.33077 -15.92163 -15.60569 -15.30191 -15.10409 -14.92442 -14.41482 -14.28753 -14.05794 -13.98265 -13.76934 -13.27724 -13.10835 -13.06148 -12.76281 -12.50063 -12.37062 -12.19296 -11.90907 -11.73992 -11.49959 -11.45352 -11.24192 -10.96017 -10.90428 -10.84802 -10.74120 -10.44277 -10.37966 -10.25641 -10.24340 -10.00968 -9.98047 -9.74044 -9.52008 -9.13619 -8.95549 -8.81908 -7.02681 -5.84018 -3.13187 0.59559 0.90406 2.68919 2.78154 3.38150 3.44164 3.46385 3.63376 4.03795 4.14496 4.45491 4.51012 4.59228 4.65362 4.76216 4.81093 4.82043 4.88007 4.94428 5.00077 5.20804 5.28672 5.34335 5.36562 5.40969 5.48854 5.50479 5.53263 5.55276 5.57246 5.63635 5.68149 5.72673 5.79337 5.80284 5.89301 5.90454 5.97873 5.99596 6.03913 6.08324 6.10957 6.23245 6.34032 6.44198 6.45129 6.58907 6.72819 6.96284 7.41153 7.63993 7.76188 7.95784 8.34241 9.45764 10.02545 10.36437 11.38398 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010582 B = 0.002786 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.321526 B =10049.384951 C =12254.087683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.068 4.068 4 C 0.124 3.876 5 C -0.117 4.117 6 C -0.079 4.079 7 C 0.579 3.421 8 O -0.539 6.539 9 N -0.615 5.615 10 C 0.110 3.890 11 C -0.102 4.102 12 H 0.085 0.915 13 C -0.117 4.117 14 C -0.142 4.142 15 C 0.184 3.816 16 H 0.057 0.943 17 N -0.721 5.721 18 C -0.241 4.241 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C -0.108 4.108 27 H 0.089 0.911 28 C 0.096 3.904 29 C -0.155 4.155 30 C 0.104 3.896 31 N -0.467 5.467 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.143 0.857 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.082 0.918 49 H 0.089 0.911 50 H 0.154 0.846 51 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.916 -6.896 -11.963 19.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.106 4.106 4 C -0.014 4.014 5 C -0.138 4.138 6 C -0.090 4.090 7 C 0.368 3.632 8 O -0.417 6.417 9 N -0.348 5.348 10 C -0.012 4.012 11 C -0.122 4.122 12 H 0.103 0.897 13 C -0.155 4.155 14 C -0.182 4.182 15 C 0.073 3.927 16 H 0.075 0.925 17 N -0.361 5.361 18 C -0.372 4.372 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.128 4.128 27 H 0.107 0.893 28 C -0.026 4.026 29 C -0.175 4.175 30 C -0.053 4.053 31 N -0.177 5.177 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.161 0.839 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.078 0.922 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.101 0.899 49 H 0.107 0.893 50 H 0.171 0.829 51 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.647 -7.334 -11.829 20.205 hybrid contribution 1.250 0.369 0.238 1.325 sum -13.397 -6.965 -11.591 19.036 Atomic orbital electron populations 1.21787 0.95637 1.01738 1.01820 1.21439 0.95530 0.95557 1.02889 1.20589 0.88041 0.98590 1.03396 1.21250 0.96909 0.92892 0.90313 1.22069 0.93069 0.99282 0.99353 1.20261 0.94269 0.98628 0.95797 1.17781 0.79971 0.78884 0.86555 1.90763 1.68820 1.55368 1.26783 1.49080 1.09710 1.60929 1.15073 1.22713 0.90247 0.95405 0.92839 1.22744 0.96264 0.98377 0.94770 0.89657 1.22565 0.93348 1.01219 0.98373 1.23391 0.99388 1.01740 0.93724 1.21111 0.89458 0.96548 0.85565 0.92472 1.42462 1.42336 1.46470 1.04805 1.19266 1.10461 1.15760 0.91683 0.91109 1.24740 0.99635 0.99269 0.97155 1.69661 1.41188 1.33533 1.13538 0.86159 0.81093 0.78618 0.80553 1.20547 1.21893 1.21851 1.23101 0.98152 0.95880 0.95691 0.89265 1.23119 0.94421 0.98896 0.86172 1.22908 1.02834 0.97297 0.94427 1.22810 0.89014 0.96141 0.97374 1.67329 1.10263 1.16870 1.23200 0.92656 0.92580 0.92771 0.92226 0.90739 0.89746 0.90217 0.83879 0.90152 0.90481 0.91478 0.92257 0.91356 0.92193 0.78187 0.93502 0.89949 0.89259 0.82882 0.81802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.12 -0.95 5.79 -26.73 -0.15 -1.11 16 3 C -0.07 -0.59 5.61 -27.89 -0.16 -0.75 16 4 C 0.12 1.42 6.18 -82.63 -0.51 0.91 16 5 C -0.12 -1.42 9.28 -39.02 -0.36 -1.79 16 6 C -0.08 -1.03 5.80 -104.65 -0.61 -1.64 16 7 C 0.58 8.51 7.78 -12.19 -0.09 8.41 16 8 O -0.54 -9.31 16.89 5.35 0.09 -9.22 16 9 N -0.62 -8.18 3.31 -169.89 -0.56 -8.75 16 10 C 0.11 1.32 6.60 -2.26 -0.01 1.31 16 11 C -0.10 -1.27 3.94 -88.15 -0.35 -1.62 16 12 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 13 C -0.12 -1.41 6.41 -24.63 -0.16 -1.57 16 14 C -0.14 -2.24 6.62 -24.26 -0.16 -2.40 16 15 C 0.18 3.19 3.06 -66.36 -0.20 2.99 16 16 H 0.06 0.99 7.20 -51.93 -0.37 0.62 16 17 N -0.72 -16.46 5.21 -51.91 -0.27 -16.73 16 18 C -0.24 -6.22 9.96 -15.06 -0.15 -6.37 16 19 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -26.99 13.06 55.49 0.72 -26.26 16 22 Si 0.90 21.51 29.55 -169.99 -5.02 16.48 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 C -0.11 -1.57 3.60 -88.15 -0.32 -1.89 16 27 H 0.09 1.44 7.80 -51.93 -0.40 1.04 16 28 C 0.10 1.25 4.69 -2.26 -0.01 1.23 16 29 C -0.15 -1.82 8.13 -39.02 -0.32 -2.13 16 30 C 0.10 1.18 11.17 -17.60 -0.20 0.99 16 31 N -0.47 -5.73 9.85 -9.52 -0.09 -5.83 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.69 7.94 -51.93 -0.41 0.27 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 39 H 0.14 1.62 7.76 -52.49 -0.41 1.21 16 40 H 0.08 0.99 7.85 -51.93 -0.41 0.58 16 41 H 0.08 0.83 7.20 -51.93 -0.37 0.46 16 42 H 0.07 0.73 7.18 -51.93 -0.37 0.36 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.38 9.49 7.60 -40.82 -0.31 9.18 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 48 H 0.08 1.00 7.13 -51.93 -0.37 0.63 16 49 H 0.09 1.17 5.53 -51.93 -0.29 0.88 16 50 H 0.15 1.64 4.93 -52.48 -0.26 1.39 16 51 H 0.16 1.49 8.06 -52.49 -0.42 1.06 16 LS Contribution 402.67 15.07 6.07 6.07 Total: -1.00 -30.88 402.67 -10.72 -41.60 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -8.16 Total: 9.10 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -3.49 Total: -6.47 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.20 Total: -57.56 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.88 -10.72 -41.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026288949.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.876 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds