Wall clock time and date at job start Wed Apr 1 2020 02:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50693 * 109.47243 * 2 1 4 4 C 1.38637 * 120.47054 * 262.95673 * 3 2 1 5 5 C 1.38586 * 118.49093 * 179.97438 * 4 3 2 6 6 C 1.38596 * 119.34974 * 359.97438 * 5 4 3 7 7 N 1.31497 * 120.90434 * 359.74516 * 6 5 4 8 8 C 1.32744 * 121.64094 * 0.53145 * 7 6 5 9 9 C 1.48166 * 119.72458 * 179.74907 * 8 7 6 10 10 O 1.21513 * 120.00268 * 253.20142 * 9 8 7 11 11 N 1.34780 * 120.00077 * 73.20154 * 9 8 7 12 12 C 1.46931 * 120.55163 * 184.82259 * 11 9 8 13 13 C 1.53343 * 108.68262 * 125.62992 * 12 11 9 14 14 C 1.52102 * 109.44747 * 53.30263 * 13 12 11 15 15 C 1.54395 * 110.50811 * 64.08608 * 14 13 12 16 16 C 1.54455 * 102.86910 * 83.33477 * 15 14 13 17 17 N 1.47084 * 107.29654 * 21.50422 * 16 15 14 18 18 C 1.36938 * 125.62786 * 180.96854 * 17 16 15 19 19 H 1.07997 * 119.99910 * 179.69769 * 18 17 16 20 20 C 1.38809 * 120.00290 * 359.69730 * 18 17 16 21 21 N 1.31619 * 120.00216 * 213.35188 * 20 18 17 22 22 Si 1.86802 * 119.99597 * 33.34705 * 20 18 17 23 23 H 1.48500 * 109.47497 * 271.58973 * 22 20 18 24 24 H 1.48496 * 109.47360 * 31.59265 * 22 20 18 25 25 H 1.48504 * 109.46764 * 151.59249 * 22 20 18 26 26 C 1.47572 * 108.74466 * 1.23109 * 17 16 15 27 27 C 1.52105 * 111.60007 * 300.69615 * 14 13 12 28 28 C 1.46928 * 120.54901 * 4.79979 * 11 9 8 29 29 H 1.09004 * 109.46540 * 60.00476 * 1 2 3 30 30 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47391 * 300.00258 * 1 2 3 32 32 H 1.09003 * 109.47288 * 239.99847 * 2 1 3 33 33 H 1.08998 * 109.46720 * 119.99941 * 2 1 3 34 34 H 1.08000 * 120.75056 * 359.95169 * 4 3 2 35 35 H 1.08002 * 120.32220 * 180.02562 * 5 4 3 36 36 H 1.08004 * 119.54823 * 180.02562 * 6 5 4 37 37 H 1.08994 * 109.60112 * 5.86861 * 12 11 9 38 38 H 1.09002 * 109.60128 * 245.38828 * 12 11 9 39 39 H 1.09004 * 109.47702 * 293.30743 * 13 12 11 40 40 H 1.09007 * 109.47453 * 173.29815 * 13 12 11 41 41 H 1.09002 * 110.73282 * 324.99254 * 15 14 13 42 42 H 1.08995 * 110.73434 * 201.67689 * 15 14 13 43 43 H 1.09000 * 109.88057 * 262.08402 * 16 15 14 44 44 H 1.08998 * 109.88275 * 140.93144 * 16 15 14 45 45 H 0.96995 * 120.00010 * 5.04292 * 21 20 18 46 46 H 1.09000 * 110.37818 * 95.26008 * 26 17 16 47 47 H 1.08998 * 110.37881 * 217.61140 * 26 17 16 48 48 H 1.08995 * 109.47765 * 179.29094 * 27 14 13 49 49 H 1.09007 * 109.47283 * 299.30878 * 27 14 13 50 50 H 1.08999 * 109.60221 * 354.13053 * 28 11 9 51 51 H 1.08998 * 109.60024 * 114.61028 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.4048 2.0347 -1.1859 5 6 2.8605 3.3426 -1.1384 6 6 2.9296 3.9940 0.0830 7 7 2.5647 3.3897 1.1923 8 6 2.1277 2.1362 1.1911 9 6 1.7327 1.4947 2.4669 10 8 2.4454 0.6470 2.9670 11 7 0.5828 1.8513 3.0728 12 6 0.2304 1.3014 4.3890 13 6 -0.0504 2.4645 5.3481 14 6 -1.0881 3.3900 4.7316 15 6 -2.4357 2.6556 4.5629 16 6 -3.0797 2.7931 5.9600 17 7 -2.4388 3.9371 6.6262 18 6 -2.7152 4.3803 7.8921 19 1 -2.1841 5.2301 8.2947 20 6 -3.6781 3.7374 8.6578 21 7 -4.4142 4.4265 9.5038 22 14 -3.9291 1.8942 8.4875 23 1 -4.9155 1.6264 7.4101 24 1 -2.6363 1.2479 8.1468 25 1 -4.4354 1.3430 9.7702 26 6 -1.4533 4.5324 5.7031 27 6 -0.6166 3.9511 3.3988 28 6 -0.3389 2.7967 2.4284 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3417 1.5055 -2.1252 35 1 3.1580 3.8496 -2.0445 36 1 3.2839 5.0135 0.1236 37 1 1.0594 0.7052 4.7701 38 1 -0.6598 0.6788 4.2988 39 1 0.8709 3.0190 5.5264 40 1 -0.4278 2.0734 6.2930 41 1 -2.2750 1.6067 4.3136 42 1 -3.0490 3.1437 3.8055 43 1 -2.9093 1.8847 6.5378 44 1 -4.1496 2.9750 5.8587 45 1 -4.3354 5.3925 9.5400 46 1 -1.8971 5.3675 5.1611 47 1 -0.5701 4.8608 6.2510 48 1 -1.3892 4.5976 2.9829 49 1 0.2968 4.5267 3.5495 50 1 0.1148 3.1861 1.5170 51 1 -1.2730 2.2896 2.1867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035202015.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:14 Heat of formation + Delta-G solvation = 28.724744 kcal Electronic energy + Delta-G solvation = -31513.826600 eV Core-core repulsion = 27606.681470 eV Total energy + Delta-G solvation = -3907.145130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.29263 -39.97442 -38.56445 -36.02816 -35.09291 -33.25927 -32.60002 -31.28948 -31.11800 -30.14038 -28.97582 -27.26077 -25.28973 -24.62360 -23.73440 -23.10691 -22.80122 -21.80805 -20.60165 -20.11405 -18.53441 -17.74015 -17.25956 -16.89412 -16.59906 -16.02532 -15.41966 -15.15097 -15.05478 -14.75465 -14.43733 -14.18095 -14.09035 -13.79109 -13.63652 -13.55069 -13.37621 -13.16293 -12.95389 -12.94279 -12.53836 -12.49642 -12.34271 -11.83479 -11.72735 -11.40752 -11.32739 -11.16071 -11.07007 -10.88635 -10.54042 -10.39084 -10.31525 -10.25912 -10.11373 -9.90549 -9.69879 -9.58847 -9.30431 -9.15292 -8.67925 -8.33088 -7.03209 -6.34664 -3.07549 0.50996 0.83603 2.31327 2.77421 3.31017 3.46823 3.55269 3.71881 3.91931 4.16700 4.33428 4.52639 4.53946 4.67385 4.72327 4.80642 4.84348 4.88058 4.96153 4.98734 5.02590 5.06604 5.15445 5.27333 5.30771 5.36261 5.42683 5.47127 5.52488 5.57920 5.66224 5.71970 5.72267 5.78429 5.84555 5.85287 5.87908 5.96244 6.03652 6.10802 6.19841 6.26934 6.36248 6.38245 6.54807 6.58275 6.69680 6.78959 6.87992 7.22029 7.47554 7.75957 7.92854 8.37972 9.06819 9.65383 10.32905 11.14463 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.021341 B = 0.002930 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.722074 B = 9554.159452 C =10046.461219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 C -0.096 4.096 4 C -0.076 4.076 5 C -0.158 4.158 6 C 0.096 3.904 7 N -0.452 5.452 8 C 0.100 3.900 9 C 0.581 3.419 10 O -0.532 6.532 11 N -0.591 5.591 12 C 0.111 3.889 13 C -0.113 4.113 14 C -0.073 4.073 15 C -0.122 4.122 16 C 0.114 3.886 17 N -0.608 5.608 18 C -0.335 4.335 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.908 5.908 22 Si 1.048 2.952 23 H -0.295 1.295 24 H -0.292 1.292 25 H -0.300 1.300 26 C 0.150 3.850 27 C -0.114 4.114 28 C 0.114 3.886 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.163 0.837 37 H 0.092 0.908 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.030 0.970 44 H 0.036 0.964 45 H 0.264 0.736 46 H 0.025 0.975 47 H 0.041 0.959 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.076 0.924 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.178 -5.331 -26.317 29.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.131 4.131 3 C -0.099 4.099 4 C -0.102 4.102 5 C -0.178 4.178 6 C -0.063 4.063 7 N -0.161 5.161 8 C -0.040 4.040 9 C 0.367 3.633 10 O -0.408 6.408 11 N -0.323 5.323 12 C -0.010 4.010 13 C -0.151 4.151 14 C -0.075 4.075 15 C -0.159 4.159 16 C -0.011 4.011 17 N -0.335 5.335 18 C -0.462 4.462 19 H 0.096 0.904 20 C -0.214 4.214 21 N -0.547 5.547 22 Si 0.881 3.119 23 H -0.223 1.223 24 H -0.220 1.220 25 H -0.228 1.228 26 C 0.024 3.976 27 C -0.153 4.153 28 C -0.009 4.009 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.158 0.842 35 H 0.157 0.843 36 H 0.180 0.820 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.054 0.946 45 H 0.074 0.926 46 H 0.043 0.957 47 H 0.059 0.941 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.724 -6.581 -24.481 27.930 hybrid contribution 0.876 1.039 -1.507 2.029 sum 12.601 -5.542 -25.988 29.408 Atomic orbital electron populations 1.21783 0.93972 1.02535 1.02326 1.20647 0.96743 0.91435 1.04235 1.20827 0.98661 0.97714 0.92692 1.21484 0.96045 0.94799 0.97847 1.22331 1.00057 0.95498 0.99875 1.22853 0.95926 1.00132 0.87375 1.67702 1.08993 1.08175 1.31275 1.20904 0.98687 0.91001 0.93389 1.17890 0.80929 0.81592 0.82923 1.90791 1.52573 1.32600 1.64787 1.48029 1.19894 1.44511 1.19855 1.21827 1.01423 0.96433 0.81315 1.21658 0.98769 0.95938 0.98711 1.21149 0.94644 0.96908 0.94753 1.22640 0.95701 0.99721 0.97879 1.21651 0.96593 0.91466 0.91405 1.44817 1.43530 1.32440 1.12711 1.19947 1.21319 1.14128 0.90777 0.90388 1.25573 0.93280 1.05809 0.96773 1.70885 1.33617 1.08556 1.41688 0.84132 0.75124 0.78035 0.74602 1.22286 1.21957 1.22840 1.21518 0.92382 0.93064 0.90625 1.21700 1.02004 0.96844 0.94735 1.21778 0.92972 0.90376 0.95798 0.92398 0.91690 0.92318 0.90276 0.89575 0.84237 0.84265 0.82020 0.88947 0.90893 0.91581 0.89481 0.91548 0.91497 0.95241 0.94565 0.92577 0.95732 0.94058 0.90549 0.91081 0.90588 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.87 37.16 0.37 -0.77 16 2 C -0.09 -0.78 5.57 -27.89 -0.16 -0.94 16 3 C -0.10 -0.92 5.18 -104.09 -0.54 -1.46 16 4 C -0.08 -0.53 9.83 -39.31 -0.39 -0.92 16 5 C -0.16 -1.01 10.11 -39.32 -0.40 -1.41 16 6 C 0.10 0.80 11.18 -17.56 -0.20 0.61 16 7 N -0.45 -5.37 9.89 -9.80 -0.10 -5.47 16 8 C 0.10 1.21 4.65 -83.01 -0.39 0.83 16 9 C 0.58 8.25 5.78 -12.18 -0.07 8.18 16 10 O -0.53 -9.12 15.77 5.35 0.08 -9.03 16 11 N -0.59 -7.65 2.87 -173.57 -0.50 -8.15 16 12 C 0.11 1.53 6.11 -3.63 -0.02 1.51 16 13 C -0.11 -1.76 4.87 -27.01 -0.13 -1.89 16 14 C -0.07 -1.14 0.55 -153.99 -0.08 -1.23 16 15 C -0.12 -1.94 4.92 -25.24 -0.12 -2.06 16 16 C 0.11 2.45 4.55 -2.96 -0.01 2.44 16 17 N -0.61 -14.77 3.35 -170.18 -0.57 -15.34 16 18 C -0.34 -9.61 10.39 -15.06 -0.16 -9.77 16 19 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 20 C -0.01 -0.38 5.41 -17.43 -0.09 -0.48 16 21 N -0.91 -28.50 13.70 55.49 0.76 -27.74 16 22 Si 1.05 26.69 24.73 -169.99 -4.20 22.48 16 23 H -0.29 -7.13 6.74 56.52 0.38 -6.75 16 24 H -0.29 -7.03 6.50 56.52 0.37 -6.67 16 25 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 26 C 0.15 2.97 6.16 -2.75 -0.02 2.95 16 27 C -0.11 -1.44 4.84 -27.01 -0.13 -1.57 16 28 C 0.11 1.27 5.45 -3.63 -0.02 1.25 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.53 6.92 -51.93 -0.36 0.17 16 32 H 0.08 0.50 8.05 -51.93 -0.42 0.08 16 33 H 0.09 0.92 6.81 -51.93 -0.35 0.57 16 34 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 35 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.09 1.34 7.02 -51.93 -0.36 0.97 16 38 H 0.07 0.93 6.55 -51.93 -0.34 0.59 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.56 7.82 -51.93 -0.41 1.16 16 41 H 0.07 0.93 6.17 -51.93 -0.32 0.61 16 42 H 0.07 0.97 7.98 -51.93 -0.41 0.56 16 43 H 0.03 0.67 4.09 -51.93 -0.21 0.46 16 44 H 0.04 0.84 7.44 -51.93 -0.39 0.45 16 45 H 0.26 8.20 8.73 -40.82 -0.36 7.84 16 46 H 0.02 0.49 8.00 -51.93 -0.42 0.07 16 47 H 0.04 0.84 8.03 -51.93 -0.42 0.42 16 48 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 49 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 50 H 0.08 0.81 6.01 -51.93 -0.31 0.50 16 51 H 0.07 0.73 7.56 -51.93 -0.39 0.33 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -34.55 386.15 -9.39 -43.93 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -8.12 Total: -1.78 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.56 Total: -4.73 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.40 Total: -56.69 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 14 Polarization: 26.69 SS G_CDS: -4.20 Total: 22.48 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.55 -9.39 -43.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035202015.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.658 kcal (2) G-P(sol) polarization free energy of solvation -34.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds