Wall clock time and date at job start Wed Apr 1 2020 02:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46713 * 2 1 4 4 C 1.50706 * 109.47086 * 179.97438 * 3 2 1 5 5 C 1.38174 * 119.55150 * 125.30034 * 4 3 2 6 6 C 1.39793 * 119.00034 * 180.27466 * 5 4 3 7 7 C 1.48149 * 120.92585 * 179.70695 * 6 5 4 8 8 O 1.21520 * 119.99917 * 44.38339 * 7 6 5 9 9 N 1.34774 * 120.00283 * 224.38064 * 7 6 5 10 10 C 1.46596 * 119.68463 * 356.50610 * 9 7 6 11 11 C 1.53956 * 110.57673 * 132.19483 * 10 9 7 12 12 C 1.51516 * 107.34548 * 51.05568 * 11 10 9 13 13 H 1.08993 * 108.80744 * 53.44037 * 12 11 10 14 14 C 1.55095 * 107.77025 * 295.29657 * 12 11 10 15 15 H 1.08996 * 111.33496 * 309.00140 * 14 12 11 16 16 C 1.53740 * 100.32328 * 191.11542 * 14 12 11 17 17 C 1.55287 * 101.84001 * 38.94903 * 16 14 12 18 18 N 1.45466 * 117.34749 * 178.09507 * 12 11 10 19 19 C 1.36942 * 126.40479 * 329.40815 * 18 12 11 20 20 H 1.07998 * 119.99637 * 18.84144 * 19 18 12 21 21 C 1.38807 * 119.99858 * 198.84074 * 19 18 12 22 22 N 1.31618 * 120.00288 * 182.17151 * 21 19 18 23 23 Si 1.86800 * 120.00353 * 2.17063 * 21 19 18 24 24 H 1.48497 * 109.47476 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.46990 * 59.99658 * 23 21 19 26 26 H 1.48500 * 109.47205 * 300.00474 * 23 21 19 27 27 C 1.48163 * 119.16960 * 176.31089 * 9 7 6 28 28 C 1.39837 * 118.15337 * 359.43935 * 6 5 4 29 29 C 1.38130 * 119.00185 * 0.27018 * 28 6 5 30 30 N 1.31792 * 119.55502 * 305.00165 * 4 3 2 31 31 H 1.09004 * 109.46753 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47266 * 299.99883 * 1 2 3 33 33 H 1.09001 * 109.47127 * 60.00392 * 1 2 3 34 34 H 1.08994 * 109.47266 * 240.00117 * 2 1 3 35 35 H 1.09001 * 109.47127 * 119.99608 * 2 1 3 36 36 H 1.08997 * 109.47863 * 59.99902 * 3 2 1 37 37 H 1.09000 * 109.47495 * 299.99503 * 3 2 1 38 38 H 1.08001 * 120.49885 * 359.97438 * 5 4 3 39 39 H 1.09002 * 109.25524 * 11.91309 * 10 9 7 40 40 H 1.09000 * 109.26062 * 252.47876 * 10 9 7 41 41 H 1.09000 * 109.88135 * 291.59615 * 11 10 9 42 42 H 1.08997 * 109.88038 * 170.51997 * 11 10 9 43 43 H 1.08999 * 110.95693 * 280.80862 * 16 14 12 44 44 H 1.08999 * 110.95670 * 157.08594 * 16 14 12 45 45 H 1.09005 * 109.91849 * 218.17068 * 17 16 14 46 46 H 1.08999 * 110.08901 * 96.96692 * 17 16 14 47 47 H 0.97007 * 119.99574 * 354.80466 * 22 21 19 48 48 H 1.08998 * 110.13922 * 112.32746 * 27 9 7 49 49 H 1.08997 * 110.41436 * 350.47827 * 27 9 7 50 50 H 1.08003 * 120.50300 * 180.29859 * 28 6 5 51 51 H 1.08004 * 119.54771 * 180.02562 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2288 2.1371 -0.9802 6 6 5.6267 2.1246 -0.9720 7 6 6.4006 2.8491 -2.0068 8 8 6.0796 3.9764 -2.3275 9 7 7.4608 2.2581 -2.5926 10 6 7.8889 0.9288 -2.1468 11 6 8.1139 -0.0002 -3.3537 12 6 9.0208 0.7302 -4.3231 13 1 9.9152 1.0545 -3.7912 14 6 8.2567 1.9779 -4.8376 15 1 7.2649 1.7126 -5.2035 16 6 9.1794 2.4109 -5.9885 17 6 9.5977 1.0432 -6.5933 18 7 9.4115 0.0246 -5.5337 19 6 9.5716 -1.3286 -5.6699 20 1 9.1251 -2.0001 -4.9516 21 6 10.3077 -1.8369 -6.7313 22 7 10.4259 -3.1386 -6.8866 23 14 11.1306 -0.6738 -7.9393 24 1 11.8504 -1.4610 -8.9724 25 1 12.0962 0.1907 -7.2145 26 1 10.0999 0.1737 -8.5909 27 6 8.1713 2.9664 -3.6828 28 6 6.2742 1.4140 0.0434 29 6 5.5136 0.7526 0.9879 30 7 4.1967 0.7852 0.9401 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.8934 -0.5138 0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6767 1.9563 -0.8900 38 1 3.6899 2.6773 -1.7444 39 1 7.1208 0.5011 -1.5023 40 1 8.8186 1.0200 -1.5852 41 1 7.1607 -0.2223 -3.8334 42 1 8.5893 -0.9248 -3.0262 43 1 10.0470 2.9516 -5.6102 44 1 8.6364 3.0105 -6.7190 45 1 10.6440 1.0759 -6.8972 46 1 8.9693 0.8055 -7.4516 47 1 10.0631 -3.7416 -6.2189 48 1 9.1726 3.2483 -3.3571 49 1 7.6131 3.8513 -3.9884 50 1 7.3529 1.3830 0.0889 51 1 6.0046 0.2014 1.7763 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036742956.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:41 Heat of formation + Delta-G solvation = 35.355635 kcal Electronic energy + Delta-G solvation = -30470.613187 eV Core-core repulsion = 26563.755593 eV Total energy + Delta-G solvation = -3906.857593 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.18548 -39.92031 -38.48967 -35.87452 -35.42773 -33.29725 -32.57425 -31.77429 -31.68095 -30.31712 -28.44680 -27.34682 -25.76303 -24.33751 -23.37495 -23.10001 -22.56832 -21.61043 -20.63655 -20.00836 -19.26896 -17.71750 -17.13875 -16.73359 -16.37551 -16.10776 -15.54526 -15.28556 -15.17036 -15.06892 -14.79739 -14.31185 -14.20047 -14.05929 -13.86399 -13.37842 -13.18323 -13.11265 -12.88890 -12.83180 -12.51341 -12.44333 -12.17291 -12.00288 -11.58640 -11.50879 -11.44360 -11.17557 -11.01162 -10.96527 -10.87276 -10.67644 -10.41596 -10.09828 -9.96861 -9.88511 -9.56233 -9.21263 -9.19731 -9.10500 -8.79206 -8.75578 -7.07981 -6.30281 -3.32549 0.57553 0.77400 2.48763 2.77794 3.38355 3.43274 3.45675 3.66225 3.92918 4.06099 4.36662 4.56398 4.62015 4.63677 4.68621 4.77073 4.83952 4.84220 4.92452 5.00693 5.07920 5.21437 5.22730 5.26053 5.30847 5.41674 5.43534 5.47046 5.48327 5.48741 5.56632 5.60920 5.72010 5.74207 5.78119 5.80419 5.90815 5.93476 5.97679 6.04137 6.04812 6.12761 6.21047 6.31138 6.37946 6.40301 6.58319 6.71716 6.83992 7.19385 7.64378 7.68535 7.90900 8.28219 8.98622 9.53124 10.21544 11.16354 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.002689 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.939152 B =10408.975105 C =11209.415150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.069 4.069 4 C 0.130 3.870 5 C -0.122 4.122 6 C -0.073 4.073 7 C 0.555 3.445 8 O -0.535 6.535 9 N -0.597 5.597 10 C 0.098 3.902 11 C -0.128 4.128 12 C 0.170 3.830 13 H 0.025 0.975 14 C -0.127 4.127 15 H 0.082 0.918 16 C -0.118 4.118 17 C 0.098 3.902 18 N -0.604 5.604 19 C -0.318 4.318 20 H 0.077 0.923 21 C -0.023 4.023 22 N -0.932 5.932 23 Si 1.081 2.919 24 H -0.302 1.302 25 H -0.297 1.297 26 H -0.286 1.286 27 C 0.129 3.871 28 C -0.153 4.153 29 C 0.102 3.898 30 N -0.469 5.469 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.141 0.859 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.037 0.963 46 H 0.051 0.949 47 H 0.260 0.740 48 H 0.074 0.926 49 H 0.094 0.906 50 H 0.145 0.855 51 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.787 11.013 15.054 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.107 4.107 4 C -0.008 4.008 5 C -0.142 4.142 6 C -0.084 4.084 7 C 0.343 3.657 8 O -0.413 6.413 9 N -0.329 5.329 10 C -0.025 4.025 11 C -0.167 4.167 12 C 0.061 3.939 13 H 0.043 0.957 14 C -0.148 4.148 15 H 0.101 0.899 16 C -0.157 4.157 17 C -0.026 4.026 18 N -0.330 5.330 19 C -0.446 4.446 20 H 0.094 0.906 21 C -0.222 4.222 22 N -0.573 5.573 23 Si 0.916 3.084 24 H -0.231 1.231 25 H -0.226 1.226 26 H -0.213 1.213 27 C 0.007 3.993 28 C -0.173 4.173 29 C -0.055 4.055 30 N -0.179 5.179 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.159 0.841 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.092 0.908 49 H 0.113 0.887 50 H 0.163 0.837 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.495 11.082 14.075 21.841 hybrid contribution -0.189 0.253 0.801 0.861 sum -12.684 11.335 14.876 22.598 Atomic orbital electron populations 1.21785 0.95579 1.01849 1.01778 1.21444 0.95608 0.95417 1.03007 1.20604 0.87943 0.98711 1.03410 1.21249 0.96955 0.92462 0.90113 1.22035 0.92944 0.99260 0.99976 1.20332 0.94489 0.97393 0.96185 1.18323 0.80130 0.85879 0.81407 1.90777 1.68601 1.18189 1.63712 1.48348 1.29719 1.18487 1.36303 1.22271 1.00584 0.81880 0.97720 1.21861 1.00993 0.98468 0.95378 1.20526 0.93801 0.90513 0.89018 0.95734 1.22645 1.00140 0.97136 0.94847 0.89939 1.22397 0.98708 0.97354 0.97210 1.22527 0.98570 0.88194 0.93280 1.44480 1.81638 1.02632 1.04246 1.20102 1.30357 0.79383 1.14743 0.90572 1.25918 0.97259 0.98971 1.00060 1.70919 1.48344 1.01373 1.36673 0.83705 0.76037 0.73030 0.75676 1.23084 1.22579 1.21323 1.21726 0.96787 0.95394 0.85363 1.22459 1.02038 0.97541 0.95300 1.22739 0.89140 0.96379 0.97193 1.67325 1.10152 1.17171 1.23262 0.92562 0.92660 0.92716 0.92058 0.90760 0.89775 0.90154 0.84076 0.89122 0.91082 0.91508 0.90100 0.91267 0.91135 0.94557 0.93147 0.92945 0.90763 0.88734 0.83739 0.81967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.12 -0.93 5.79 -26.73 -0.15 -1.08 16 3 C -0.07 -0.55 5.61 -27.88 -0.16 -0.71 16 4 C 0.13 1.35 6.18 -82.63 -0.51 0.84 16 5 C -0.12 -1.37 9.41 -39.02 -0.37 -1.74 16 6 C -0.07 -0.87 5.14 -104.65 -0.54 -1.41 16 7 C 0.56 7.82 7.33 -12.19 -0.09 7.73 16 8 O -0.54 -9.02 16.35 5.35 0.09 -8.93 16 9 N -0.60 -8.00 3.01 -173.12 -0.52 -8.52 16 10 C 0.10 1.21 4.94 -3.49 -0.02 1.19 16 11 C -0.13 -2.08 5.40 -26.98 -0.15 -2.23 16 12 C 0.17 3.16 2.58 -68.13 -0.18 2.98 16 13 H 0.03 0.47 7.96 -51.93 -0.41 0.06 16 14 C -0.13 -2.03 2.79 -89.51 -0.25 -2.28 16 15 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 16 C -0.12 -1.88 6.54 -25.13 -0.16 -2.05 16 17 C 0.10 2.07 4.70 -1.92 -0.01 2.06 16 18 N -0.60 -14.13 3.25 -163.27 -0.53 -14.66 16 19 C -0.32 -8.77 10.24 -15.06 -0.15 -8.92 16 20 H 0.08 2.20 7.45 -52.49 -0.39 1.80 16 21 C -0.02 -0.66 5.50 -17.43 -0.10 -0.75 16 22 N -0.93 -28.91 13.70 55.49 0.76 -28.15 16 23 Si 1.08 26.61 24.58 -169.99 -4.18 22.43 16 24 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 25 H -0.30 -7.01 6.60 56.52 0.37 -6.63 16 26 H -0.29 -6.45 5.43 56.52 0.31 -6.14 16 27 C 0.13 1.76 6.00 -3.51 -0.02 1.74 16 28 C -0.15 -1.49 7.43 -39.02 -0.29 -1.78 16 29 C 0.10 0.95 11.17 -17.60 -0.20 0.75 16 30 N -0.47 -5.04 9.85 -9.52 -0.09 -5.14 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.65 7.94 -51.93 -0.41 0.24 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.55 7.87 -51.93 -0.41 0.14 16 38 H 0.14 1.49 7.95 -52.49 -0.42 1.07 16 39 H 0.09 0.99 4.40 -51.93 -0.23 0.76 16 40 H 0.07 0.78 8.10 -51.93 -0.42 0.35 16 41 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 42 H 0.08 1.39 7.75 -51.93 -0.40 0.99 16 43 H 0.07 0.99 8.12 -51.93 -0.42 0.57 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.04 0.80 3.98 -51.93 -0.21 0.60 16 46 H 0.05 1.11 6.50 -51.93 -0.34 0.78 16 47 H 0.26 7.97 8.73 -40.82 -0.36 7.62 16 48 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 49 H 0.09 1.31 7.02 -51.93 -0.36 0.94 16 50 H 0.14 1.15 6.57 -52.48 -0.34 0.80 16 51 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 388.12 15.07 5.85 5.85 Total: -1.00 -33.38 388.12 -9.86 -43.25 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -8.27 Total: 0.14 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -2.97 Total: -6.27 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.39 Total: -56.47 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 26.61 SS G_CDS: -4.18 Total: 22.43 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.38 -9.86 -43.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036742956.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.601 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds