Wall clock time and date at job start Wed Apr 1 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47035 * 2 1 4 4 C 1.50700 * 109.47010 * 119.99697 * 2 1 3 5 5 O 1.21280 * 120.00348 * 5.89011 * 4 2 1 6 6 N 1.34783 * 119.99923 * 185.88768 * 4 2 1 7 7 C 1.46595 * 119.68244 * 354.24267 * 6 4 2 8 8 C 1.53952 * 110.57370 * 227.84564 * 7 6 4 9 9 C 1.51520 * 107.34627 * 308.94812 * 8 7 6 10 10 H 1.08997 * 109.28067 * 306.29660 * 9 8 7 11 11 C 1.55360 * 107.79501 * 64.85584 * 9 8 7 12 12 H 1.09009 * 111.50844 * 50.62082 * 11 9 8 13 13 C 1.53750 * 100.21996 * 168.51623 * 11 9 8 14 14 C 1.55285 * 101.84429 * 320.90775 * 13 11 9 15 15 N 1.45470 * 116.86991 * 181.61119 * 9 8 7 16 16 C 1.36938 * 126.40527 * 30.87089 * 15 9 8 17 17 H 1.08005 * 120.00098 * 0.02562 * 16 15 9 18 18 C 1.38810 * 120.00191 * 179.97438 * 16 15 9 19 19 N 1.31618 * 119.99802 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00093 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47111 * 90.00107 * 20 18 16 22 22 H 1.48507 * 109.47011 * 210.00391 * 20 18 16 23 23 H 1.48500 * 109.47270 * 329.99962 * 20 18 16 24 24 C 1.48922 * 119.81994 * 173.94224 * 6 4 2 25 25 C 1.50700 * 109.47447 * 239.99971 * 2 1 3 26 26 C 1.38672 * 120.41693 * 67.13559 * 25 2 1 27 27 C 1.38631 * 118.41818 * 179.78312 * 26 25 2 28 28 C 1.38228 * 119.16082 * 0.51441 * 27 26 25 29 29 N 1.31853 * 120.76161 * 359.72689 * 28 27 26 30 30 C 1.31882 * 121.72736 * 359.97438 * 29 28 27 31 31 H 1.09000 * 109.47198 * 295.02474 * 1 2 3 32 32 H 1.08992 * 109.46836 * 55.02688 * 1 2 3 33 33 H 1.09001 * 109.46468 * 175.01995 * 1 2 3 34 34 H 1.08998 * 109.47202 * 185.49410 * 3 2 1 35 35 H 1.08994 * 109.47109 * 305.49651 * 3 2 1 36 36 H 1.09001 * 109.47137 * 65.49942 * 3 2 1 37 37 H 1.09001 * 109.25701 * 107.56641 * 7 6 4 38 38 H 1.09003 * 109.25444 * 348.12334 * 7 6 4 39 39 H 1.08999 * 109.88414 * 189.48539 * 8 7 6 40 40 H 1.09001 * 109.94506 * 68.43903 * 8 7 6 41 41 H 1.09001 * 110.95150 * 79.04608 * 13 11 9 42 42 H 1.09004 * 110.95521 * 202.76696 * 13 11 9 43 43 H 1.08999 * 109.92129 * 263.13051 * 14 13 11 44 44 H 1.09002 * 110.09076 * 141.91612 * 14 13 11 45 45 H 0.96997 * 120.00080 * 179.97438 * 19 18 16 46 46 H 1.08999 * 109.91793 * 8.93313 * 24 6 4 47 47 H 1.08996 * 110.80819 * 246.97165 * 24 6 4 48 48 H 1.08001 * 120.78949 * 0.02562 * 26 25 2 49 49 H 1.08000 * 120.41806 * 180.21890 * 27 26 25 50 50 H 1.07994 * 119.61587 * 179.70033 * 28 27 26 51 51 H 1.08001 * 119.61425 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 1.2495 -1.2637 1.9734 6 7 3.3517 -0.7308 1.5055 7 6 4.3030 -0.1711 0.5407 8 6 5.4697 -1.1471 0.3029 9 6 6.0125 -1.5418 1.6613 10 1 6.2547 -0.6424 2.2273 11 6 4.9001 -2.3300 2.4064 12 1 4.4956 -3.1314 1.7880 13 6 5.7078 -2.8901 3.5887 14 6 7.0549 -3.2571 2.9089 15 7 7.1559 -2.4409 1.6765 16 6 8.1412 -2.5188 0.7286 17 1 8.1127 -1.8702 -0.1345 18 6 9.1771 -3.4307 0.8776 19 7 9.2121 -4.2208 1.9297 20 14 10.5215 -3.5364 -0.4150 21 1 11.6224 -2.6047 -0.0615 22 1 11.0464 -4.9245 -0.4709 23 1 9.9643 -3.1643 -1.7403 24 6 3.8318 -1.3150 2.7884 25 6 2.0324 -0.7104 -1.2304 26 6 1.8284 -0.1645 -2.4888 27 6 2.3121 -0.8508 -3.5919 28 6 2.9674 -2.0532 -3.4031 29 7 3.1389 -2.5447 -2.1917 30 6 2.6975 -1.9165 -1.1194 31 1 -0.3633 0.4347 0.9312 32 1 -0.3633 0.5890 -0.8420 33 1 -0.3632 -1.0238 -0.0892 34 1 3.1255 1.4441 -0.0984 35 1 1.5986 1.9839 -0.8366 36 1 1.7593 1.9271 0.9351 37 1 4.6947 0.7700 0.9267 38 1 3.7907 0.0135 -0.4035 39 1 6.2497 -0.6574 -0.2800 40 1 5.1129 -2.0315 -0.2249 41 1 5.8529 -2.1301 4.3565 42 1 5.2271 -3.7756 4.0046 43 1 7.0659 -4.3169 2.6545 44 1 7.8858 -3.0268 3.5759 45 1 9.9358 -4.8582 2.0336 46 1 3.0087 -1.8131 3.3007 47 1 4.2603 -0.5439 3.4286 48 1 1.3087 0.7748 -2.6063 49 1 2.1743 -0.4535 -4.5867 50 1 3.3428 -2.5963 -4.2577 51 1 2.8571 -2.3501 -0.1432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036756413.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:13 Heat of formation + Delta-G solvation = 46.923326 kcal Electronic energy + Delta-G solvation = -32406.643761 eV Core-core repulsion = 28500.287781 eV Total energy + Delta-G solvation = -3906.355980 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.55954 -39.64465 -38.43123 -35.92030 -35.30566 -32.69612 -32.14306 -31.52682 -30.45897 -29.63407 -28.33667 -27.26458 -25.38170 -24.59318 -23.62069 -23.32994 -22.35175 -21.40348 -20.07311 -19.61659 -18.83175 -17.62792 -16.95193 -16.42187 -16.28712 -15.86375 -15.25613 -14.97818 -14.80485 -14.50368 -14.34414 -13.99110 -13.89175 -13.63092 -13.41551 -13.20669 -12.95229 -12.87600 -12.56232 -12.52716 -12.39915 -12.32017 -12.03543 -11.67463 -11.58187 -11.45283 -11.42986 -11.17012 -10.82280 -10.73368 -10.68569 -10.13877 -10.06485 -9.94826 -9.85780 -9.63667 -9.60444 -9.45411 -9.41599 -8.99255 -8.59712 -8.52326 -6.81005 -5.68931 -3.01781 0.93772 1.14241 2.56865 2.96721 3.41224 3.46312 3.48241 3.67652 4.17795 4.19071 4.51194 4.55727 4.65532 4.74350 4.77117 4.83034 4.99010 5.01693 5.10666 5.24137 5.31179 5.34577 5.36087 5.46289 5.50840 5.55035 5.58359 5.61277 5.63359 5.69515 5.79383 5.84681 5.89667 5.96017 6.00831 6.03699 6.04059 6.16693 6.20729 6.24983 6.35361 6.48382 6.54609 6.63272 6.68251 6.83229 7.09520 7.44400 7.57589 7.63883 7.83735 7.91981 8.15713 8.27070 9.22039 9.85712 10.53564 11.43654 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.004109 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.422450 B = 6813.067401 C = 8281.021466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.036 4.036 3 C -0.155 4.155 4 C 0.522 3.478 5 O -0.540 6.540 6 N -0.605 5.605 7 C 0.097 3.903 8 C -0.132 4.132 9 C 0.170 3.830 10 H 0.019 0.981 11 C -0.124 4.124 12 H 0.080 0.920 13 C -0.136 4.136 14 C 0.177 3.823 15 N -0.594 5.594 16 C -0.223 4.223 17 H 0.077 0.923 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.126 3.874 25 C -0.131 4.131 26 C -0.067 4.067 27 C -0.173 4.173 28 C 0.098 3.902 29 N -0.470 5.470 30 C 0.114 3.886 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.054 0.946 44 H 0.038 0.962 45 H 0.252 0.748 46 H 0.090 0.910 47 H 0.072 0.928 48 H 0.135 0.865 49 H 0.135 0.865 50 H 0.156 0.844 51 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.753 11.746 -6.604 21.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.040 4.040 3 C -0.212 4.212 4 C 0.309 3.691 5 O -0.417 6.417 6 N -0.338 5.338 7 C -0.026 4.026 8 C -0.171 4.171 9 C 0.061 3.939 10 H 0.036 0.964 11 C -0.145 4.145 12 H 0.098 0.902 13 C -0.174 4.174 14 C 0.053 3.947 15 N -0.318 5.318 16 C -0.351 4.351 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.569 5.569 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.005 3.995 25 C -0.133 4.133 26 C -0.093 4.093 27 C -0.193 4.193 28 C -0.059 4.059 29 N -0.178 5.178 30 C -0.044 4.044 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.108 0.892 47 H 0.090 0.910 48 H 0.152 0.848 49 H 0.153 0.847 50 H 0.173 0.827 51 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.479 10.510 -6.151 20.490 hybrid contribution 0.535 0.721 -0.864 1.246 sum -15.944 11.231 -7.015 20.725 Atomic orbital electron populations 1.21659 0.90896 1.03011 1.02342 1.19708 0.97928 0.95990 0.90416 1.22278 1.03012 0.92821 1.03106 1.20325 0.82245 0.79978 0.86589 1.90681 1.55161 1.45091 1.50746 1.48628 1.05477 1.59748 1.19925 1.22273 0.91082 0.96736 0.92461 1.21959 0.96069 0.99342 0.99760 1.20618 0.87403 0.92768 0.93067 0.96404 1.22643 0.95186 0.97583 0.99077 0.90157 1.22712 0.98536 0.99774 0.96425 1.21529 0.90714 0.95926 0.86579 1.44198 1.23400 1.40983 1.23221 1.18965 0.99744 1.16452 0.99984 0.90522 1.24767 0.98909 0.98660 0.98005 1.69935 1.33330 1.25171 1.28440 0.86171 0.82053 0.76959 0.80911 1.21711 1.21708 1.20737 1.21870 0.97616 0.95876 0.84123 1.20519 1.00905 0.97194 0.94697 1.21326 0.97164 0.99493 0.91353 1.22120 1.00467 0.96988 0.99729 1.22884 0.94642 0.93277 0.95070 1.67804 1.17275 1.33873 0.98834 1.22951 0.92338 0.91021 0.98058 0.91317 0.91956 0.91746 0.90338 0.91284 0.91426 0.91697 0.89216 0.90858 0.90721 0.92379 0.92051 0.92741 0.94366 0.93807 0.89166 0.90993 0.84760 0.84704 0.82704 0.82823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 7.61 37.16 0.28 -0.91 16 2 C -0.04 -0.39 0.60 -156.81 -0.09 -0.49 16 3 C -0.16 -1.30 7.71 37.16 0.29 -1.02 16 4 C 0.52 7.32 4.94 -10.98 -0.05 7.27 16 5 O -0.54 -9.17 15.38 5.56 0.09 -9.09 16 6 N -0.60 -8.48 2.37 -171.49 -0.41 -8.89 16 7 C 0.10 1.30 3.44 -3.49 -0.01 1.29 16 8 C -0.13 -2.29 5.30 -26.98 -0.14 -2.43 16 9 C 0.17 3.37 2.57 -67.98 -0.17 3.20 16 10 H 0.02 0.37 7.93 -51.93 -0.41 -0.04 16 11 C -0.12 -2.21 2.84 -89.37 -0.25 -2.47 16 12 H 0.08 1.57 8.12 -51.92 -0.42 1.15 16 13 C -0.14 -2.52 6.54 -25.13 -0.16 -2.68 16 14 C 0.18 4.27 5.45 -1.92 -0.01 4.26 16 15 N -0.59 -14.81 3.35 -163.09 -0.55 -15.36 16 16 C -0.22 -6.11 9.86 -15.06 -0.15 -6.25 16 17 H 0.08 2.03 7.18 -52.48 -0.38 1.65 16 18 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 19 N -0.92 -27.08 10.43 55.49 0.58 -26.50 16 20 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.13 1.89 6.05 -3.09 -0.02 1.87 16 25 C -0.13 -1.47 3.06 -104.48 -0.32 -1.79 16 26 C -0.07 -0.60 9.08 -39.28 -0.36 -0.96 16 27 C -0.17 -1.54 10.11 -39.44 -0.40 -1.93 16 28 C 0.10 1.11 11.18 -17.55 -0.20 0.91 16 29 N -0.47 -6.94 10.36 -13.26 -0.14 -7.08 16 30 C 0.11 1.61 7.36 -17.55 -0.13 1.48 16 31 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 32 H 0.06 0.45 8.05 -51.93 -0.42 0.04 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.69 4.59 -51.93 -0.24 0.45 16 35 H 0.07 0.43 7.32 -51.93 -0.38 0.05 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.79 7.81 -51.93 -0.41 0.39 16 38 H 0.09 1.08 3.00 -51.93 -0.16 0.93 16 39 H 0.07 1.31 7.59 -51.93 -0.39 0.92 16 40 H 0.07 1.43 6.75 -51.93 -0.35 1.08 16 41 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 1.47 7.21 -51.93 -0.37 1.10 16 44 H 0.04 1.01 7.76 -51.93 -0.40 0.61 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.09 1.38 7.01 -51.93 -0.36 1.02 16 47 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 48 H 0.13 0.83 7.34 -52.49 -0.39 0.44 16 49 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 50 H 0.16 1.39 8.06 -52.49 -0.42 0.97 16 51 H 0.15 2.49 5.79 -52.49 -0.30 2.19 16 LS Contribution 378.51 15.07 5.70 5.70 Total: -1.00 -32.43 378.51 -9.64 -42.07 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.89 Total: 2.93 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -2.00 Total: -0.94 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.51 Total: -57.82 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.43 -9.64 -42.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036756413.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.993 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds