Wall clock time and date at job start Wed Apr 1 2020 02:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.50702 * 109.46863 * 119.99892 * 2 1 3 5 5 C 1.38628 * 120.32376 * 119.72462 * 4 2 1 6 6 C 1.38592 * 118.48575 * 179.75718 * 5 4 2 7 7 C 1.39305 * 119.06237 * 0.47207 * 6 5 4 8 8 C 1.48165 * 119.72435 * 179.76950 * 7 6 5 9 9 O 1.21510 * 120.00283 * 8.29933 * 8 7 6 10 10 N 1.34780 * 119.99946 * 188.29510 * 8 7 6 11 11 C 1.47147 * 121.01331 * 10.93550 * 10 8 7 12 12 C 1.53052 * 107.68696 * 122.55583 * 11 10 8 13 13 C 1.51139 * 111.11061 * 54.40096 * 12 11 10 14 14 H 1.09001 * 108.45184 * 184.64230 * 13 12 11 15 15 C 1.53994 * 113.17244 * 304.88270 * 13 12 11 16 16 H 1.09008 * 112.71571 * 284.03393 * 15 13 12 17 17 C 1.55507 * 100.61311 * 164.15960 * 15 13 12 18 18 C 1.54494 * 102.19984 * 322.23636 * 17 15 13 19 19 N 1.46459 * 113.23600 * 64.35270 * 13 12 11 20 20 C 1.36941 * 126.05473 * 29.51952 * 19 13 12 21 21 H 1.08007 * 119.99724 * 5.77538 * 20 19 13 22 22 C 1.38815 * 120.00183 * 185.77804 * 20 19 13 23 23 N 1.31611 * 120.00051 * 351.90975 * 22 20 19 24 24 Si 1.86801 * 120.00055 * 171.91268 * 22 20 19 25 25 H 1.48497 * 109.46925 * 94.97775 * 24 22 20 26 26 H 1.48502 * 109.47004 * 214.98027 * 24 22 20 27 27 H 1.48502 * 109.47243 * 334.97875 * 24 22 20 28 28 C 1.46527 * 121.01358 * 190.65105 * 10 8 7 29 29 N 1.32722 * 120.55165 * 359.79298 * 7 6 5 30 30 C 1.31528 * 121.64170 * 359.97351 * 29 7 6 31 31 H 1.08999 * 109.47060 * 300.00141 * 1 2 3 32 32 H 1.08996 * 109.46890 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46815 * 60.00175 * 1 2 3 34 34 H 1.08997 * 109.47546 * 239.99665 * 2 1 3 35 35 H 1.08999 * 109.47247 * 59.99974 * 3 2 1 36 36 H 1.09005 * 109.47156 * 179.97438 * 3 2 1 37 37 H 1.08998 * 109.47368 * 299.99413 * 3 2 1 38 38 H 1.07998 * 120.75407 * 359.97438 * 5 4 2 39 39 H 1.08008 * 120.46765 * 180.24269 * 6 5 4 40 40 H 1.08997 * 109.81132 * 242.10161 * 11 10 8 41 41 H 1.08997 * 109.81606 * 3.00889 * 11 10 8 42 42 H 1.08998 * 109.14847 * 174.82167 * 12 11 10 43 43 H 1.08999 * 109.14621 * 293.98214 * 12 11 10 44 44 H 1.09003 * 110.53764 * 204.29299 * 17 15 13 45 45 H 1.09010 * 111.42272 * 80.57617 * 17 15 13 46 46 H 1.08996 * 109.90618 * 263.96121 * 18 17 15 47 47 H 1.08999 * 110.05227 * 142.80564 * 18 17 15 48 48 H 0.96999 * 120.00635 * 179.97438 * 23 22 20 49 49 H 1.08995 * 109.34873 * 355.83228 * 28 10 8 50 50 H 1.09005 * 109.34599 * 115.38345 * 28 10 8 51 51 H 1.07997 * 119.54398 * 180.02562 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8250 -1.8414 1.1112 6 6 3.2701 -2.4617 2.2679 7 6 2.8993 -1.9358 3.5034 8 6 3.3626 -2.5902 4.7493 9 8 4.1817 -3.4861 4.6967 10 7 2.8756 -2.1916 5.9412 11 6 1.7196 -1.2848 6.0229 12 6 0.6362 -1.9857 6.8460 13 6 1.1717 -2.4246 8.1894 14 1 0.3934 -2.9886 8.7035 15 6 2.4238 -3.3144 8.0813 16 1 2.1903 -4.3343 7.7753 17 6 2.9541 -3.2414 9.5413 18 6 2.6615 -1.7730 9.9219 19 7 1.5719 -1.3056 9.0455 20 6 1.0297 -0.0482 9.0342 21 1 0.1700 0.1637 8.4158 22 6 1.5852 0.9542 9.8176 23 7 2.5280 0.6626 10.6883 24 14 0.9944 2.7170 9.6359 25 1 -0.0546 2.9944 10.6497 26 1 2.1361 3.6450 9.8381 27 1 0.4322 2.9130 8.2755 28 6 3.4772 -2.6529 7.1950 29 7 2.1340 -0.8536 3.5738 30 6 1.7016 -0.2428 2.4922 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4425 0.0005 37 1 1.6768 1.9563 -0.8900 38 1 3.0924 -2.2283 0.1390 39 1 3.8926 -3.3426 2.2121 40 1 2.0125 -0.3560 6.5123 41 1 1.3442 -1.0735 5.0217 42 1 -0.1962 -1.2990 6.9998 43 1 0.2814 -2.8595 6.2996 44 1 4.0251 -3.4423 9.5697 45 1 2.4137 -3.9256 10.1958 46 1 3.5517 -1.1642 9.7639 47 1 2.3508 -1.7120 10.9649 48 1 2.9165 1.3630 11.2355 49 1 4.2648 -3.3732 6.9741 50 1 3.9070 -1.8021 7.7238 51 1 1.0809 0.6357 2.5889 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036822342.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:37 Heat of formation + Delta-G solvation = 37.952545 kcal Electronic energy + Delta-G solvation = -31267.258454 eV Core-core repulsion = 27360.513471 eV Total energy + Delta-G solvation = -3906.744983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.96996 -39.59697 -38.09103 -36.12748 -34.92693 -32.81246 -32.40019 -31.52135 -30.61548 -29.14575 -27.50132 -27.49171 -25.65233 -24.53719 -24.03925 -23.40686 -22.33783 -20.81209 -20.24199 -19.89918 -18.46227 -17.29173 -16.99357 -16.22462 -15.73298 -15.54131 -15.23031 -15.05988 -14.79861 -14.47274 -14.34104 -14.10094 -13.85309 -13.79531 -13.40745 -13.26663 -13.19568 -12.80805 -12.70040 -12.49574 -12.22853 -12.05404 -11.58520 -11.48271 -11.40382 -11.32671 -11.20436 -10.99827 -10.93581 -10.76325 -10.59321 -10.13958 -10.06087 -10.04331 -9.94806 -9.81753 -9.59124 -9.55432 -9.14316 -8.73701 -8.51448 -8.03747 -6.75999 -5.69029 -2.99201 0.55772 1.05546 2.82939 3.29784 3.41404 3.47317 3.49032 3.78613 4.07029 4.32791 4.41538 4.52907 4.66123 4.70457 4.79691 4.91921 5.01191 5.19360 5.27879 5.28526 5.39861 5.44460 5.47050 5.48026 5.57995 5.61903 5.65346 5.68660 5.76313 5.84041 5.87133 5.93172 5.96360 6.04716 6.09295 6.18946 6.22798 6.36465 6.37354 6.45320 6.54940 6.62140 6.77999 6.85058 6.92016 7.03969 7.13125 7.60497 7.61567 7.66440 7.85626 7.89155 8.29170 8.41978 9.24940 9.87682 10.56240 11.43821 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011274 B = 0.003637 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.976711 B = 7697.370246 C = 9463.129621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.053 4.053 3 C -0.147 4.147 4 C -0.112 4.112 5 C -0.082 4.082 6 C -0.110 4.110 7 C 0.083 3.917 8 C 0.564 3.436 9 O -0.551 6.551 10 N -0.575 5.575 11 C 0.084 3.916 12 C -0.128 4.128 13 C 0.170 3.830 14 H 0.015 0.985 15 C -0.114 4.114 16 H 0.074 0.926 17 C -0.143 4.143 18 C 0.175 3.825 19 N -0.593 5.593 20 C -0.221 4.221 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.125 3.875 29 N -0.437 5.437 30 C 0.097 3.903 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.085 0.915 41 H 0.132 0.868 42 H 0.072 0.928 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.040 0.960 48 H 0.251 0.749 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.752 -3.713 -21.067 21.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 C -0.204 4.204 4 C -0.114 4.114 5 C -0.108 4.108 6 C -0.131 4.131 7 C -0.055 4.055 8 C 0.350 3.650 9 O -0.430 6.430 10 N -0.304 5.304 11 C -0.037 4.037 12 C -0.168 4.168 13 C 0.062 3.938 14 H 0.032 0.968 15 C -0.135 4.135 16 H 0.093 0.907 17 C -0.182 4.182 18 C 0.050 3.950 19 N -0.319 5.319 20 C -0.349 4.349 21 H 0.096 0.904 22 C -0.202 4.202 23 N -0.566 5.566 24 Si 0.733 3.267 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.003 3.997 29 N -0.148 5.148 30 C -0.062 4.062 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.157 0.843 39 H 0.165 0.835 40 H 0.103 0.897 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.079 0.921 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.095 0.905 50 H 0.099 0.901 51 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.483 -3.650 -20.100 20.483 hybrid contribution -0.122 0.693 -0.587 0.916 sum -1.605 -2.957 -20.687 20.959 Atomic orbital electron populations 1.21886 0.93797 1.02278 1.02456 1.20115 0.96293 0.96203 0.94598 1.21887 1.01395 0.94719 1.02448 1.21092 0.97681 0.96079 0.96591 1.21503 0.95891 0.94465 0.98892 1.22085 0.98799 1.00673 0.91562 1.21313 0.96556 0.93517 0.94077 1.17864 0.81855 0.82396 0.82865 1.90727 1.35636 1.30147 1.86527 1.47936 1.31712 1.46025 1.04717 1.22903 0.84407 0.92574 1.03835 1.21619 0.98815 0.99780 0.96556 1.20289 0.93268 0.89556 0.90694 0.96769 1.22536 0.97095 0.98240 0.95615 0.90723 1.23044 0.99757 1.00527 0.94836 1.21247 0.91902 0.87693 0.94114 1.44319 1.40655 1.07779 1.39153 1.18943 1.09419 0.84298 1.22233 0.90396 1.24769 0.98745 0.97796 0.98889 1.69967 1.30069 1.31215 1.25352 0.86239 0.77448 0.85336 0.77651 1.21870 1.21802 1.20586 1.21493 0.95310 0.99779 0.83105 1.67806 1.08441 1.07412 1.31143 1.22833 0.97599 0.98614 0.87124 0.92004 0.92413 0.92023 0.90147 0.92010 0.92411 0.92014 0.84349 0.83538 0.89720 0.85176 0.90901 0.93389 0.92076 0.92267 0.93431 0.94198 0.93885 0.90453 0.90123 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.01 37.16 0.33 -0.54 16 2 C -0.05 -0.34 3.11 -91.77 -0.29 -0.63 16 3 C -0.15 -0.91 9.01 37.16 0.33 -0.58 16 4 C -0.11 -1.01 4.80 -104.36 -0.50 -1.51 16 5 C -0.08 -0.75 9.80 -39.31 -0.39 -1.14 16 6 C -0.11 -1.33 9.63 -39.05 -0.38 -1.71 16 7 C 0.08 1.24 6.58 -83.01 -0.55 0.69 16 8 C 0.56 10.13 7.64 -12.18 -0.09 10.03 16 9 O -0.55 -10.88 15.83 5.36 0.08 -10.79 16 10 N -0.58 -10.67 2.94 -174.27 -0.51 -11.18 16 11 C 0.08 1.55 5.81 -3.66 -0.02 1.53 16 12 C -0.13 -2.38 5.20 -27.64 -0.14 -2.52 16 13 C 0.17 3.50 2.89 -68.37 -0.20 3.30 16 14 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 15 C -0.11 -2.13 3.78 -88.91 -0.34 -2.47 16 16 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 17 C -0.14 -2.71 6.32 -24.61 -0.16 -2.87 16 18 C 0.17 4.18 4.63 -2.75 -0.01 4.17 16 19 N -0.59 -14.49 3.08 -164.50 -0.51 -15.00 16 20 C -0.22 -5.86 8.89 -15.06 -0.13 -5.99 16 21 H 0.08 2.00 6.80 -52.48 -0.36 1.64 16 22 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 23 N -0.92 -26.59 10.44 55.49 0.58 -26.01 16 24 Si 0.90 21.75 29.56 -169.99 -5.03 16.73 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 28 C 0.13 2.39 5.43 -4.16 -0.02 2.37 16 29 N -0.44 -6.20 6.20 -9.80 -0.06 -6.26 16 30 C 0.10 1.06 9.90 -17.56 -0.17 0.89 16 31 H 0.06 0.38 7.41 -51.93 -0.38 0.00 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.44 7.92 -51.93 -0.41 0.02 16 35 H 0.06 0.40 7.41 -51.93 -0.38 0.02 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.14 0.87 8.00 -52.49 -0.42 0.45 16 39 H 0.15 1.69 7.67 -52.48 -0.40 1.28 16 40 H 0.08 1.82 7.39 -51.93 -0.38 1.44 16 41 H 0.13 2.18 4.09 -79.24 -0.32 1.86 16 42 H 0.07 1.37 7.07 -51.93 -0.37 1.00 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.06 7.97 -51.93 -0.41 0.64 16 45 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 46 H 0.05 1.26 6.85 -51.93 -0.36 0.90 16 47 H 0.04 1.06 7.67 -51.93 -0.40 0.66 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 50 H 0.08 1.72 6.73 -51.93 -0.35 1.37 16 51 H 0.16 1.42 7.12 -52.49 -0.37 1.05 16 LS Contribution 387.85 15.07 5.84 5.84 Total: -1.00 -31.19 387.85 -10.61 -41.80 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.21 Total: 2.09 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -2.81 Total: 2.78 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.50 Total: -58.46 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.19 -10.61 -41.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036822342.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.755 kcal (2) G-P(sol) polarization free energy of solvation -31.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds