Wall clock time and date at job start Wed Apr 1 2020 02:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47228 * 2 1 4 4 C 1.50703 * 109.47238 * 120.00071 * 2 1 3 5 5 O 1.21285 * 119.99858 * 239.24760 * 4 2 1 6 6 N 1.34771 * 119.99904 * 59.24845 * 4 2 1 7 7 C 1.48658 * 128.35644 * 355.38301 * 6 4 2 8 8 C 1.54468 * 104.34672 * 138.18324 * 7 6 4 9 9 H 1.09001 * 112.71122 * 263.25300 * 8 7 6 10 10 C 1.54150 * 108.79202 * 138.54622 * 8 7 6 11 11 C 1.54837 * 104.34587 * 224.04529 * 10 8 7 12 12 C 1.54834 * 102.73495 * 38.22344 * 11 10 8 13 13 H 1.09001 * 110.45880 * 80.49084 * 12 11 10 14 14 N 1.46500 * 110.56901 * 203.00597 * 12 11 10 15 15 C 1.36941 * 119.99603 * 269.99294 * 14 12 11 16 16 H 1.07994 * 120.00038 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99730 * 179.97438 * 15 14 12 18 18 N 1.31612 * 119.99906 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99840 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47315 * 89.99838 * 19 17 15 21 21 H 1.48504 * 109.46804 * 209.99659 * 19 17 15 22 22 H 1.48495 * 109.46980 * 329.99623 * 19 17 15 23 23 C 1.54142 * 104.35002 * 321.77686 * 12 11 10 24 24 H 1.08997 * 111.89369 * 260.15000 * 23 12 11 25 25 C 1.48341 * 128.19493 * 175.28004 * 6 4 2 26 26 C 1.50707 * 109.46955 * 239.99836 * 2 1 3 27 27 C 1.38673 * 120.41232 * 52.84305 * 26 2 1 28 28 C 1.38631 * 118.41362 * 179.77958 * 27 26 2 29 29 C 1.38225 * 119.16246 * 0.51843 * 28 27 26 30 30 N 1.31855 * 120.76615 * 359.72008 * 29 28 27 31 31 C 1.31889 * 121.72451 * 0.02562 * 30 29 28 32 32 H 1.09000 * 109.46827 * 304.68526 * 1 2 3 33 33 H 1.09000 * 109.47067 * 64.68493 * 1 2 3 34 34 H 1.09000 * 109.46878 * 184.69026 * 1 2 3 35 35 H 1.09002 * 109.47476 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47157 * 300.00028 * 3 2 1 37 37 H 1.08997 * 109.47276 * 59.99850 * 3 2 1 38 38 H 1.09004 * 110.44488 * 19.46989 * 7 6 4 39 39 H 1.09001 * 110.55466 * 256.96307 * 7 6 4 40 40 H 1.08993 * 110.45854 * 105.32718 * 10 8 7 41 41 H 1.09006 * 110.45731 * 342.75720 * 10 8 7 42 42 H 1.09008 * 110.75638 * 279.91557 * 11 10 8 43 43 H 1.08996 * 110.75838 * 156.53879 * 11 10 8 44 44 H 0.96994 * 120.00004 * 89.98867 * 14 12 11 45 45 H 0.97006 * 120.00122 * 179.97438 * 18 17 15 46 46 H 1.08998 * 110.46556 * 103.06189 * 25 6 4 47 47 H 1.09001 * 110.46457 * 340.60075 * 25 6 4 48 48 H 1.07997 * 120.79464 * 0.02562 * 27 26 2 49 49 H 1.08000 * 120.41811 * 180.25915 * 28 27 26 50 50 H 1.07999 * 119.61913 * 179.74915 * 29 28 27 51 51 H 1.08000 * 119.61978 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7409 -0.1250 2.0219 6 7 1.6944 -1.9962 1.4514 7 6 0.7714 -2.8557 0.6644 8 6 1.4883 -4.2221 0.5930 9 1 2.0490 -4.3554 -0.3322 10 6 0.4477 -5.3403 0.8006 11 6 1.1331 -6.3255 1.7789 12 6 1.8858 -5.3785 2.7454 13 1 1.2038 -4.9803 3.4966 14 7 3.0009 -6.0788 3.3876 15 6 2.8044 -6.7378 4.5718 16 1 1.8276 -6.7409 5.0325 17 6 3.8609 -7.4017 5.1801 18 7 3.6722 -8.0347 6.3185 19 14 5.5506 -7.3956 4.3836 20 1 6.3257 -6.2286 4.8759 21 1 6.2670 -8.6486 4.7329 22 1 5.4023 -7.3048 2.9089 23 6 2.4102 -4.2467 1.8400 24 1 3.4612 -4.3836 1.5856 25 6 2.1575 -2.8926 2.5389 26 6 2.0323 -0.7105 -1.2305 27 6 1.5853 -0.3364 -2.4888 28 6 2.0781 -1.0150 -3.5926 29 6 2.9839 -2.0417 -3.4030 30 7 3.3832 -2.3736 -2.1909 31 6 2.9394 -1.7469 -1.1187 32 1 -0.3633 0.5848 0.8451 33 1 -0.3633 0.4394 -0.9290 34 1 -0.3633 -1.0242 0.0840 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 0.6304 -2.4467 -0.3361 39 1 -0.1873 -2.9544 1.1735 40 1 0.2261 -5.8348 -0.1451 41 1 -0.4629 -4.9360 1.2427 42 1 1.8325 -6.9723 1.2490 43 1 0.3907 -6.9155 2.3162 44 1 3.8782 -6.0756 2.9740 45 1 4.4104 -8.4990 6.7435 46 1 1.3862 -2.9958 3.3021 47 1 3.0796 -2.5129 2.9790 48 1 0.8733 0.4671 -2.6063 49 1 1.7552 -0.7476 -4.5879 50 1 3.3695 -2.5780 -4.2574 51 1 3.2897 -2.0466 -0.1420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026298921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:12 Heat of formation + Delta-G solvation = 25.269727 kcal Electronic energy + Delta-G solvation = -31673.471854 eV Core-core repulsion = 27766.176903 eV Total energy + Delta-G solvation = -3907.294951 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.50120 -39.90757 -38.78661 -35.87539 -35.33113 -33.40259 -32.38329 -31.22233 -30.59894 -29.70702 -28.70534 -27.55529 -25.55195 -24.96889 -23.84646 -23.53290 -22.48538 -21.50602 -20.23778 -19.28455 -18.91995 -17.91954 -17.49123 -16.96435 -16.59505 -15.98727 -15.70248 -15.21575 -15.07613 -14.56612 -14.32019 -14.21120 -14.00722 -13.76495 -13.54939 -13.35269 -13.22187 -12.76849 -12.68440 -12.62933 -12.59540 -12.57233 -12.31429 -11.92360 -11.79405 -11.62369 -11.59285 -11.35738 -10.93198 -10.81719 -10.66711 -10.43382 -10.35453 -10.32578 -10.10356 -9.98063 -9.81301 -9.63933 -9.57616 -9.24821 -8.89796 -8.76039 -7.25440 -5.76624 -3.12132 0.76670 0.95445 2.45832 2.80773 3.39773 3.43082 3.47703 3.48969 4.02104 4.05769 4.37681 4.48793 4.51415 4.58037 4.59517 4.60384 4.64632 4.81536 4.82822 4.84613 5.14738 5.17697 5.22100 5.25852 5.32070 5.35786 5.40810 5.48641 5.50930 5.55152 5.56101 5.60998 5.68736 5.74093 5.80055 5.81030 5.85770 5.88725 5.93856 5.98087 6.06619 6.13562 6.22727 6.26854 6.36842 6.40888 6.56796 6.73130 6.92204 7.48310 7.70925 7.99415 8.03121 8.42689 9.20917 9.93737 10.12926 11.41656 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.003231 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.725737 B = 8663.896165 C = 8990.277704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.033 4.033 3 C -0.124 4.124 4 C 0.542 3.458 5 O -0.533 6.533 6 N -0.623 5.623 7 C 0.100 3.900 8 C -0.101 4.101 9 H 0.087 0.913 10 C -0.116 4.116 11 C -0.141 4.141 12 C 0.190 3.810 13 H 0.066 0.934 14 N -0.744 5.744 15 C -0.244 4.244 16 H 0.090 0.910 17 C 0.006 3.994 18 N -0.934 5.934 19 Si 0.882 3.118 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.277 1.277 23 C -0.111 4.111 24 H 0.087 0.913 25 C 0.112 3.888 26 C -0.128 4.128 27 C -0.066 4.066 28 C -0.172 4.172 29 C 0.096 3.904 30 N -0.475 5.475 31 C 0.109 3.891 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.135 0.865 49 H 0.135 0.865 50 H 0.155 0.845 51 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.517 17.462 -22.199 29.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.037 4.037 3 C -0.181 4.181 4 C 0.330 3.670 5 O -0.409 6.409 6 N -0.357 5.357 7 C -0.022 4.022 8 C -0.121 4.121 9 H 0.106 0.894 10 C -0.155 4.155 11 C -0.182 4.182 12 C 0.079 3.921 13 H 0.084 0.916 14 N -0.386 5.386 15 C -0.374 4.374 16 H 0.108 0.892 17 C -0.190 4.190 18 N -0.581 5.581 19 Si 0.713 3.287 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.203 1.203 23 C -0.131 4.131 24 H 0.105 0.895 25 C -0.010 4.010 26 C -0.130 4.130 27 C -0.092 4.092 28 C -0.192 4.192 29 C -0.061 4.061 30 N -0.183 5.183 31 C -0.048 4.048 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.195 0.805 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.101 0.899 48 H 0.153 0.847 49 H 0.153 0.847 50 H 0.173 0.827 51 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.578 17.126 -21.429 28.742 hybrid contribution 0.639 0.467 -0.662 1.032 sum -7.939 17.593 -22.092 29.336 Atomic orbital electron populations 1.22120 0.91538 1.03716 1.03208 1.19672 0.97499 0.96440 0.90049 1.21687 1.02207 0.91863 1.02362 1.19910 0.80263 0.80045 0.86822 1.90734 1.38010 1.64776 1.47403 1.49357 1.45884 1.10332 1.30094 1.22981 0.92995 0.90100 0.96128 1.22734 0.96703 0.93692 0.98949 0.89418 1.22403 0.97164 0.96221 0.99674 1.23178 0.99575 0.98130 0.97303 1.21108 0.89777 0.89345 0.91861 0.91633 1.42809 1.07361 1.62895 1.25531 1.19065 0.97551 1.24650 0.96099 0.89199 1.24662 0.97562 0.99913 0.96867 1.69697 1.31482 1.38839 1.18114 0.86584 0.85862 0.77294 0.79007 1.21040 1.21784 1.20276 1.23110 1.00027 0.95036 0.94963 0.89473 1.22671 1.00993 0.88063 0.89255 1.20559 0.99560 0.98206 0.94664 1.21359 0.97944 0.98518 0.91387 1.22128 0.99407 0.97939 0.99752 1.22870 0.93794 0.94418 0.95042 1.67801 1.23919 1.27691 0.98865 1.23026 0.92545 0.91179 0.98049 0.91256 0.91191 0.91030 0.91655 0.91851 0.91155 0.90470 0.90309 0.92180 0.91627 0.91668 0.91736 0.80541 0.93065 0.90254 0.89915 0.84701 0.84665 0.82730 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.08 37.16 0.30 -0.77 16 2 C -0.03 -0.31 0.60 -156.81 -0.09 -0.41 16 3 C -0.12 -1.12 7.65 37.15 0.28 -0.84 16 4 C 0.54 7.20 5.29 -10.99 -0.06 7.14 16 5 O -0.53 -9.12 16.30 5.55 0.09 -9.03 16 6 N -0.62 -7.81 2.20 -168.62 -0.37 -8.18 16 7 C 0.10 1.03 3.80 -2.08 -0.01 1.03 16 8 C -0.10 -1.21 3.77 -88.14 -0.33 -1.54 16 9 H 0.09 1.09 7.99 -51.93 -0.42 0.67 16 10 C -0.12 -1.38 6.36 -25.16 -0.16 -1.54 16 11 C -0.14 -2.25 6.57 -24.80 -0.16 -2.41 16 12 C 0.19 3.39 3.05 -66.37 -0.20 3.18 16 13 H 0.07 1.21 7.13 -51.93 -0.37 0.84 16 14 N -0.74 -17.03 5.01 -51.91 -0.26 -17.29 16 15 C -0.24 -6.73 10.44 -15.06 -0.16 -6.88 16 16 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 17 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 18 N -0.93 -29.25 13.97 55.49 0.78 -28.48 16 19 Si 0.88 22.23 27.74 -169.99 -4.71 17.51 16 20 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 21 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 22 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 23 C -0.11 -1.65 3.65 -88.15 -0.32 -1.97 16 24 H 0.09 1.41 7.79 -51.93 -0.40 1.00 16 25 C 0.11 1.63 6.56 -2.26 -0.01 1.62 16 26 C -0.13 -1.21 3.40 -104.48 -0.35 -1.56 16 27 C -0.07 -0.48 8.91 -39.28 -0.35 -0.83 16 28 C -0.17 -1.18 10.11 -39.44 -0.40 -1.58 16 29 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 30 N -0.47 -5.64 10.36 -13.25 -0.14 -5.77 16 31 C 0.11 1.28 8.34 -17.55 -0.15 1.14 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.36 6.91 -51.93 -0.36 0.00 16 34 H 0.07 0.52 4.94 -51.93 -0.26 0.26 16 35 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 36 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 37 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 38 H 0.08 0.71 4.61 -51.93 -0.24 0.47 16 39 H 0.08 0.73 7.18 -51.93 -0.37 0.36 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.70 7.18 -51.93 -0.37 0.32 16 42 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.36 8.28 5.46 -40.82 -0.22 8.06 16 45 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 46 H 0.08 1.15 7.20 -51.93 -0.37 0.78 16 47 H 0.08 1.36 7.92 -51.93 -0.41 0.94 16 48 H 0.14 0.64 7.20 -52.49 -0.38 0.26 16 49 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 50 H 0.16 0.98 8.06 -52.49 -0.42 0.55 16 51 H 0.16 2.13 5.79 -52.49 -0.30 1.83 16 LS Contribution 386.05 15.07 5.82 5.82 Total: -1.00 -33.54 386.05 -9.13 -42.67 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.86 Total: 8.27 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.47 Total: -5.51 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.01 Total: -59.72 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.09 Total: -9.03 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.54 -9.13 -42.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026298921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.935 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds