Wall clock time and date at job start Wed Apr 1 2020 02:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46809 * 2 1 4 4 C 1.50696 * 109.47279 * 119.99857 * 2 1 3 5 5 C 1.38359 * 119.45969 * 275.00235 * 4 2 1 6 6 C 1.38352 * 119.30100 * 179.97438 * 5 4 2 7 7 C 1.40027 * 118.29324 * 0.02562 * 6 5 4 8 8 C 1.47835 * 120.56380 * 179.97438 * 7 6 5 9 9 O 1.21555 * 119.99832 * 4.91251 * 8 7 6 10 10 N 1.34771 * 120.00039 * 184.91646 * 8 7 6 11 11 C 1.44338 * 116.40353 * 174.32705 * 10 8 7 12 12 C 1.51580 * 113.05203 * 187.64076 * 11 10 8 13 13 C 1.52983 * 111.58034 * 320.44159 * 12 11 10 14 14 H 1.08995 * 112.10696 * 295.25298 * 13 12 11 15 15 C 1.54011 * 109.50364 * 61.13583 * 13 12 11 16 16 H 1.08998 * 109.50609 * 186.24813 * 15 13 12 17 17 C 1.54782 * 101.74180 * 71.47529 * 15 13 12 18 18 C 1.54803 * 101.70788 * 38.75117 * 17 15 13 19 19 N 1.47402 * 107.23829 * 337.50648 * 18 17 15 20 20 C 1.36940 * 125.98005 * 176.61702 * 19 18 17 21 21 H 1.08011 * 119.99782 * 179.97438 * 20 19 18 22 22 C 1.38809 * 120.00399 * 359.96888 * 20 19 18 23 23 N 1.31618 * 119.99550 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00170 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47196 * 60.00331 * 24 22 20 26 26 H 1.48505 * 109.47110 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47188 * 299.99964 * 24 22 20 28 28 C 1.43991 * 116.40430 * 354.34841 * 10 8 7 29 29 C 1.39532 * 118.87650 * 0.24865 * 7 6 5 30 30 N 1.31694 * 120.56304 * 359.45783 * 29 7 6 31 31 H 1.08996 * 109.47154 * 299.99871 * 1 2 3 32 32 H 1.08998 * 109.47138 * 59.99853 * 1 2 3 33 33 H 1.09000 * 109.46817 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.47154 * 240.00129 * 2 1 3 35 35 H 1.08995 * 109.46711 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47140 * 300.00363 * 3 2 1 37 37 H 1.08996 * 109.47157 * 60.00131 * 3 2 1 38 38 H 1.08002 * 120.34919 * 359.97438 * 5 4 2 39 39 H 1.08002 * 120.85667 * 179.97438 * 6 5 4 40 40 H 1.09001 * 108.76755 * 66.71602 * 11 10 8 41 41 H 1.09005 * 108.67591 * 308.49726 * 11 10 8 42 42 H 1.09003 * 109.06515 * 199.89919 * 12 11 10 43 43 H 1.08999 * 109.00617 * 80.94261 * 12 11 10 44 44 H 1.09001 * 110.92247 * 280.70951 * 17 15 13 45 45 H 1.09002 * 111.11927 * 156.88661 * 17 15 13 46 46 H 1.08995 * 109.91535 * 218.04621 * 18 17 15 47 47 H 1.09005 * 109.91360 * 96.95577 * 18 17 15 48 48 H 0.97004 * 119.99775 * 180.02562 * 23 22 20 49 49 H 1.09003 * 108.12949 * 304.50964 * 28 10 8 50 50 H 1.08988 * 108.13921 * 61.01357 * 28 10 8 51 51 H 1.07994 * 119.71315 * 179.74747 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 6 2.1603 -0.0093 2.4164 6 6 2.6213 -0.6648 3.5441 7 6 2.9429 -2.0234 3.4372 8 6 3.4405 -2.7728 4.6104 9 8 3.4890 -2.2348 5.6993 10 7 3.8403 -4.0525 4.4726 11 6 4.4291 -4.6698 5.6368 12 6 5.0168 -6.0374 5.3502 13 6 4.1334 -6.8401 4.3933 14 1 3.1618 -7.0722 4.8291 15 6 4.0203 -6.0946 3.0504 16 1 3.3043 -6.6078 2.4084 17 6 5.4385 -6.2890 2.4617 18 6 5.7557 -7.7451 2.8807 19 7 4.8988 -8.0634 4.0370 20 6 4.8214 -9.2743 4.6719 21 1 4.1575 -9.4008 5.5145 22 6 5.5960 -10.3391 4.2327 23 7 6.4052 -10.1848 3.2062 24 14 5.4898 -11.9910 5.0983 25 1 4.0981 -12.5030 5.0188 26 1 6.4103 -12.9539 4.4419 27 1 5.8772 -11.8292 6.5227 28 6 3.6332 -4.6524 3.1800 29 6 2.7914 -2.6566 2.2030 30 7 2.3432 -1.9904 1.1592 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6767 1.9564 0.8900 38 1 1.9028 1.0387 2.4613 39 1 2.7311 -0.1419 4.4828 40 1 3.6628 -4.7714 6.4053 41 1 5.2193 -4.0207 6.0141 42 1 5.1164 -6.5856 6.2871 43 1 6.0036 -5.9133 4.9041 44 1 6.1454 -5.5915 2.9110 45 1 5.4304 -6.1887 1.3763 46 1 6.8053 -7.8303 3.1618 47 1 5.5356 -8.4247 2.0573 48 1 6.9462 -10.9290 2.8990 49 1 2.5765 -4.5607 2.9289 50 1 4.2013 -4.0813 2.4460 51 1 3.0394 -3.7030 2.1043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036735470.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:27 Heat of formation + Delta-G solvation = 81.672350 kcal Electronic energy + Delta-G solvation = -30670.996023 eV Core-core repulsion = 26766.146873 eV Total energy + Delta-G solvation = -3904.849150 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.52056 -39.90677 -38.39048 -36.10073 -35.51380 -32.79861 -32.68664 -32.63432 -30.23576 -29.59114 -28.45145 -27.56492 -25.82825 -24.61179 -24.47644 -23.11435 -22.51910 -20.99801 -20.51540 -20.09443 -18.25538 -17.86426 -17.15115 -16.58749 -16.30714 -16.05071 -15.70860 -14.89638 -14.81936 -14.53239 -14.48095 -14.23373 -14.11876 -13.79884 -13.65690 -13.29483 -13.27498 -13.06738 -12.84026 -12.42658 -12.37230 -11.94451 -11.84792 -11.56111 -11.52561 -11.51089 -11.30901 -11.05204 -11.01574 -10.78406 -10.72384 -10.24426 -10.17057 -10.12630 -10.06715 -9.85808 -9.66601 -9.53600 -9.47559 -9.17289 -8.65322 -8.52410 -6.91069 -5.75065 -3.08892 0.48531 1.03972 2.75087 2.97089 3.38335 3.43040 3.43898 3.63337 3.90129 4.31669 4.36538 4.44206 4.64852 4.70588 4.73885 4.76751 4.81318 4.86391 4.90632 5.13260 5.21261 5.26389 5.28710 5.33609 5.37567 5.42724 5.45261 5.52951 5.56690 5.61417 5.69391 5.76101 5.80399 5.83803 5.87757 5.89757 5.91060 5.97722 6.18515 6.24376 6.32443 6.37811 6.43811 6.49705 6.69502 6.83491 6.95888 7.30527 7.49970 7.55679 7.73520 7.77931 8.10196 8.19047 9.16374 9.76052 10.42963 11.36400 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020934 B = 0.002471 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.247063 B =11326.515047 C =12151.653539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 C -0.148 4.148 4 C 0.152 3.848 5 C -0.184 4.184 6 C -0.016 4.016 7 C -0.193 4.193 8 C 0.551 3.449 9 O -0.539 6.539 10 N -0.579 5.579 11 C 0.125 3.875 12 C -0.141 4.141 13 C 0.169 3.831 14 H 0.066 0.934 15 C -0.117 4.117 16 H 0.090 0.910 17 C -0.141 4.141 18 C 0.177 3.823 19 N -0.600 5.600 20 C -0.228 4.228 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.911 3.089 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.103 3.897 29 C 0.064 3.936 30 N -0.484 5.484 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.092 0.908 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.038 0.962 47 H 0.052 0.948 48 H 0.253 0.747 49 H 0.082 0.918 50 H 0.084 0.916 51 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.749 21.428 -5.822 23.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 C -0.206 4.206 4 C 0.014 3.986 5 C -0.203 4.203 6 C -0.042 4.042 7 C -0.198 4.198 8 C 0.339 3.661 9 O -0.418 6.418 10 N -0.310 5.310 11 C 0.003 3.997 12 C -0.181 4.181 13 C 0.061 3.939 14 H 0.084 0.916 15 C -0.137 4.137 16 H 0.108 0.892 17 C -0.180 4.180 18 C 0.053 3.947 19 N -0.324 5.324 20 C -0.356 4.356 21 H 0.095 0.905 22 C -0.203 4.203 23 N -0.569 5.569 24 Si 0.742 3.258 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C -0.019 4.019 29 C -0.092 4.092 30 N -0.193 5.193 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.158 0.842 39 H 0.162 0.838 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.063 0.937 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -8.658 20.910 -6.067 23.431 hybrid contribution 0.207 -0.430 1.288 1.373 sum -8.451 20.480 -4.779 22.665 Atomic orbital electron populations 1.21800 0.93395 1.02544 1.02153 1.20119 0.96351 0.95444 0.95064 1.21936 1.01465 0.94802 1.02380 1.21574 0.92092 0.90328 0.94593 1.21943 1.03420 1.01807 0.93160 1.21693 0.90852 0.92687 0.98992 1.20973 1.06954 0.96018 0.95902 1.18196 0.78266 0.81700 0.87952 1.90749 1.55242 1.68807 1.27021 1.46609 1.59886 1.11986 1.12502 1.20761 0.97663 0.95413 0.85888 1.22175 1.00928 0.92741 1.02275 1.21034 0.94474 0.87060 0.91373 0.91638 1.21792 0.99406 0.92163 1.00296 0.89211 1.23060 0.94686 1.00746 0.99466 1.21265 0.94522 0.88626 0.90318 1.44946 1.46525 1.06415 1.34522 1.18995 1.20395 0.86008 1.10250 0.90493 1.24785 0.99008 0.98170 0.98370 1.69938 1.29053 1.30817 1.27075 0.86213 0.77288 0.83578 0.78748 1.21177 1.21646 1.21201 1.21483 1.00047 0.96057 0.84317 1.26652 0.91204 1.04308 0.87027 1.67804 1.11604 1.08140 1.31735 0.92498 0.91748 0.92109 0.88936 0.92268 0.91707 0.92107 0.84240 0.83790 0.92108 0.91711 0.90480 0.91369 0.92351 0.91731 0.94387 0.92934 0.93690 0.90102 0.89848 0.75553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.18 37.16 0.34 -0.60 16 2 C -0.05 -0.39 3.23 -91.77 -0.30 -0.68 16 3 C -0.15 -0.85 8.62 37.16 0.32 -0.53 16 4 C 0.15 1.56 5.79 -82.51 -0.48 1.08 16 5 C -0.18 -1.74 9.16 -39.49 -0.36 -2.10 16 6 C -0.02 -0.18 9.72 -38.87 -0.38 -0.56 16 7 C -0.19 -2.47 5.87 -104.82 -0.62 -3.09 16 8 C 0.55 8.17 7.50 -12.34 -0.09 8.08 16 9 O -0.54 -9.42 16.09 5.32 0.09 -9.33 16 10 N -0.58 -8.24 3.20 -233.31 -0.75 -8.98 16 11 C 0.13 1.90 5.51 -5.91 -0.03 1.87 16 12 C -0.14 -2.41 5.23 -27.46 -0.14 -2.55 16 13 C 0.17 3.13 3.67 -66.23 -0.24 2.89 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C -0.12 -1.80 2.88 -90.70 -0.26 -2.06 16 16 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 17 C -0.14 -2.37 5.73 -24.84 -0.14 -2.51 16 18 C 0.18 4.01 5.11 -2.60 -0.01 4.00 16 19 N -0.60 -14.16 2.91 -161.63 -0.47 -14.63 16 20 C -0.23 -6.06 10.31 -15.06 -0.16 -6.21 16 21 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 22 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 23 N -0.92 -26.28 10.36 55.49 0.58 -25.71 16 24 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 C 0.10 1.30 3.71 -6.92 -0.03 1.28 16 29 C 0.06 0.76 8.75 -17.13 -0.15 0.61 16 30 N -0.48 -5.85 10.25 -9.14 -0.09 -5.94 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 0.30 6.48 -51.93 -0.34 -0.03 16 38 H 0.14 0.94 6.29 -52.49 -0.33 0.61 16 39 H 0.14 1.52 7.74 -52.49 -0.41 1.11 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.98 7.94 -51.93 -0.41 0.57 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.07 1.24 6.45 -51.93 -0.33 0.91 16 44 H 0.06 0.95 7.18 -51.93 -0.37 0.58 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.04 0.97 7.66 -51.93 -0.40 0.57 16 47 H 0.05 1.33 7.26 -51.93 -0.38 0.96 16 48 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 49 H 0.08 0.90 5.99 -51.93 -0.31 0.59 16 50 H 0.08 0.96 5.55 -51.94 -0.29 0.68 16 51 H 0.23 2.47 2.37 -111.14 -0.26 2.21 16 LS Contribution 385.76 15.07 5.81 5.81 Total: -1.00 -31.18 385.76 -10.71 -41.89 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.03 Total: 1.64 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.82 Total: -1.38 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.74 Total: -55.26 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.18 -10.71 -41.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036735470.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.562 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds