Wall clock time and date at job start Wed Apr 1 2020 02:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50694 * 109.47281 * 2 1 4 4 C 1.38357 * 120.34971 * 270.02263 * 3 2 1 5 5 N 1.31924 * 121.07626 * 179.97438 * 4 3 2 6 6 C 1.31689 * 121.88397 * 359.74570 * 5 4 3 7 7 C 1.39521 * 120.56812 * 0.54499 * 6 5 4 8 8 C 1.47833 * 120.56310 * 179.72162 * 7 6 5 9 9 O 1.21553 * 120.00072 * 209.20072 * 8 7 6 10 10 N 1.34775 * 120.00221 * 29.20150 * 8 7 6 11 11 C 1.46935 * 120.54952 * 5.49258 * 10 8 7 12 12 C 1.53345 * 108.68557 * 125.63034 * 11 10 8 13 13 C 1.52107 * 109.44152 * 53.30519 * 12 11 10 14 14 C 1.54382 * 110.51198 * 64.08978 * 13 12 11 15 15 C 1.54460 * 102.86948 * 83.32833 * 14 13 12 16 16 N 1.47074 * 107.29430 * 21.50973 * 15 14 13 17 17 C 1.36941 * 125.62856 * 180.96670 * 16 15 14 18 18 H 1.07994 * 120.00281 * 176.52728 * 17 16 15 19 19 C 1.38814 * 119.99522 * 356.52366 * 17 16 15 20 20 N 1.31625 * 119.99981 * 159.34644 * 19 17 16 21 21 Si 1.86799 * 120.00131 * 339.34060 * 19 17 16 22 22 H 1.48505 * 109.46909 * 185.53224 * 21 19 17 23 23 H 1.48501 * 109.47459 * 305.53165 * 21 19 17 24 24 H 1.48500 * 109.46931 * 65.53353 * 21 19 17 25 25 C 1.47573 * 108.74827 * 1.22627 * 16 15 14 26 26 C 1.52111 * 111.59763 * 300.69089 * 13 12 11 27 27 C 1.46927 * 120.55605 * 185.47156 * 10 8 7 28 28 C 1.38358 * 120.34754 * 90.00044 * 3 2 1 29 29 H 1.08991 * 109.47095 * 59.99814 * 1 2 3 30 30 H 1.08995 * 109.46913 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46194 * 299.99638 * 1 2 3 32 32 H 1.09006 * 109.46766 * 240.00055 * 2 1 3 33 33 H 1.09000 * 109.47148 * 120.00448 * 2 1 3 34 34 H 1.07999 * 119.45920 * 359.97438 * 4 3 2 35 35 H 1.08005 * 119.72282 * 180.26932 * 6 5 4 36 36 H 1.09003 * 109.60578 * 5.87195 * 11 10 8 37 37 H 1.09000 * 109.60392 * 245.38670 * 11 10 8 38 38 H 1.08995 * 109.47328 * 293.31121 * 12 11 10 39 39 H 1.08999 * 109.47712 * 173.29588 * 12 11 10 40 40 H 1.09007 * 110.73383 * 324.98683 * 14 13 12 41 41 H 1.08999 * 110.73671 * 201.67808 * 14 13 12 42 42 H 1.08998 * 109.88087 * 262.08172 * 15 14 13 43 43 H 1.08999 * 109.87407 * 140.93437 * 15 14 13 44 44 H 0.97003 * 119.99276 * 5.01329 * 20 19 17 45 45 H 1.09006 * 110.37500 * 95.25973 * 25 16 15 46 46 H 1.09000 * 110.38229 * 217.61135 * 25 16 15 47 47 H 1.09003 * 109.47277 * 179.29495 * 26 13 12 48 48 H 1.09001 * 109.47637 * 299.31298 * 26 13 12 49 49 H 1.09000 * 109.59795 * 354.13124 * 27 10 8 50 50 H 1.09001 * 109.60089 * 114.60451 * 27 10 8 51 51 H 1.07996 * 120.85511 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2650 2.0800 -1.1940 5 7 2.7043 3.3239 -1.2107 6 6 2.9361 3.9946 -0.1014 7 6 2.7323 3.3990 1.1437 8 6 2.9984 4.1501 2.3889 9 8 3.3391 3.5585 3.3946 10 7 2.8633 5.4909 2.4091 11 6 2.3375 6.2063 1.2383 12 6 1.1450 7.0630 1.6807 13 6 1.5607 7.9448 2.8482 14 6 2.6512 8.9454 2.4090 15 6 1.8316 10.0925 1.7779 16 7 0.4663 10.0025 2.3174 17 6 -0.5759 10.8292 1.9924 18 1 -1.5583 10.6462 2.4020 19 6 -0.3696 11.9025 1.1367 20 7 -1.3882 12.4446 0.5035 21 14 1.3537 12.5776 0.8839 22 1 1.2888 13.7955 0.0365 23 1 1.9487 12.9217 2.2002 24 1 2.1935 11.5525 0.2137 25 6 0.4064 8.8781 3.2713 26 6 2.0412 7.1180 4.0311 27 6 3.2388 6.2616 3.6023 28 6 2.2655 2.0798 1.1940 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8934 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.0840 1.5679 -2.1275 35 1 3.2913 5.0132 -0.1558 36 1 2.0122 5.4875 0.4862 37 1 3.1143 6.8479 0.8225 38 1 0.3258 6.4137 1.9892 39 1 0.8194 7.6892 0.8501 40 1 3.3146 8.4940 1.6712 41 1 3.2162 9.3030 3.2698 42 1 1.8100 9.9799 0.6940 43 1 2.2727 11.0531 2.0441 44 1 -2.2911 12.1426 0.6894 45 1 0.5582 9.2359 4.2897 46 1 -0.5493 8.3605 3.1885 47 1 2.3413 7.7828 4.8411 48 1 1.2345 6.4696 4.3729 49 1 3.5077 5.5792 4.4086 50 1 4.0853 6.9074 3.3691 51 1 2.0924 1.5892 2.1404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035205021.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:23:18 Heat of formation + Delta-G solvation = 23.334714 kcal Electronic energy + Delta-G solvation = -30867.626431 eV Core-core repulsion = 26960.247572 eV Total energy + Delta-G solvation = -3907.378859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.22990 -41.04067 -39.84448 -37.48423 -35.84343 -34.97684 -33.77814 -32.82755 -32.17721 -30.64882 -30.63005 -28.78901 -26.20812 -25.62788 -25.06800 -24.49980 -23.83170 -22.86137 -22.14385 -21.09965 -19.91286 -19.05395 -18.53417 -17.93319 -17.54590 -17.17713 -16.80437 -16.69013 -16.35864 -15.62059 -15.52600 -15.17705 -15.10785 -14.99407 -14.79941 -14.70098 -14.60513 -14.26957 -14.18093 -13.90638 -13.66048 -13.59193 -13.28811 -13.02820 -12.94828 -12.82612 -12.58734 -12.46010 -12.23284 -11.93205 -11.90381 -11.70866 -11.61860 -11.52830 -11.34757 -11.15545 -10.89664 -10.83424 -10.57120 -10.47708 -9.96680 -9.70532 -9.09495 -8.63272 -5.40801 -0.39613 0.10694 1.41339 1.52528 1.60620 1.73374 1.85376 2.55846 2.68000 3.10542 3.16744 3.36311 3.43289 3.52881 3.66145 3.69498 3.76216 3.76797 3.87365 4.03443 4.04756 4.08559 4.25230 4.29767 4.36708 4.41395 4.46461 4.48433 4.52080 4.56950 4.68122 4.72652 4.80031 4.81054 4.83544 4.88408 4.90194 4.92186 5.02538 5.05687 5.07372 5.09875 5.25388 5.29920 5.34028 5.36074 5.38200 5.50527 5.54803 5.57913 6.11163 6.22230 6.78604 6.85994 6.95586 7.49426 8.13977 8.88778 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015513 B = 0.002811 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.448333 B = 9958.587015 C =10645.210588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.077 4.077 3 C -0.135 4.135 4 C 0.119 3.881 5 N -0.502 5.502 6 C 0.113 3.887 7 C -0.194 4.194 8 C 0.565 3.435 9 O -0.573 6.573 10 N -0.595 5.595 11 C 0.090 3.910 12 C -0.109 4.109 13 C -0.058 4.058 14 C -0.111 4.111 15 C 0.101 3.899 16 N -0.630 5.630 17 C -0.311 4.311 18 H 0.040 0.960 19 C -0.085 4.085 20 N -0.964 5.964 21 Si 1.108 2.892 22 H -0.316 1.316 23 H -0.289 1.289 24 H -0.238 1.238 25 C 0.141 3.859 26 C -0.107 4.107 27 C 0.116 3.884 28 C -0.030 4.030 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.044 0.956 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.187 0.813 35 H 0.185 0.815 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.038 0.962 43 H 0.021 0.979 44 H 0.245 0.755 45 H 0.027 0.973 46 H 0.025 0.975 47 H 0.092 0.908 48 H 0.059 0.941 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.652 -26.006 -0.291 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.137 4.137 4 C -0.038 4.038 5 N -0.209 5.209 6 C -0.044 4.044 7 C -0.199 4.199 8 C 0.354 3.646 9 O -0.454 6.454 10 N -0.326 5.326 11 C -0.031 4.031 12 C -0.147 4.147 13 C -0.059 4.059 14 C -0.148 4.148 15 C -0.023 4.023 16 N -0.358 5.358 17 C -0.440 4.440 18 H 0.058 0.942 19 C -0.277 4.277 20 N -0.609 5.609 21 Si 0.936 3.064 22 H -0.246 1.246 23 H -0.217 1.217 24 H -0.162 1.162 25 C 0.016 3.984 26 C -0.146 4.146 27 C -0.005 4.005 28 C -0.057 4.057 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.204 0.796 35 H 0.202 0.798 36 H 0.125 0.875 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.120 0.880 41 H 0.107 0.893 42 H 0.056 0.944 43 H 0.038 0.962 44 H 0.054 0.946 45 H 0.044 0.956 46 H 0.044 0.956 47 H 0.111 0.889 48 H 0.077 0.923 49 H 0.107 0.893 50 H 0.113 0.887 51 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 13.775 -24.755 -1.414 28.364 hybrid contribution -2.275 -0.683 2.010 3.112 sum 11.499 -25.437 0.595 27.922 Atomic orbital electron populations 1.21777 0.94186 1.02854 1.01809 1.20563 0.96342 0.89733 1.04833 1.21169 1.00258 0.99341 0.92890 1.23425 0.91469 0.89875 0.98989 1.67829 1.12773 1.09453 1.30886 1.23681 0.94165 1.00193 0.86396 1.20918 1.07559 0.96824 0.94603 1.18299 0.76845 0.82001 0.87455 1.90745 1.49814 1.68977 1.35827 1.48038 1.62535 1.05357 1.16708 1.22673 0.96624 0.96158 0.87670 1.21571 0.97613 0.97308 0.98210 1.20996 0.94974 0.94123 0.95822 1.22698 0.96523 0.93885 1.01685 1.22175 0.85073 0.97705 0.97348 1.44932 1.07187 1.34338 1.49341 1.19989 0.88452 1.08107 1.27465 0.94161 1.27096 1.08843 0.96282 0.95466 1.71051 0.99386 1.50356 1.40136 0.83457 0.71711 0.75264 0.75989 1.24574 1.21670 1.16236 1.21721 0.96774 0.87820 0.92075 1.21660 0.97968 0.98053 0.96908 1.21762 0.97214 0.94310 0.87251 1.21718 0.92239 0.91974 0.99730 0.92441 0.90596 0.93719 0.88290 0.90013 0.79630 0.79832 0.87502 0.87979 0.92630 0.91566 0.88017 0.89302 0.94447 0.96164 0.94619 0.95551 0.95615 0.88919 0.92258 0.89334 0.88675 0.84009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.90 71.98 0.71 -0.65 16 2 C -0.08 -0.67 6.08 29.85 0.18 -0.49 16 3 C -0.13 -1.93 5.15 -19.81 -0.10 -2.04 16 4 C 0.12 1.79 10.85 84.71 0.92 2.71 16 5 N -0.50 -9.83 10.35 -194.75 -2.01 -11.85 16 6 C 0.11 2.16 8.60 85.02 0.73 2.89 16 7 C -0.19 -4.08 5.49 -19.99 -0.11 -4.19 16 8 C 0.56 13.69 7.47 86.78 0.65 14.34 16 9 O -0.57 -17.33 16.18 -3.88 -0.06 -17.39 16 10 N -0.60 -12.44 2.96 -821.71 -2.43 -14.87 16 11 C 0.09 1.75 4.43 86.41 0.38 2.13 16 12 C -0.11 -2.85 4.87 30.42 0.15 -2.71 16 13 C -0.06 -1.58 0.55 -51.84 -0.03 -1.61 16 14 C -0.11 -2.91 4.92 31.56 0.16 -2.76 16 15 C 0.10 3.94 4.20 86.77 0.36 4.31 16 16 N -0.63 -29.77 3.35 -692.32 -2.32 -32.09 16 17 C -0.31 -18.20 10.53 84.03 0.88 -17.32 16 18 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 19 C -0.08 -5.08 5.49 84.86 0.47 -4.62 16 20 N -0.96 -62.98 13.70 21.65 0.30 -62.68 16 21 Si 1.11 53.38 24.56 68.60 1.69 55.07 16 22 H -0.32 -15.86 7.11 99.48 0.71 -15.16 16 23 H -0.29 -13.23 6.92 99.48 0.69 -12.54 16 24 H -0.24 -9.75 5.21 99.48 0.52 -9.23 16 25 C 0.14 5.36 6.16 86.63 0.53 5.89 16 26 C -0.11 -2.33 4.84 30.41 0.15 -2.18 16 27 C 0.12 2.25 6.17 86.41 0.53 2.78 16 28 C -0.03 -0.57 9.41 22.73 0.21 -0.35 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.10 0.49 8.09 -2.38 -0.02 0.47 16 33 H 0.08 0.66 8.09 -2.39 -0.02 0.64 16 34 H 0.19 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.19 2.93 5.37 -2.91 -0.02 2.91 16 36 H 0.11 1.97 3.99 -2.39 -0.01 1.96 16 37 H 0.10 1.59 6.46 -2.39 -0.02 1.58 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 2.09 7.82 -2.39 -0.02 2.07 16 40 H 0.10 2.06 6.17 -2.38 -0.01 2.05 16 41 H 0.09 2.04 7.98 -2.39 -0.02 2.02 16 42 H 0.04 1.53 6.42 -2.39 -0.02 1.52 16 43 H 0.02 0.85 4.32 -2.39 -0.01 0.84 16 44 H 0.24 16.11 8.73 -92.71 -0.81 15.30 16 45 H 0.03 0.99 8.00 -2.38 -0.02 0.97 16 46 H 0.03 1.04 8.03 -2.39 -0.02 1.02 16 47 H 0.09 1.80 8.09 -2.39 -0.02 1.78 16 48 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.09 1.87 6.99 -2.39 -0.02 1.85 16 50 H 0.10 1.47 7.62 -2.39 -0.02 1.45 16 51 H 0.14 2.59 7.98 -2.91 -0.02 2.57 16 Total: -1.00 -77.66 382.40 2.62 -75.04 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.69 Total: 12.62 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: 6.78 Total: -3.85 kcal Atomic # 7 Polarization: -115.02 SS G_CDS: -6.47 Total: -121.49 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.06 Total: -17.39 kcal Atomic # 14 Polarization: 53.38 SS G_CDS: 1.69 Total: 55.07 kcal Total: -77.66 2.62 -75.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035205021.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.376 kcal (2) G-P(sol) polarization free energy of solvation -77.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds