Wall clock time and date at job start Wed Apr 1 2020 02:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47582 * 2 1 4 4 C 1.50705 * 109.46875 * 120.00432 * 2 1 3 5 5 C 1.38350 * 119.45926 * 274.99247 * 4 2 1 6 6 C 1.38348 * 119.30434 * 180.02562 * 5 4 2 7 7 C 1.40028 * 118.29026 * 0.02562 * 6 5 4 8 8 C 1.47839 * 120.56099 * 180.02562 * 7 6 5 9 9 O 1.21549 * 120.00188 * 137.91188 * 8 7 6 10 10 N 1.34783 * 119.99716 * 317.91417 * 8 7 6 11 11 C 1.46890 * 120.45832 * 174.11917 * 10 8 7 12 12 C 1.53359 * 108.74038 * 124.38372 * 11 10 8 13 13 C 1.52558 * 109.12623 * 52.26111 * 12 11 10 14 14 C 1.52966 * 114.06223 * 75.54053 * 13 12 11 15 15 N 1.47168 * 87.85118 * 139.44424 * 14 13 12 16 16 C 1.36932 * 136.00107 * 153.34002 * 15 14 13 17 17 H 1.08001 * 120.00124 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00141 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99804 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00291 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46833 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46753 * 120.00075 * 20 18 16 23 23 H 1.48500 * 109.47246 * 240.00282 * 20 18 16 24 24 C 1.47167 * 87.99558 * 333.33597 * 15 14 13 25 25 C 1.52553 * 113.43109 * 302.67092 * 13 12 11 26 26 C 1.46881 * 120.46561 * 354.14095 * 10 8 7 27 27 C 1.39519 * 118.87834 * 0.27249 * 7 6 5 28 28 N 1.31690 * 120.56666 * 359.45440 * 27 7 6 29 29 H 1.09000 * 109.46557 * 299.99685 * 1 2 3 30 30 H 1.08998 * 109.47190 * 59.99876 * 1 2 3 31 31 H 1.09006 * 109.47100 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46812 * 239.99827 * 2 1 3 33 33 H 1.08997 * 109.47650 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47061 * 300.00434 * 3 2 1 35 35 H 1.09001 * 109.46738 * 59.99773 * 3 2 1 36 36 H 1.08007 * 120.34644 * 359.97438 * 5 4 2 37 37 H 1.08006 * 120.85842 * 179.97438 * 6 5 4 38 38 H 1.09002 * 109.59693 * 4.60946 * 11 10 8 39 39 H 1.08999 * 109.59182 * 244.15766 * 11 10 8 40 40 H 1.08996 * 109.53273 * 292.36867 * 12 11 10 41 41 H 1.09002 * 109.58681 * 172.18304 * 12 11 10 42 42 H 1.08989 * 113.48977 * 24.69648 * 14 13 12 43 43 H 1.09000 * 113.49004 * 254.18480 * 14 13 12 44 44 H 0.97003 * 119.99728 * 179.97438 * 19 18 16 45 45 H 1.09008 * 113.48675 * 141.42115 * 24 15 14 46 46 H 1.09000 * 113.48772 * 271.91632 * 24 15 14 47 47 H 1.08997 * 109.53066 * 177.21592 * 25 13 12 48 48 H 1.09001 * 109.52767 * 297.42020 * 25 13 12 49 49 H 1.09004 * 109.59108 * 355.38628 * 26 10 8 50 50 H 1.08997 * 109.59226 * 115.82264 * 26 10 8 51 51 H 1.08005 * 119.71453 * 179.72642 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.1603 -0.0096 2.4164 6 6 2.6222 -0.6649 3.5438 7 6 2.9446 -2.0233 3.4365 8 6 3.4421 -2.7728 4.6098 9 8 3.0376 -3.8980 4.8284 10 7 4.3441 -2.2083 5.4370 11 6 4.7488 -2.8896 6.6738 12 6 6.2745 -3.0443 6.6745 13 6 6.9150 -1.6847 6.4125 14 6 6.8845 -0.7389 7.6143 15 7 8.2537 -0.3327 7.2591 16 6 9.0266 0.7840 7.4340 17 1 8.6252 1.6430 7.9513 18 6 10.3259 0.8122 6.9465 19 7 10.8153 -0.2347 6.3165 20 14 11.3800 2.3360 7.1844 21 1 10.6023 3.3661 7.9189 22 1 12.5927 1.9819 7.9651 23 1 11.7832 2.8710 5.8591 24 6 8.4279 -1.6534 6.6336 25 6 6.4629 -1.0432 5.1043 26 6 4.9357 -0.9031 5.1147 27 6 2.7934 -2.6563 2.2024 28 7 2.3447 -1.9903 1.1587 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1301 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 1.9030 1.0385 2.4612 37 1 2.7321 -0.1420 4.4825 38 1 4.2817 -3.8734 6.7189 39 1 4.4412 -2.2967 7.5352 40 1 6.5703 -3.7432 5.8922 41 1 6.6032 -3.4211 7.6431 42 1 6.8191 -1.2552 8.5719 43 1 6.1541 0.0643 7.5167 44 1 11.7232 -0.2148 5.9755 45 1 9.0019 -1.6231 5.7074 46 1 8.7819 -2.4182 7.3249 47 1 6.9184 -0.0580 5.0050 48 1 6.7654 -1.6717 4.2667 49 1 4.5918 -0.5785 4.1326 50 1 4.6408 -0.1722 5.8675 51 1 3.0423 -3.7026 2.1033 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035720652.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:50 Heat of formation + Delta-G solvation = 55.360713 kcal Electronic energy + Delta-G solvation = -30425.537684 eV Core-core repulsion = 26519.547577 eV Total energy + Delta-G solvation = -3905.990108 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.13296 -39.98480 -38.71053 -35.89086 -35.85980 -33.25044 -32.41643 -31.24548 -30.54646 -30.18029 -27.56423 -27.03940 -25.31696 -24.78713 -23.99320 -23.41494 -23.01360 -21.57071 -20.81065 -19.93477 -18.11599 -17.12331 -16.82784 -16.70313 -16.44089 -15.96793 -15.10123 -14.98764 -14.89177 -14.69489 -14.60385 -14.22195 -14.03289 -13.81037 -13.73174 -13.41106 -13.18837 -13.09756 -12.79829 -12.66161 -12.41943 -12.26026 -12.17020 -11.71264 -11.59504 -11.53433 -11.30363 -11.11767 -11.08841 -10.91400 -10.86590 -10.51042 -10.31332 -10.22035 -9.90473 -9.75773 -9.63994 -9.57079 -9.25112 -9.20036 -8.83476 -8.48322 -6.89513 -5.79518 -3.11663 0.52515 0.96098 2.61269 2.94432 3.35660 3.40939 3.43691 3.52356 3.83811 4.29990 4.35561 4.42625 4.55037 4.70154 4.73102 4.81633 4.86150 4.95241 5.00674 5.10340 5.21234 5.25866 5.29742 5.36879 5.39662 5.43787 5.45554 5.51296 5.57584 5.58098 5.61808 5.72455 5.78310 5.80198 5.83033 5.87105 5.95543 5.96284 6.11763 6.24083 6.31966 6.32757 6.46473 6.55310 6.59053 6.76833 6.79243 7.20025 7.32788 7.36168 7.54500 7.68002 7.95181 8.06758 9.01153 9.67850 10.62671 11.37866 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012441 B = 0.002761 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.115552 B =10140.219928 C =11784.813878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 C -0.149 4.149 4 C 0.153 3.847 5 C -0.176 4.176 6 C -0.041 4.041 7 C -0.182 4.182 8 C 0.564 3.436 9 O -0.540 6.540 10 N -0.597 5.597 11 C 0.115 3.885 12 C -0.114 4.114 13 C -0.115 4.115 14 C 0.127 3.873 15 N -0.608 5.608 16 C -0.216 4.216 17 H 0.080 0.920 18 C -0.008 4.008 19 N -0.919 5.919 20 Si 0.910 3.090 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.167 3.833 25 C -0.094 4.094 26 C 0.100 3.900 27 C 0.156 3.844 28 N -0.485 5.485 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.031 0.969 43 H 0.036 0.964 44 H 0.253 0.747 45 H 0.070 0.930 46 H 0.024 0.976 47 H 0.089 0.911 48 H 0.061 0.939 49 H 0.084 0.916 50 H 0.073 0.927 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.903 0.099 -9.503 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.207 4.207 4 C 0.015 3.985 5 C -0.196 4.196 6 C -0.067 4.067 7 C -0.187 4.187 8 C 0.351 3.649 9 O -0.418 6.418 10 N -0.329 5.329 11 C -0.007 4.007 12 C -0.153 4.153 13 C -0.117 4.117 14 C 0.001 3.999 15 N -0.334 5.334 16 C -0.344 4.344 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.566 5.566 20 Si 0.741 3.259 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.217 1.217 24 C 0.041 3.959 25 C -0.132 4.132 26 C -0.022 4.022 27 C -0.002 4.002 28 N -0.193 5.193 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.042 0.958 47 H 0.108 0.892 48 H 0.079 0.921 49 H 0.102 0.898 50 H 0.091 0.909 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -19.886 -0.697 -10.176 22.350 hybrid contribution 1.020 1.214 1.221 2.001 sum -18.866 0.517 -8.955 20.890 Atomic orbital electron populations 1.21805 0.93415 1.02434 1.02239 1.20112 0.96303 0.95564 0.94908 1.21946 1.01685 0.94589 1.02475 1.21455 0.92435 0.89840 0.94753 1.21946 1.02614 1.01965 0.93063 1.21861 0.92823 0.92579 0.99403 1.20949 1.06014 0.95332 0.96440 1.18109 0.79168 0.85563 0.82051 1.90771 1.59071 1.18295 1.73710 1.48033 1.40977 1.21262 1.22590 1.21676 0.95846 0.98260 0.84869 1.21732 0.93549 0.97673 1.02329 1.22077 0.99765 0.94039 0.95783 1.22396 0.88980 0.94288 0.94226 1.45603 1.10462 1.11747 1.65570 1.18953 0.93581 0.90439 1.31383 0.90222 1.24784 0.96964 0.97737 1.00993 1.69841 1.15851 1.28641 1.42247 0.86076 0.80463 0.82029 0.77372 1.20484 1.21773 1.21700 1.22035 0.89602 0.86750 0.97538 1.21413 0.92612 1.02607 0.96546 1.22161 0.95074 0.83779 1.01219 1.22861 0.91150 0.99815 0.86350 1.67577 1.11819 1.08535 1.31392 0.92424 0.91718 0.92229 0.88994 0.92053 0.91669 0.92006 0.83952 0.83890 0.89245 0.91245 0.91709 0.90626 0.95185 0.94620 0.93721 0.91196 0.95838 0.89234 0.92056 0.89806 0.90913 0.81882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.18 37.16 0.34 -0.57 16 2 C -0.05 -0.37 3.23 -91.77 -0.30 -0.67 16 3 C -0.15 -0.89 8.61 37.15 0.32 -0.57 16 4 C 0.15 1.52 5.79 -82.51 -0.48 1.04 16 5 C -0.18 -1.56 9.16 -39.50 -0.36 -1.92 16 6 C -0.04 -0.40 7.52 -38.87 -0.29 -0.69 16 7 C -0.18 -2.21 5.07 -104.82 -0.53 -2.74 16 8 C 0.56 7.94 7.31 -12.33 -0.09 7.85 16 9 O -0.54 -9.16 16.37 5.32 0.09 -9.07 16 10 N -0.60 -7.90 2.94 -173.74 -0.51 -8.41 16 11 C 0.12 1.52 6.35 -3.64 -0.02 1.49 16 12 C -0.11 -1.66 5.30 -26.77 -0.14 -1.80 16 13 C -0.12 -1.99 0.84 -155.02 -0.13 -2.12 16 14 C 0.13 2.45 7.63 -8.20 -0.06 2.38 16 15 N -0.61 -14.97 3.55 -184.66 -0.66 -15.62 16 16 C -0.22 -5.89 10.74 -15.06 -0.16 -6.05 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -26.86 11.51 55.49 0.64 -26.22 16 20 Si 0.91 21.75 29.55 -169.99 -5.02 16.72 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 C 0.17 3.77 6.54 -8.22 -0.05 3.72 16 25 C -0.09 -1.49 5.27 -26.78 -0.14 -1.63 16 26 C 0.10 1.25 4.95 -3.65 -0.02 1.23 16 27 C 0.16 1.91 10.84 -17.14 -0.19 1.72 16 28 N -0.49 -5.79 10.25 -9.14 -0.09 -5.88 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 35 H 0.06 0.32 6.48 -51.93 -0.34 -0.02 16 36 H 0.14 0.91 6.29 -52.48 -0.33 0.58 16 37 H 0.14 1.19 6.84 -52.48 -0.36 0.83 16 38 H 0.09 1.21 6.97 -51.93 -0.36 0.85 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 42 H 0.03 0.57 8.06 -51.94 -0.42 0.15 16 43 H 0.04 0.65 7.53 -51.93 -0.39 0.25 16 44 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.07 1.78 7.11 -51.92 -0.37 1.41 16 46 H 0.02 0.56 8.09 -51.93 -0.42 0.13 16 47 H 0.09 1.64 7.95 -51.93 -0.41 1.23 16 48 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.08 0.94 4.70 -51.93 -0.24 0.70 16 50 H 0.07 0.85 7.60 -51.93 -0.39 0.46 16 51 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 LS Contribution 398.53 15.07 6.01 6.01 Total: -1.00 -32.42 398.53 -10.19 -42.60 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.23 Total: -0.48 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -2.40 Total: 0.36 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.62 Total: -56.14 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.42 -10.19 -42.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035720652.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.963 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds