Wall clock time and date at job start Wed Apr 1 2020 03:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47122 * 2 1 4 4 C 1.53004 * 109.46829 * 240.00210 * 2 1 3 5 5 C 1.50701 * 109.47294 * 120.00175 * 2 1 3 6 6 C 1.38625 * 120.32505 * 59.99789 * 5 2 1 7 7 C 1.38585 * 118.49137 * 180.02562 * 6 5 2 8 8 C 1.39311 * 119.05456 * 0.02562 * 7 6 5 9 9 C 1.48174 * 119.72212 * 179.97438 * 8 7 6 10 10 O 1.21522 * 119.99719 * 351.38139 * 9 8 7 11 11 N 1.34773 * 120.00069 * 171.38883 * 9 8 7 12 12 C 1.47167 * 120.71042 * 172.08773 * 11 9 8 13 13 C 1.53880 * 108.03217 * 132.72982 * 12 11 9 14 14 H 1.09005 * 112.09850 * 181.91019 * 13 12 11 15 15 C 1.54546 * 107.83344 * 305.86910 * 13 12 11 16 16 C 1.55860 * 104.09721 * 89.27568 * 15 13 12 17 17 C 1.54552 * 104.99637 * 359.97438 * 16 15 13 18 18 H 1.08995 * 112.67692 * 146.69236 * 17 16 15 19 19 C 1.47159 * 120.71157 * 352.05608 * 11 9 8 20 20 N 1.48309 * 107.20937 * 58.36219 * 13 12 11 21 21 C 1.36937 * 128.07846 * 106.70331 * 20 13 12 22 22 H 1.07993 * 119.99658 * 14.75358 * 21 20 13 23 23 C 1.38815 * 119.99998 * 194.75930 * 21 20 13 24 24 N 1.31618 * 119.99648 * 7.22971 * 23 21 20 25 25 Si 1.86801 * 120.00028 * 187.23239 * 23 21 20 26 26 H 1.48500 * 109.46995 * 59.99857 * 25 23 21 27 27 H 1.48491 * 109.46965 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46857 * 299.99771 * 25 23 21 29 29 N 1.32715 * 120.55743 * 0.25348 * 8 7 6 30 30 C 1.31529 * 121.64053 * 359.47448 * 29 8 7 31 31 H 1.09005 * 109.46359 * 299.99878 * 1 2 3 32 32 H 1.08992 * 109.47390 * 59.99628 * 1 2 3 33 33 H 1.08998 * 109.46826 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46813 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47007 * 300.00034 * 3 2 1 36 36 H 1.08996 * 109.47382 * 60.00122 * 3 2 1 37 37 H 1.09007 * 109.46781 * 299.99960 * 4 2 1 38 38 H 1.08996 * 109.47470 * 59.99862 * 4 2 1 39 39 H 1.08998 * 109.46870 * 180.02562 * 4 2 1 40 40 H 1.08009 * 120.75559 * 0.02562 * 6 5 2 41 41 H 1.07995 * 120.47463 * 180.02562 * 7 6 5 42 42 H 1.09003 * 109.74775 * 252.36892 * 12 11 9 43 43 H 1.09002 * 109.74719 * 13.09235 * 12 11 9 44 44 H 1.08995 * 110.36776 * 207.91504 * 15 13 12 45 45 H 1.09006 * 110.36228 * 330.23385 * 15 13 12 46 46 H 1.09000 * 110.28669 * 241.10118 * 16 15 13 47 47 H 1.08992 * 110.39077 * 118.93142 * 16 15 13 48 48 H 1.09004 * 109.74685 * 346.90541 * 19 11 9 49 49 H 1.09005 * 109.74525 * 107.63355 * 19 11 9 50 50 H 0.97004 * 119.99560 * 180.02562 * 24 23 21 51 51 H 1.07996 * 119.54357 * 180.26867 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.7016 -2.0375 1.4565 7 6 2.1839 -2.6534 2.6005 8 6 2.9794 -1.9212 3.4789 9 6 3.5024 -2.5648 4.7068 10 8 3.1135 -3.6710 5.0258 11 7 4.4094 -1.9234 5.4699 12 6 4.8102 -2.4667 6.7776 13 6 6.3465 -2.4299 6.8580 14 1 6.7184 -2.8507 7.7923 15 6 6.9031 -3.1715 5.6217 16 6 7.0314 -2.0590 4.5376 17 6 6.5403 -0.7675 5.2299 18 1 7.0650 0.1219 4.8811 19 6 5.0206 -0.6650 5.0132 20 7 6.7618 -1.0179 6.6750 21 6 7.2382 -0.1485 7.6196 22 1 7.5733 -0.5211 8.5762 23 6 7.2903 1.2117 7.3475 24 7 6.7526 1.6828 6.2424 25 14 8.1235 2.3735 8.5498 26 1 9.5479 1.9843 8.7077 27 1 8.0450 3.7626 8.0310 28 1 7.4405 2.2969 9.8662 29 7 3.2683 -0.6504 3.2280 30 6 2.8282 -0.0431 2.1476 31 1 -0.3632 0.5139 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6766 -1.7489 -1.2493 38 1 1.6766 -0.2074 -2.1393 39 1 3.1300 -0.7216 -1.2491 40 1 1.0822 -2.5793 0.7569 41 1 1.9463 -3.6863 2.8081 42 1 4.3848 -1.8579 7.5754 43 1 4.4609 -3.4949 6.8719 44 1 7.8790 -3.6023 5.8452 45 1 6.2089 -3.9484 5.3011 46 1 6.4008 -2.2927 3.6798 47 1 8.0701 -1.9509 4.2256 48 1 4.8088 -0.5158 3.9544 49 1 4.6215 0.1691 5.5904 50 1 6.7894 2.6333 6.0521 51 1 3.0875 0.9910 1.9749 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029310263.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:09 Heat of formation + Delta-G solvation = 46.242803 kcal Electronic energy + Delta-G solvation = -31598.002651 eV Core-core repulsion = 27691.617161 eV Total energy + Delta-G solvation = -3906.385490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.88291 -39.56567 -37.77392 -36.81991 -33.73136 -32.51619 -32.09743 -30.88786 -30.07242 -29.12712 -27.80505 -27.53741 -26.34449 -24.55508 -23.75686 -23.24621 -23.08914 -20.46326 -19.59662 -19.52370 -18.71503 -17.54710 -16.75976 -16.09660 -15.57265 -15.45172 -15.24050 -14.67870 -14.63063 -14.48966 -14.04784 -13.97495 -13.72094 -13.47828 -13.32488 -13.06047 -12.85981 -12.57863 -12.54901 -12.45213 -12.23110 -11.95341 -11.69579 -11.59004 -11.52293 -11.28591 -11.26243 -11.06000 -10.91087 -10.81663 -10.72442 -10.27162 -10.06328 -9.86255 -9.80266 -9.68332 -9.54240 -9.44862 -9.02078 -8.93762 -8.41090 -7.92158 -6.73577 -5.76923 -3.12485 0.76805 1.26047 3.06907 3.39361 3.44359 3.44629 3.56486 4.01394 4.23059 4.43805 4.45549 4.50252 4.71584 4.84327 4.90810 4.98346 5.12362 5.29008 5.32885 5.34792 5.39575 5.43615 5.48901 5.59433 5.60508 5.69955 5.73558 5.77501 5.79904 5.83382 5.88408 5.92383 6.01518 6.04465 6.08598 6.19591 6.20966 6.34267 6.46110 6.48301 6.57812 6.63551 6.73456 6.85532 6.92101 7.00571 7.30231 7.46292 7.55917 7.74035 7.87947 8.17809 8.23305 8.69373 9.12671 9.74136 10.52084 11.34992 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.003479 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.969366 B = 8047.415771 C = 9395.521156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.026 4.026 3 C -0.149 4.149 4 C -0.139 4.139 5 C -0.110 4.110 6 C -0.082 4.082 7 C -0.114 4.114 8 C 0.084 3.916 9 C 0.555 3.445 10 O -0.563 6.563 11 N -0.565 5.565 12 C 0.098 3.902 13 C 0.135 3.865 14 H 0.076 0.924 15 C -0.125 4.125 16 C -0.134 4.134 17 C 0.162 3.838 18 H 0.122 0.878 19 C 0.089 3.911 20 N -0.586 5.586 21 C -0.224 4.224 22 H 0.075 0.925 23 C -0.003 4.003 24 N -0.913 5.913 25 Si 0.911 3.089 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 N -0.431 5.431 30 C 0.091 3.909 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.135 0.865 41 H 0.144 0.856 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.051 0.949 48 H 0.113 0.887 49 H 0.077 0.923 50 H 0.254 0.746 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.253 -3.825 -14.887 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.206 4.206 4 C -0.196 4.196 5 C -0.112 4.112 6 C -0.108 4.108 7 C -0.135 4.135 8 C -0.054 4.054 9 C 0.341 3.659 10 O -0.444 6.444 11 N -0.294 5.294 12 C -0.026 4.026 13 C 0.026 3.974 14 H 0.094 0.906 15 C -0.164 4.164 16 C -0.173 4.173 17 C 0.054 3.946 18 H 0.140 0.860 19 C -0.034 4.034 20 N -0.307 5.307 21 C -0.352 4.352 22 H 0.093 0.907 23 C -0.200 4.200 24 N -0.559 5.559 25 Si 0.742 3.258 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 N -0.142 5.142 30 C -0.068 4.068 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.153 0.847 41 H 0.162 0.838 42 H 0.082 0.918 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.130 0.870 49 H 0.095 0.905 50 H 0.064 0.936 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.837 -3.654 -13.985 17.485 hybrid contribution -0.168 0.263 0.092 0.325 sum -10.006 -3.391 -13.893 17.454 Atomic orbital electron populations 1.21901 0.93455 1.02103 1.02156 1.19480 0.95803 0.95297 0.92086 1.22001 1.01702 0.94537 1.02400 1.21903 1.01528 1.00107 0.96087 1.21020 0.98201 0.94776 0.97182 1.21358 0.98510 0.94200 0.96719 1.22052 0.96251 1.01678 0.93524 1.21375 0.97211 0.90763 0.96005 1.17929 0.80255 0.84860 0.82819 1.90697 1.61623 1.19357 1.72699 1.48158 1.38248 1.24897 1.18069 1.22451 0.97989 0.98449 0.83750 1.21925 0.90908 0.88035 0.96529 0.90582 1.22753 0.99607 0.97251 0.96804 1.22886 0.99724 0.97702 0.97017 1.22072 0.92608 0.95755 0.84127 0.86020 1.23433 0.94952 0.83106 1.01931 1.45185 1.74064 1.06933 1.04484 1.18964 1.34095 0.86825 0.95328 0.90745 1.24811 1.00720 0.96422 0.98080 1.69807 1.47887 1.12857 1.25357 0.86215 0.79270 0.80065 0.80256 1.21278 1.21628 1.21207 1.68176 1.17973 1.09167 1.18855 1.23098 0.93737 1.00450 0.89503 0.92312 0.92097 0.92450 0.91751 0.92053 0.91843 0.92455 0.92105 0.92232 0.84679 0.83804 0.91814 0.90735 0.92767 0.92587 0.93554 0.92997 0.86999 0.90473 0.93566 0.81933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.29 37.16 0.31 -0.67 16 2 C -0.03 -0.21 0.86 -155.66 -0.13 -0.34 16 3 C -0.15 -1.12 7.14 37.16 0.27 -0.85 16 4 C -0.14 -0.98 8.29 37.16 0.31 -0.67 16 5 C -0.11 -1.18 4.77 -104.36 -0.50 -1.67 16 6 C -0.08 -0.89 8.84 -39.31 -0.35 -1.24 16 7 C -0.11 -1.58 9.63 -39.05 -0.38 -1.96 16 8 C 0.08 1.43 6.56 -83.01 -0.54 0.89 16 9 C 0.56 11.02 7.66 -12.18 -0.09 10.93 16 10 O -0.56 -11.98 15.83 5.35 0.08 -11.90 16 11 N -0.57 -11.67 2.26 -172.54 -0.39 -12.06 16 12 C 0.10 2.02 5.92 -3.22 -0.02 2.00 16 13 C 0.13 2.82 4.27 -65.66 -0.28 2.54 16 14 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 15 C -0.12 -2.40 6.31 -24.39 -0.15 -2.56 16 16 C -0.13 -2.69 6.22 -24.39 -0.15 -2.85 16 17 C 0.16 3.72 3.15 -65.67 -0.21 3.51 16 18 H 0.12 3.15 6.23 -51.93 -0.32 2.82 16 19 C 0.09 1.92 5.08 -3.24 -0.02 1.91 16 20 N -0.59 -14.34 2.81 -152.61 -0.43 -14.77 16 21 C -0.22 -5.98 10.38 -15.06 -0.16 -6.14 16 22 H 0.07 1.94 7.84 -52.49 -0.41 1.53 16 23 C 0.00 -0.09 5.44 -17.43 -0.09 -0.19 16 24 N -0.91 -25.01 10.41 55.49 0.58 -24.43 16 25 Si 0.91 21.43 29.56 -169.99 -5.02 16.40 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 N -0.43 -7.11 6.17 -9.80 -0.06 -7.17 16 30 C 0.09 1.18 10.15 -17.56 -0.18 1.01 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.38 7.45 -51.93 -0.39 0.00 16 34 H 0.06 0.50 7.53 -51.93 -0.39 0.10 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.49 7.52 -51.93 -0.39 0.10 16 37 H 0.06 0.38 7.45 -51.92 -0.39 0.00 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.14 1.09 7.24 -52.48 -0.38 0.71 16 41 H 0.14 1.90 7.67 -52.49 -0.40 1.50 16 42 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 43 H 0.07 1.46 7.08 -51.93 -0.37 1.09 16 44 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.06 1.05 7.84 -51.93 -0.41 0.65 16 46 H 0.05 0.89 7.84 -51.93 -0.41 0.48 16 47 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.11 2.28 4.46 -68.37 -0.30 1.98 16 49 H 0.08 1.94 7.92 -51.93 -0.41 1.53 16 50 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 51 H 0.16 1.84 5.91 -52.49 -0.31 1.53 16 LS Contribution 388.87 15.07 5.86 5.86 Total: -1.00 -29.94 388.87 -9.97 -39.91 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.22 Total: 4.52 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -2.37 Total: 3.64 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.30 Total: -58.43 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.94 -9.97 -39.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029310263.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.150 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds