Wall clock time and date at job start Wed Apr 1 2020 02:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47434 * 2 1 4 4 C 1.50701 * 109.47115 * 120.00257 * 2 1 3 5 5 C 1.38352 * 119.45678 * 275.00185 * 4 2 1 6 6 C 1.38358 * 119.30459 * 180.02562 * 5 4 2 7 7 C 1.40029 * 118.28516 * 359.97438 * 6 5 4 8 8 C 1.47836 * 120.55793 * 180.02562 * 7 6 5 9 9 O 1.21553 * 120.00309 * 326.93634 * 8 7 6 10 10 N 1.34779 * 119.99891 * 146.93967 * 8 7 6 11 11 C 1.46531 * 120.97862 * 354.70543 * 10 8 7 12 12 C 1.51789 * 110.13282 * 233.78456 * 11 10 8 13 13 C 1.49516 * 115.06677 * 318.37899 * 12 11 10 14 14 H 1.09002 * 105.18916 * 156.93598 * 13 12 11 15 15 C 1.52640 * 117.06855 * 40.17982 * 13 12 11 16 16 H 1.09000 * 112.16295 * 83.01097 * 15 13 12 17 17 C 1.56107 * 101.81501 * 203.13399 * 15 13 12 18 18 C 1.55099 * 101.08655 * 37.63242 * 17 15 13 19 19 N 1.46256 * 114.17068 * 272.11089 * 13 12 11 20 20 C 1.36943 * 125.95987 * 315.60455 * 19 13 12 21 21 H 1.08000 * 119.99829 * 351.03968 * 20 19 13 22 22 C 1.38809 * 119.99811 * 171.05117 * 20 19 13 23 23 N 1.31623 * 119.99970 * 326.49846 * 22 20 19 24 24 Si 1.86795 * 120.00113 * 146.50458 * 22 20 19 25 25 H 1.48500 * 109.47371 * 179.97438 * 24 22 20 26 26 H 1.48500 * 109.47346 * 59.99466 * 24 22 20 27 27 H 1.48499 * 109.47143 * 299.99426 * 24 22 20 28 28 C 1.46167 * 120.96215 * 175.03271 * 10 8 7 29 29 C 1.39523 * 118.88275 * 0.27587 * 7 6 5 30 30 N 1.31696 * 120.56369 * 359.40822 * 29 7 6 31 31 H 1.08998 * 109.47293 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46852 * 299.99799 * 1 2 3 33 33 H 1.09005 * 109.46696 * 59.99598 * 1 2 3 34 34 H 1.09001 * 109.46852 * 240.00201 * 2 1 3 35 35 H 1.08994 * 109.47549 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.46999 * 300.00450 * 3 2 1 37 37 H 1.09003 * 109.46837 * 59.99477 * 3 2 1 38 38 H 1.08005 * 120.35118 * 0.02562 * 5 4 2 39 39 H 1.07992 * 120.85940 * 179.97438 * 6 5 4 40 40 H 1.09000 * 109.35981 * 113.57704 * 11 10 8 41 41 H 1.09006 * 109.35934 * 353.98058 * 11 10 8 42 42 H 1.09000 * 108.36217 * 196.92873 * 12 11 10 43 43 H 1.09002 * 108.36082 * 79.82783 * 12 11 10 44 44 H 1.09000 * 111.10371 * 279.67585 * 17 15 13 45 45 H 1.09000 * 111.09946 * 155.58778 * 17 15 13 46 46 H 1.08993 * 110.35109 * 204.07675 * 18 17 15 47 47 H 1.08994 * 110.44167 * 81.84208 * 18 17 15 48 48 H 0.97002 * 119.99511 * 357.98337 * 23 22 20 49 49 H 1.08999 * 109.51669 * 0.99397 * 28 10 8 50 50 H 1.09002 * 109.03922 * 241.09091 * 28 10 8 51 51 H 1.07999 * 119.71768 * 179.72237 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.1601 -0.0095 2.4163 6 6 2.6221 -0.6647 3.5439 7 6 2.9437 -2.0234 3.4368 8 6 3.4412 -2.7728 4.6101 9 8 4.1251 -2.2122 5.4440 10 7 3.1364 -4.0776 4.7550 11 6 2.2210 -4.7460 3.8263 12 6 1.0997 -5.4223 4.5940 13 6 1.5228 -6.1293 5.8416 14 1 0.6259 -6.1808 6.4589 15 6 2.5753 -5.4414 6.7069 16 1 2.1383 -4.6956 7.3710 17 6 3.1815 -6.6469 7.4920 18 6 3.1769 -7.7472 6.3989 19 7 1.9341 -7.5173 5.6332 20 6 1.2841 -8.4410 4.8588 21 1 0.3094 -8.2148 4.4523 22 6 1.8779 -9.6679 4.5966 23 7 3.1857 -9.7535 4.4748 24 14 0.8211 -11.1976 4.4163 25 1 1.6899 -12.3699 4.1406 26 1 -0.1307 -11.0120 3.2917 27 1 0.0638 -11.4269 5.6730 28 6 3.7041 -4.8656 5.8474 29 6 2.7917 -2.6566 2.2029 30 7 2.3422 -1.9908 1.1594 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6767 1.9563 0.8900 38 1 1.9020 1.0383 2.4615 39 1 2.7319 -0.1419 4.4825 40 1 2.7695 -5.4940 3.2538 41 1 1.7980 -4.0094 3.1430 42 1 0.6201 -6.1459 3.9349 43 1 0.3617 -4.6659 4.8613 44 1 2.5468 -6.9266 8.3329 45 1 4.1962 -6.4283 7.8244 46 1 3.1626 -8.7362 6.8566 47 1 4.0465 -7.6430 5.7502 48 1 3.7321 -8.9546 4.5392 49 1 4.3418 -4.2301 6.4617 50 1 4.2949 -5.6803 5.4285 51 1 3.0400 -3.7030 2.1040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036735467.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:05 Heat of formation + Delta-G solvation = 33.017677 kcal Electronic energy + Delta-G solvation = -30928.696517 eV Core-core repulsion = 27021.737543 eV Total energy + Delta-G solvation = -3906.958975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.14265 -39.87025 -38.34131 -35.95219 -35.41029 -33.09831 -32.74466 -31.94695 -30.88420 -29.20867 -27.91183 -27.55162 -25.90398 -24.46732 -24.05311 -23.58710 -22.65111 -21.06214 -20.25761 -20.07811 -18.64760 -17.68464 -17.20288 -16.59311 -16.49961 -15.93994 -15.28680 -15.06438 -14.97244 -14.55252 -14.31404 -14.16535 -14.10456 -13.74760 -13.36280 -13.24012 -13.21180 -13.13740 -12.95490 -12.69348 -12.50792 -12.42058 -11.94235 -11.62571 -11.58201 -11.42282 -11.28214 -11.22641 -11.03456 -10.63884 -10.40784 -10.32052 -10.27161 -10.10082 -10.05813 -10.03489 -9.98159 -9.57374 -9.52471 -9.10677 -8.42830 -8.31054 -6.96275 -6.20228 -3.09373 0.51479 1.00079 2.71021 3.03240 3.47922 3.53622 3.56877 3.70490 3.84396 4.32839 4.43317 4.54728 4.58994 4.71344 4.73924 4.84103 4.87814 4.98750 5.07415 5.17588 5.21519 5.25542 5.29066 5.31454 5.35561 5.39637 5.43784 5.52256 5.57362 5.60264 5.70694 5.74658 5.77253 5.84425 5.89449 5.90266 5.97192 6.04253 6.11069 6.14538 6.29590 6.34095 6.40013 6.47656 6.58823 6.80193 6.84162 6.98383 7.00400 7.49346 7.67972 7.75753 8.14545 8.45311 8.97953 9.79808 10.37239 11.17558 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014569 B = 0.002922 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.411041 B = 9579.374879 C =10918.876486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 C -0.148 4.148 4 C 0.152 3.848 5 C -0.179 4.179 6 C -0.019 4.019 7 C -0.185 4.185 8 C 0.563 3.437 9 O -0.544 6.544 10 N -0.593 5.593 11 C 0.100 3.900 12 C -0.134 4.134 13 C 0.172 3.828 14 H 0.010 0.990 15 C -0.106 4.106 16 H 0.080 0.920 17 C -0.132 4.132 18 C 0.141 3.859 19 N -0.591 5.591 20 C -0.341 4.341 21 H 0.068 0.932 22 C -0.022 4.022 23 N -0.910 5.910 24 Si 1.060 2.940 25 H -0.286 1.286 26 H -0.294 1.294 27 H -0.295 1.295 28 C 0.120 3.880 29 C 0.134 3.866 30 N -0.484 5.484 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.066 0.934 46 H 0.052 0.948 47 H 0.025 0.975 48 H 0.269 0.731 49 H 0.087 0.913 50 H 0.077 0.923 51 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 20.397 -4.802 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.069 4.069 3 C -0.206 4.206 4 C 0.015 3.985 5 C -0.199 4.199 6 C -0.046 4.046 7 C -0.190 4.190 8 C 0.351 3.649 9 O -0.423 6.423 10 N -0.323 5.323 11 C -0.022 4.022 12 C -0.174 4.174 13 C 0.065 3.935 14 H 0.028 0.972 15 C -0.125 4.125 16 H 0.099 0.901 17 C -0.171 4.171 18 C 0.016 3.984 19 N -0.317 5.317 20 C -0.468 4.468 21 H 0.086 0.914 22 C -0.224 4.224 23 N -0.551 5.551 24 Si 0.890 3.110 25 H -0.212 1.212 26 H -0.221 1.221 27 H -0.222 1.222 28 C -0.002 4.002 29 C -0.024 4.024 30 N -0.193 5.193 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.070 0.930 47 H 0.042 0.958 48 H 0.080 0.920 49 H 0.106 0.894 50 H 0.095 0.905 51 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -2.449 18.495 -5.490 19.448 hybrid contribution -0.088 1.934 1.039 2.197 sum -2.538 20.429 -4.451 21.062 Atomic orbital electron populations 1.21809 0.93307 1.02636 1.02196 1.20113 0.96415 0.95422 0.94937 1.21936 1.01459 0.94749 1.02427 1.21470 0.92425 0.89862 0.94746 1.21941 1.03045 1.01855 0.93019 1.21646 0.91440 0.92274 0.99214 1.20965 1.06157 0.95851 0.96000 1.18048 0.80402 0.81406 0.85068 1.90751 1.39808 1.68198 1.43517 1.47734 1.45715 1.08925 1.29943 1.21878 0.91683 0.96617 0.92022 1.21241 0.97008 0.99432 0.99760 1.19453 0.95214 0.85858 0.93008 0.97201 1.22323 0.96246 0.97046 0.96927 0.90136 1.23081 0.99929 0.95699 0.98395 1.21647 0.89499 0.96307 0.90974 1.44706 1.27624 1.04914 1.54447 1.19592 1.00201 0.95684 1.31367 0.91381 1.25620 0.97730 1.00128 0.98932 1.70840 1.05476 1.33587 1.45195 0.83571 0.74904 0.76473 0.76040 1.21215 1.22079 1.22232 1.21620 0.95651 0.94752 0.88171 1.23395 0.91856 1.00052 0.87068 1.67588 1.11943 1.08465 1.31273 0.92045 0.92443 0.91716 0.88940 0.92262 0.91661 0.92071 0.84046 0.83901 0.90548 0.89699 0.89513 0.93256 0.91390 0.91497 0.92969 0.95782 0.91975 0.89418 0.90460 0.81221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.18 37.16 0.34 -0.67 16 2 C -0.05 -0.40 3.23 -91.77 -0.30 -0.69 16 3 C -0.15 -0.88 8.61 37.16 0.32 -0.56 16 4 C 0.15 1.62 5.79 -82.51 -0.48 1.15 16 5 C -0.18 -1.73 9.16 -39.50 -0.36 -2.10 16 6 C -0.02 -0.22 9.75 -38.87 -0.38 -0.60 16 7 C -0.18 -2.51 5.38 -104.82 -0.56 -3.07 16 8 C 0.56 8.99 7.44 -12.33 -0.09 8.89 16 9 O -0.54 -10.01 16.27 5.32 0.09 -9.93 16 10 N -0.59 -9.46 2.94 -175.70 -0.52 -9.98 16 11 C 0.10 1.57 4.85 -4.64 -0.02 1.55 16 12 C -0.13 -2.37 5.60 -29.07 -0.16 -2.53 16 13 C 0.17 3.40 2.63 -69.97 -0.18 3.22 16 14 H 0.01 0.22 8.06 -51.93 -0.42 -0.20 16 15 C -0.11 -1.80 3.71 -89.08 -0.33 -2.13 16 16 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 17 C -0.13 -2.30 6.47 -23.96 -0.15 -2.45 16 18 C 0.14 3.12 4.83 -2.24 -0.01 3.11 16 19 N -0.59 -13.99 3.27 -165.72 -0.54 -14.53 16 20 C -0.34 -9.08 9.17 -15.06 -0.14 -9.22 16 21 H 0.07 1.81 7.49 -52.49 -0.39 1.42 16 22 C -0.02 -0.60 5.02 -17.43 -0.09 -0.68 16 23 N -0.91 -26.52 12.94 55.49 0.72 -25.80 16 24 Si 1.06 24.81 30.03 -169.99 -5.10 19.71 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.12 2.00 5.49 -4.16 -0.02 1.97 16 29 C 0.13 1.76 8.57 -17.13 -0.15 1.61 16 30 N -0.48 -6.21 10.25 -9.14 -0.09 -6.31 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.31 6.48 -51.93 -0.34 -0.02 16 38 H 0.14 0.97 6.29 -52.48 -0.33 0.64 16 39 H 0.14 1.51 8.03 -52.49 -0.42 1.09 16 40 H 0.08 1.29 8.06 -51.93 -0.42 0.87 16 41 H 0.09 1.17 4.26 -51.93 -0.22 0.95 16 42 H 0.09 1.69 6.79 -51.93 -0.35 1.34 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.07 1.01 7.98 -51.93 -0.41 0.60 16 46 H 0.05 1.28 7.80 -51.93 -0.41 0.88 16 47 H 0.02 0.57 5.84 -51.93 -0.30 0.26 16 48 H 0.27 7.78 6.01 -40.82 -0.25 7.54 16 49 H 0.09 1.43 6.99 -51.93 -0.36 1.07 16 50 H 0.08 1.38 6.49 -51.93 -0.34 1.04 16 51 H 0.17 2.16 5.82 -52.49 -0.31 1.85 16 LS Contribution 387.58 15.07 5.84 5.84 Total: -1.00 -31.46 387.58 -10.25 -41.71 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -7.87 Total: 2.51 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.77 Total: -3.22 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.43 Total: -56.62 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.10 Total: 19.71 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.46 -10.25 -41.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036735467.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.728 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds