Wall clock time and date at job start Wed Apr 1 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46839 * 2 1 4 4 C 1.50703 * 109.46968 * 180.02562 * 3 2 1 5 5 C 1.38169 * 119.55528 * 124.99906 * 4 3 2 6 6 C 1.39800 * 119.00115 * 179.97438 * 5 4 3 7 7 C 1.48140 * 120.92171 * 179.97438 * 6 5 4 8 8 O 1.21510 * 120.00405 * 320.58901 * 7 6 5 9 9 N 1.34785 * 119.99788 * 140.59374 * 7 6 5 10 10 C 1.46522 * 120.97306 * 354.17391 * 9 7 6 11 11 C 1.51787 * 110.13207 * 233.74601 * 10 9 7 12 12 C 1.49506 * 115.07206 * 318.38995 * 11 10 9 13 13 H 1.08995 * 105.92598 * 157.46182 * 12 11 10 14 14 C 1.52675 * 116.96394 * 40.06176 * 12 11 10 15 15 H 1.09002 * 112.03303 * 83.77259 * 14 12 11 16 16 C 1.56124 * 101.71037 * 203.76512 * 14 12 11 17 17 C 1.55091 * 101.11790 * 37.83680 * 16 14 12 18 18 N 1.46252 * 113.52146 * 272.75624 * 12 11 10 19 19 C 1.36936 * 125.96347 * 315.01913 * 18 12 11 20 20 H 1.08001 * 119.99782 * 0.02562 * 19 18 12 21 21 C 1.38812 * 120.00401 * 179.97438 * 19 18 12 22 22 N 1.31625 * 119.99822 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00269 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47092 * 60.00344 * 23 21 19 25 25 H 1.48495 * 109.46970 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47111 * 300.00557 * 23 21 19 27 27 C 1.45041 * 120.58896 * 174.74088 * 9 7 6 28 28 C 1.39837 * 118.15316 * 0.24957 * 6 5 4 29 29 C 1.38131 * 119.00383 * 359.47856 * 28 6 5 30 30 N 1.31803 * 119.54818 * 304.97239 * 4 3 2 31 31 H 1.09006 * 109.47222 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47269 * 299.99595 * 1 2 3 33 33 H 1.08994 * 109.47640 * 60.00187 * 1 2 3 34 34 H 1.09000 * 109.46697 * 239.99938 * 2 1 3 35 35 H 1.08997 * 109.46953 * 120.00069 * 2 1 3 36 36 H 1.08996 * 109.47330 * 59.99728 * 3 2 1 37 37 H 1.09003 * 109.47093 * 299.99521 * 3 2 1 38 38 H 1.07997 * 120.49994 * 359.97438 * 5 4 3 39 39 H 1.09003 * 109.36097 * 113.55234 * 10 9 7 40 40 H 1.08997 * 109.36615 * 353.95789 * 10 9 7 41 41 H 1.09006 * 108.36399 * 196.93531 * 11 10 9 42 42 H 1.09002 * 108.22147 * 79.73499 * 11 10 9 43 43 H 1.09006 * 111.09738 * 155.80942 * 16 14 12 44 44 H 1.08997 * 111.09658 * 279.85920 * 16 14 12 45 45 H 1.09001 * 110.35224 * 81.82035 * 17 16 14 46 46 H 1.09003 * 110.34626 * 204.09781 * 17 16 14 47 47 H 0.96994 * 119.99821 * 179.97438 * 22 21 19 48 48 H 1.09003 * 110.03144 * 0.95459 * 27 9 7 49 49 H 1.08999 * 108.14327 * 241.29371 * 27 9 7 50 50 H 1.07994 * 120.50160 * 179.72780 * 28 6 5 51 51 H 1.07998 * 119.55629 * 180.26933 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2281 2.1321 -0.9854 6 6 5.6260 2.1248 -0.9746 7 6 6.3991 2.8492 -2.0101 8 8 6.0227 2.8419 -3.1654 9 7 7.5200 3.5163 -1.6706 10 6 7.9250 3.6459 -0.2685 11 6 8.1420 5.1072 0.0797 12 6 8.8506 5.9088 -0.9646 13 1 8.5777 6.9479 -0.7804 14 6 8.4761 5.6359 -2.4193 15 1 7.5874 6.1890 -2.7234 16 6 9.7564 6.1176 -3.1719 17 6 10.8694 5.6485 -2.1990 18 7 10.3077 5.8610 -0.8483 19 6 11.0267 5.9919 0.3097 20 1 10.5153 6.1458 1.2484 21 6 12.4129 5.9257 0.2774 22 7 13.0362 5.7376 -0.8666 23 14 13.3937 6.1035 1.8572 24 1 13.0053 5.0280 2.8046 25 1 14.8435 5.9972 1.5543 26 1 13.1118 7.4272 2.4684 27 6 8.3480 4.1341 -2.6886 28 6 6.2743 1.4099 0.0374 29 6 5.5144 0.7531 0.9857 30 7 4.1974 0.7852 0.9386 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6766 1.9563 -0.8901 38 1 3.6887 2.6686 -1.7519 39 1 8.8515 3.0947 -0.1075 40 1 7.1457 3.2335 0.3724 41 1 8.7198 5.1583 1.0026 42 1 7.1684 5.5628 0.2604 43 1 9.8498 5.6271 -4.1409 44 1 9.7624 7.2020 -3.2815 45 1 11.0896 4.5925 -2.3558 46 1 11.7692 6.2485 -2.3349 47 1 14.0048 5.6917 -0.8893 48 1 7.9085 3.9768 -3.6736 49 1 9.3343 3.6718 -2.6506 50 1 7.3529 1.3751 0.0793 51 1 6.0059 0.2019 1.7737 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036742955.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:34 Heat of formation + Delta-G solvation = 26.561203 kcal Electronic energy + Delta-G solvation = -30590.311085 eV Core-core repulsion = 26683.072137 eV Total energy + Delta-G solvation = -3907.238948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.05183 -39.80547 -38.23022 -35.63375 -35.22677 -33.17591 -32.44391 -31.90747 -31.58374 -29.39484 -27.88648 -27.26136 -25.91952 -24.57514 -23.48269 -23.17399 -22.55880 -21.61042 -20.20839 -19.80345 -18.42283 -17.46148 -16.84825 -16.30753 -16.29937 -15.93462 -15.43710 -15.14883 -14.99867 -14.92884 -14.37132 -14.22240 -14.06776 -13.99735 -13.74549 -13.20142 -13.13232 -12.91637 -12.66471 -12.39794 -12.33935 -12.17548 -11.75412 -11.54681 -11.52394 -11.39134 -11.25218 -11.05881 -10.98164 -10.79928 -10.61866 -10.29512 -10.22975 -10.18262 -9.99686 -9.92482 -9.69687 -9.60356 -9.46501 -9.12119 -8.68246 -8.37394 -6.87014 -5.73058 -3.12296 0.66408 0.86879 2.68628 3.04865 3.34949 3.39936 3.41237 3.57330 4.00623 4.25419 4.42329 4.45188 4.72236 4.77209 4.78839 4.91381 4.95271 5.06941 5.17227 5.22697 5.27307 5.33659 5.37383 5.45520 5.47329 5.50002 5.50617 5.53579 5.62150 5.70299 5.76532 5.77866 5.84645 5.88495 5.96213 6.04091 6.05889 6.16101 6.23151 6.26803 6.38182 6.40368 6.53209 6.61676 6.67283 6.86479 6.91632 7.44636 7.49146 7.56640 7.72582 7.79773 8.11836 8.27767 9.14822 9.77198 10.43794 11.32828 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.002622 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.426811 B =10674.748357 C =11702.481243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.068 4.068 4 C 0.126 3.874 5 C -0.121 4.121 6 C -0.072 4.072 7 C 0.555 3.445 8 O -0.538 6.538 9 N -0.588 5.588 10 C 0.107 3.893 11 C -0.136 4.136 12 C 0.171 3.829 13 H 0.011 0.989 14 C -0.106 4.106 15 H 0.077 0.923 16 C -0.142 4.142 17 C 0.156 3.844 18 N -0.593 5.593 19 C -0.223 4.223 20 H 0.077 0.923 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.912 3.088 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.119 3.881 28 C -0.149 4.149 29 C 0.101 3.899 30 N -0.470 5.470 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.141 0.859 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.014 0.986 46 H 0.099 0.901 47 H 0.253 0.747 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.146 0.854 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.496 -8.599 0.902 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.106 4.106 4 C -0.012 4.012 5 C -0.142 4.142 6 C -0.083 4.083 7 C 0.342 3.658 8 O -0.417 6.417 9 N -0.318 5.318 10 C -0.016 4.016 11 C -0.176 4.176 12 C 0.063 3.937 13 H 0.028 0.972 14 C -0.126 4.126 15 H 0.095 0.905 16 C -0.182 4.182 17 C 0.032 3.968 18 N -0.318 5.318 19 C -0.351 4.351 20 H 0.095 0.905 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.004 4.004 28 C -0.169 4.169 29 C -0.056 4.056 30 N -0.180 5.180 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.159 0.841 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.032 0.968 46 H 0.116 0.884 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.096 0.904 50 H 0.164 0.836 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -18.886 -9.021 0.994 20.954 hybrid contribution 1.251 0.589 0.323 1.420 sum -17.635 -8.433 1.318 19.592 Atomic orbital electron populations 1.21787 0.95637 1.01746 1.01818 1.21436 0.95525 0.95556 1.02892 1.20589 0.88065 0.98589 1.03372 1.21225 0.96863 0.92755 0.90312 1.22042 0.93028 0.99699 0.99403 1.20353 0.94394 0.98075 0.95466 1.18242 0.80382 0.79353 0.87780 1.90760 1.68440 1.62697 1.19756 1.47497 1.23575 1.51796 1.08921 1.21696 1.00582 0.98696 0.80585 1.21267 1.00080 0.94224 1.02026 1.19446 0.86480 0.96413 0.91338 0.97168 1.22300 0.98551 0.94876 0.96854 0.90489 1.23296 0.95930 1.00455 0.98471 1.21925 0.94876 0.98200 0.81815 1.44492 0.98352 1.84704 1.04283 1.18908 0.88351 1.42270 0.85579 0.90543 1.24764 0.96378 1.02176 0.97100 1.69834 1.07753 1.56116 1.23061 0.86203 0.79264 0.77926 0.82384 1.21243 1.21616 1.21196 1.21448 0.94651 0.92916 0.91355 1.22514 1.02224 0.97671 0.94490 1.22735 0.89091 0.96265 0.97505 1.67325 1.10154 1.17013 1.23501 0.92657 0.92623 0.92732 0.92170 0.90794 0.89801 0.90203 0.84082 0.90639 0.90005 0.89676 0.93259 0.91990 0.91864 0.96760 0.88356 0.93663 0.89460 0.90391 0.83649 0.82006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.91 5.79 -26.73 -0.15 -1.06 16 3 C -0.07 -0.56 5.61 -27.88 -0.16 -0.72 16 4 C 0.13 1.37 6.18 -82.63 -0.51 0.86 16 5 C -0.12 -1.44 9.36 -39.02 -0.37 -1.81 16 6 C -0.07 -0.94 5.17 -104.65 -0.54 -1.48 16 7 C 0.55 8.71 7.37 -12.19 -0.09 8.62 16 8 O -0.54 -9.91 16.34 5.36 0.09 -9.82 16 9 N -0.59 -9.18 2.93 -176.49 -0.52 -9.70 16 10 C 0.11 1.57 5.02 -4.65 -0.02 1.55 16 11 C -0.14 -2.29 5.59 -29.07 -0.16 -2.45 16 12 C 0.17 3.34 2.66 -69.96 -0.19 3.16 16 13 H 0.01 0.22 8.08 -51.93 -0.42 -0.20 16 14 C -0.11 -1.84 3.72 -89.06 -0.33 -2.17 16 15 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 16 C -0.14 -2.59 6.46 -23.95 -0.15 -2.75 16 17 C 0.16 3.58 5.35 -2.21 -0.01 3.56 16 18 N -0.59 -13.99 3.30 -165.67 -0.55 -14.54 16 19 C -0.22 -5.76 9.57 -15.06 -0.14 -5.91 16 20 H 0.08 1.90 7.01 -52.49 -0.37 1.53 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 22 N -0.92 -25.71 10.18 55.49 0.56 -25.14 16 23 Si 0.91 21.20 29.55 -169.99 -5.02 16.17 16 24 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.12 1.98 5.42 -4.77 -0.03 1.95 16 28 C -0.15 -1.66 7.51 -39.02 -0.29 -1.95 16 29 C 0.10 1.03 11.17 -17.59 -0.20 0.84 16 30 N -0.47 -5.34 9.85 -9.52 -0.09 -5.43 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.64 7.94 -51.93 -0.41 0.23 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.56 7.87 -51.93 -0.41 0.15 16 38 H 0.14 1.57 7.95 -52.49 -0.42 1.15 16 39 H 0.08 1.18 8.13 -51.93 -0.42 0.76 16 40 H 0.08 1.03 4.69 -51.93 -0.24 0.79 16 41 H 0.08 1.53 6.60 -51.93 -0.34 1.19 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.00 7.98 -51.93 -0.41 0.59 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.01 0.35 7.10 -51.93 -0.37 -0.02 16 46 H 0.10 2.57 6.10 -51.93 -0.32 2.25 16 47 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 48 H 0.09 1.45 6.97 -51.93 -0.36 1.08 16 49 H 0.08 1.40 6.49 -51.93 -0.34 1.07 16 50 H 0.15 1.49 6.63 -52.49 -0.35 1.14 16 51 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 391.88 15.07 5.91 5.91 Total: -1.00 -30.22 391.88 -10.82 -41.04 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.12 Total: 2.17 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: -3.07 Total: -0.66 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.59 Total: -54.82 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.09 Total: -9.82 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.22 -10.82 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036742955.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.602 kcal (2) G-P(sol) polarization free energy of solvation -30.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds