Wall clock time and date at job start Wed Apr 1 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47228 * 2 1 4 4 C 1.50703 * 109.47238 * 120.00071 * 2 1 3 5 5 O 1.21285 * 119.99858 * 239.24760 * 4 2 1 6 6 N 1.34771 * 119.99904 * 59.24845 * 4 2 1 7 7 C 1.48658 * 128.35644 * 355.38301 * 6 4 2 8 8 C 1.54468 * 104.34672 * 138.18324 * 7 6 4 9 9 H 1.09001 * 112.71122 * 263.25300 * 8 7 6 10 10 C 1.54150 * 108.79202 * 138.54622 * 8 7 6 11 11 C 1.54837 * 104.34587 * 224.04529 * 10 8 7 12 12 C 1.54834 * 102.73495 * 38.22344 * 11 10 8 13 13 H 1.09001 * 110.45880 * 80.49084 * 12 11 10 14 14 N 1.46500 * 110.56901 * 203.00597 * 12 11 10 15 15 C 1.36941 * 119.99603 * 269.99294 * 14 12 11 16 16 H 1.07994 * 120.00038 * 359.97438 * 15 14 12 17 17 C 1.38816 * 119.99730 * 179.97438 * 15 14 12 18 18 N 1.31612 * 119.99906 * 179.97438 * 17 15 14 19 19 Si 1.86804 * 119.99840 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47315 * 89.99838 * 19 17 15 21 21 H 1.48504 * 109.46804 * 209.99659 * 19 17 15 22 22 H 1.48495 * 109.46980 * 329.99623 * 19 17 15 23 23 C 1.54142 * 104.35002 * 321.77686 * 12 11 10 24 24 H 1.08997 * 111.89369 * 260.15000 * 23 12 11 25 25 C 1.48341 * 128.19493 * 175.28004 * 6 4 2 26 26 C 1.50707 * 109.46955 * 239.99836 * 2 1 3 27 27 C 1.38673 * 120.41232 * 52.84305 * 26 2 1 28 28 C 1.38631 * 118.41362 * 179.77958 * 27 26 2 29 29 C 1.38225 * 119.16246 * 0.51843 * 28 27 26 30 30 N 1.31855 * 120.76615 * 359.72008 * 29 28 27 31 31 C 1.31889 * 121.72451 * 0.02562 * 30 29 28 32 32 H 1.09000 * 109.46827 * 304.68526 * 1 2 3 33 33 H 1.09000 * 109.47067 * 64.68493 * 1 2 3 34 34 H 1.09000 * 109.46878 * 184.69026 * 1 2 3 35 35 H 1.09002 * 109.47476 * 180.02562 * 3 2 1 36 36 H 1.09002 * 109.47157 * 300.00028 * 3 2 1 37 37 H 1.08997 * 109.47276 * 59.99850 * 3 2 1 38 38 H 1.09004 * 110.44488 * 19.46989 * 7 6 4 39 39 H 1.09001 * 110.55466 * 256.96307 * 7 6 4 40 40 H 1.08993 * 110.45854 * 105.32718 * 10 8 7 41 41 H 1.09006 * 110.45731 * 342.75720 * 10 8 7 42 42 H 1.09008 * 110.75638 * 279.91557 * 11 10 8 43 43 H 1.08996 * 110.75838 * 156.53879 * 11 10 8 44 44 H 0.96994 * 120.00004 * 89.98867 * 14 12 11 45 45 H 0.97006 * 120.00122 * 179.97438 * 18 17 15 46 46 H 1.08998 * 110.46556 * 103.06189 * 25 6 4 47 47 H 1.09001 * 110.46457 * 340.60075 * 25 6 4 48 48 H 1.07997 * 120.79464 * 0.02562 * 27 26 2 49 49 H 1.08000 * 120.41811 * 180.25915 * 28 27 26 50 50 H 1.07999 * 119.61913 * 179.74915 * 29 28 27 51 51 H 1.08000 * 119.61978 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7409 -0.1250 2.0219 6 7 1.6944 -1.9962 1.4514 7 6 0.7714 -2.8557 0.6644 8 6 1.4883 -4.2221 0.5930 9 1 2.0490 -4.3554 -0.3322 10 6 0.4477 -5.3403 0.8006 11 6 1.1331 -6.3255 1.7789 12 6 1.8858 -5.3785 2.7454 13 1 1.2038 -4.9803 3.4966 14 7 3.0009 -6.0788 3.3876 15 6 2.8044 -6.7378 4.5718 16 1 1.8276 -6.7409 5.0325 17 6 3.8609 -7.4017 5.1801 18 7 3.6722 -8.0347 6.3185 19 14 5.5506 -7.3956 4.3836 20 1 6.3257 -6.2286 4.8759 21 1 6.2670 -8.6486 4.7329 22 1 5.4023 -7.3048 2.9089 23 6 2.4102 -4.2467 1.8400 24 1 3.4612 -4.3836 1.5856 25 6 2.1575 -2.8926 2.5389 26 6 2.0323 -0.7105 -1.2305 27 6 1.5853 -0.3364 -2.4888 28 6 2.0781 -1.0150 -3.5926 29 6 2.9839 -2.0417 -3.4030 30 7 3.3832 -2.3736 -2.1909 31 6 2.9394 -1.7469 -1.1187 32 1 -0.3633 0.5848 0.8451 33 1 -0.3633 0.4394 -0.9290 34 1 -0.3633 -1.0242 0.0840 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 0.6304 -2.4467 -0.3361 39 1 -0.1873 -2.9544 1.1735 40 1 0.2261 -5.8348 -0.1451 41 1 -0.4629 -4.9360 1.2427 42 1 1.8325 -6.9723 1.2490 43 1 0.3907 -6.9155 2.3162 44 1 3.8782 -6.0756 2.9740 45 1 4.4104 -8.4990 6.7435 46 1 1.3862 -2.9958 3.3021 47 1 3.0796 -2.5129 2.9790 48 1 0.8733 0.4671 -2.6063 49 1 1.7552 -0.7476 -4.5879 50 1 3.3695 -2.5780 -4.2574 51 1 3.2897 -2.0466 -0.1420 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026298921.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:11 Heat of formation + Delta-G solvation = 3.921065 kcal Electronic energy + Delta-G solvation = -31674.397602 eV Core-core repulsion = 27766.176903 eV Total energy + Delta-G solvation = -3908.220698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.36641 -40.82961 -39.87143 -36.87542 -36.64256 -35.02916 -33.11406 -33.00718 -31.24733 -30.96944 -29.98270 -28.22525 -26.81409 -26.05953 -24.66111 -24.39221 -24.12592 -22.37965 -21.56237 -20.65052 -19.88862 -19.35447 -18.69815 -17.80974 -17.48602 -17.11497 -16.80213 -16.52216 -15.92470 -15.88081 -15.41454 -15.24782 -15.06277 -14.79610 -14.72536 -14.52787 -14.12223 -14.03013 -13.97043 -13.73783 -13.62232 -13.29856 -13.13947 -13.10850 -13.06700 -12.75343 -12.65040 -12.37600 -12.27497 -12.18163 -12.12629 -11.91708 -11.82013 -11.58439 -11.49854 -11.42330 -11.00147 -10.80516 -10.69013 -10.34445 -9.90981 -9.83228 -9.28377 -8.03360 -5.35117 0.12719 0.36367 1.35186 1.37437 1.43971 1.45392 1.81230 2.46268 2.84155 3.16818 3.28543 3.35150 3.38585 3.58651 3.62384 3.69333 3.84386 3.90885 4.00446 4.06970 4.09521 4.14467 4.27408 4.30146 4.36881 4.42438 4.52370 4.57796 4.59899 4.66032 4.70545 4.76024 4.78552 4.82817 4.83459 4.84024 4.92580 4.99553 5.01527 5.07388 5.14184 5.21429 5.25150 5.26376 5.31234 5.37149 5.43853 5.53695 5.77426 5.77909 6.21825 6.48144 6.99865 7.05266 7.07334 7.85115 8.02063 9.18327 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014908 B = 0.003231 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.725737 B = 8663.896165 C = 8990.277704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.024 4.024 3 C -0.122 4.122 4 C 0.534 3.466 5 O -0.584 6.584 6 N -0.618 5.618 7 C 0.107 3.893 8 C -0.089 4.089 9 H 0.088 0.912 10 C -0.101 4.101 11 C -0.138 4.138 12 C 0.180 3.820 13 H 0.057 0.943 14 N -0.750 5.750 15 C -0.223 4.223 16 H 0.061 0.939 17 C -0.063 4.063 18 N -0.984 5.984 19 Si 0.947 3.053 20 H -0.284 1.284 21 H -0.295 1.295 22 H -0.255 1.255 23 C -0.103 4.103 24 H 0.071 0.929 25 C 0.114 3.886 26 C -0.129 4.129 27 C -0.058 4.058 28 C -0.157 4.157 29 C 0.082 3.918 30 N -0.510 5.510 31 C 0.085 3.915 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.039 0.961 36 H 0.098 0.902 37 H 0.061 0.939 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.362 0.638 45 H 0.257 0.743 46 H 0.079 0.921 47 H 0.054 0.946 48 H 0.171 0.829 49 H 0.173 0.827 50 H 0.174 0.826 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.739 19.443 -26.938 35.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 C -0.180 4.180 4 C 0.325 3.675 5 O -0.464 6.464 6 N -0.351 5.351 7 C -0.015 4.015 8 C -0.109 4.109 9 H 0.106 0.894 10 C -0.139 4.139 11 C -0.179 4.179 12 C 0.071 3.929 13 H 0.075 0.925 14 N -0.392 5.392 15 C -0.354 4.354 16 H 0.079 0.921 17 C -0.254 4.254 18 N -0.635 5.635 19 Si 0.776 3.224 20 H -0.211 1.211 21 H -0.222 1.222 22 H -0.180 1.180 23 C -0.123 4.123 24 H 0.089 0.911 25 C -0.009 4.009 26 C -0.132 4.132 27 C -0.084 4.084 28 C -0.176 4.176 29 C -0.074 4.074 30 N -0.219 5.219 31 C -0.072 4.072 32 H 0.086 0.914 33 H 0.121 0.879 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.117 0.883 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.195 0.805 45 H 0.065 0.935 46 H 0.097 0.903 47 H 0.072 0.928 48 H 0.189 0.811 49 H 0.190 0.810 50 H 0.191 0.809 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.848 19.126 -26.238 34.233 hybrid contribution 1.291 -0.102 0.773 1.508 sum -9.557 19.024 -25.465 33.192 Atomic orbital electron populations 1.22170 0.89005 1.04215 1.04968 1.19677 0.99288 0.95884 0.87951 1.21706 1.00673 0.91906 1.03680 1.20792 0.79282 0.79913 0.87541 1.90702 1.40255 1.65969 1.49450 1.49354 1.45957 1.10291 1.29456 1.23117 0.92730 0.88425 0.97202 1.22648 0.96090 0.95069 0.97079 0.89381 1.22351 0.97187 0.94774 0.99612 1.23026 0.99086 0.98250 0.97491 1.21381 0.88605 0.90490 0.92386 0.92465 1.42863 1.08897 1.62990 1.24498 1.19047 0.96088 1.23267 0.96957 0.92082 1.25403 1.01591 1.00656 0.97741 1.69863 1.32544 1.40905 1.20140 0.85517 0.80905 0.76766 0.79246 1.21094 1.22172 1.17973 1.22908 0.99778 0.93705 0.95918 0.91103 1.22464 0.99814 0.88549 0.90091 1.20498 0.99409 0.97662 0.95598 1.21746 0.97780 0.98836 0.89998 1.22518 0.97541 0.96161 1.01384 1.23328 0.94315 0.95384 0.94412 1.67701 1.25208 1.29009 0.99984 1.22641 0.94382 0.93082 0.97046 0.91441 0.87862 0.90822 0.94152 0.88314 0.91964 0.88362 0.88300 0.89843 0.89505 0.92874 0.92711 0.80488 0.93452 0.90284 0.92766 0.81112 0.80953 0.80864 0.85844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.08 71.98 0.58 -0.94 16 2 C -0.02 -0.41 0.60 -53.67 -0.03 -0.45 16 3 C -0.12 -2.00 7.65 71.98 0.55 -1.45 16 4 C 0.53 14.32 5.29 87.66 0.46 14.78 16 5 O -0.58 -21.11 16.30 -3.05 -0.05 -21.16 16 6 N -0.62 -15.41 2.20 -805.79 -1.78 -17.19 16 7 C 0.11 1.94 3.80 86.46 0.33 2.27 16 8 C -0.09 -1.98 3.77 -9.19 -0.03 -2.02 16 9 H 0.09 2.03 7.99 -2.39 -0.02 2.02 16 10 C -0.10 -2.11 6.36 31.61 0.20 -1.91 16 11 C -0.14 -4.31 6.57 31.85 0.21 -4.10 16 12 C 0.18 6.53 3.05 46.00 0.14 6.67 16 13 H 0.06 2.18 7.13 -2.39 -0.02 2.16 16 14 N -0.75 -35.19 5.01 -318.15 -1.59 -36.79 16 15 C -0.22 -12.72 10.44 84.03 0.88 -11.84 16 16 H 0.06 3.79 8.06 -2.91 -0.02 3.76 16 17 C -0.06 -3.76 5.50 84.86 0.47 -3.29 16 18 N -0.98 -64.04 13.97 21.65 0.30 -63.74 16 19 Si 0.95 47.24 27.74 68.60 1.90 49.14 16 20 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 21 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 22 H -0.25 -11.62 6.52 99.48 0.65 -10.98 16 23 C -0.10 -3.11 3.65 -9.19 -0.03 -3.14 16 24 H 0.07 2.39 7.79 -2.39 -0.02 2.37 16 25 C 0.11 3.46 6.56 86.52 0.57 4.03 16 26 C -0.13 -2.10 3.40 -19.77 -0.07 -2.16 16 27 C -0.06 -0.54 8.91 22.47 0.20 -0.34 16 28 C -0.16 -1.35 10.11 22.36 0.23 -1.12 16 29 C 0.08 1.19 11.18 84.69 0.95 2.14 16 30 N -0.51 -11.48 10.36 -195.84 -2.03 -13.51 16 31 C 0.08 1.93 8.34 84.67 0.71 2.63 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 0.42 6.91 -2.39 -0.02 0.40 16 34 H 0.07 0.74 4.94 -2.39 -0.01 0.73 16 35 H 0.04 0.85 8.09 -2.39 -0.02 0.83 16 36 H 0.10 0.88 7.92 -2.39 -0.02 0.86 16 37 H 0.06 1.11 8.11 -2.39 -0.02 1.09 16 38 H 0.10 1.45 4.61 -2.38 -0.01 1.44 16 39 H 0.10 1.47 7.18 -2.39 -0.02 1.45 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.09 1.50 7.18 -2.38 -0.02 1.48 16 42 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 43 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.36 16.80 5.46 -92.71 -0.51 16.29 16 45 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 46 H 0.08 2.39 7.20 -2.39 -0.02 2.37 16 47 H 0.05 1.94 7.92 -2.39 -0.02 1.92 16 48 H 0.17 0.37 7.20 -2.91 -0.02 0.35 16 49 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 50 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 51 H 0.12 3.53 5.79 -2.91 -0.02 3.51 16 Total: -1.00 -79.59 386.05 3.43 -76.16 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.38 Total: 27.32 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 6.30 Total: -0.23 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -5.10 Total: -131.23 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 1.90 Total: 49.14 kcal Total: -79.59 3.43 -76.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026298921.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.079 kcal (2) G-P(sol) polarization free energy of solvation -79.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds