Wall clock time and date at job start Wed Apr 1 2020 02:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47166 * 2 1 4 4 C 1.38677 * 120.41285 * 90.00151 * 3 2 1 5 5 C 1.38635 * 118.41726 * 180.02562 * 4 3 2 6 6 C 1.38226 * 119.15873 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.61507 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46869 * 124.99887 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72354 * 8 7 6 11 11 C 1.46533 * 120.97645 * 0.28297 * 10 8 7 12 12 C 1.51787 * 110.13349 * 233.76981 * 11 10 8 13 13 C 1.49526 * 115.07221 * 318.39704 * 12 11 10 14 14 H 1.08996 * 105.91978 * 156.44978 * 13 12 11 15 15 C 1.52669 * 116.96536 * 40.04055 * 13 12 11 16 16 H 1.09001 * 112.03132 * 82.85274 * 15 13 12 17 17 C 1.56118 * 101.71521 * 202.84539 * 15 13 12 18 18 C 1.55105 * 101.08135 * 37.84915 * 17 15 13 19 19 N 1.46258 * 114.17574 * 272.08643 * 13 12 11 20 20 C 1.36934 * 125.96061 * 315.57181 * 19 13 12 21 21 H 1.07998 * 120.00375 * 359.97438 * 20 19 13 22 22 C 1.38820 * 119.99960 * 180.02562 * 20 19 13 23 23 N 1.31617 * 119.99742 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00146 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47337 * 59.99489 * 24 22 20 26 26 H 1.48496 * 109.47292 * 179.97438 * 24 22 20 27 27 H 1.48509 * 109.47195 * 299.99555 * 24 22 20 28 28 C 1.46699 * 120.97726 * 179.97438 * 10 8 7 29 29 N 1.31854 * 120.76526 * 0.25519 * 6 5 4 30 30 C 1.31882 * 121.72815 * 359.47482 * 29 6 5 31 31 H 1.09001 * 109.47089 * 299.99799 * 1 2 3 32 32 H 1.09009 * 109.46908 * 59.99824 * 1 2 3 33 33 H 1.08997 * 109.47016 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47089 * 240.00201 * 2 1 3 35 35 H 1.08996 * 109.47257 * 120.00196 * 2 1 3 36 36 H 1.07995 * 120.79247 * 0.04338 * 4 3 2 37 37 H 1.08001 * 120.41725 * 180.02562 * 5 4 3 38 38 H 1.09004 * 109.47210 * 5.00180 * 7 6 5 39 39 H 1.08994 * 109.47551 * 244.99832 * 7 6 5 40 40 H 1.09000 * 109.35879 * 353.96529 * 11 10 8 41 41 H 1.08996 * 109.36039 * 113.56401 * 11 10 8 42 42 H 1.08999 * 108.36659 * 79.84127 * 12 11 10 43 43 H 1.08997 * 108.36575 * 197.12729 * 12 11 10 44 44 H 1.09005 * 111.10029 * 279.89749 * 17 15 13 45 45 H 1.08999 * 111.13618 * 155.81618 * 17 15 13 46 46 H 1.08999 * 110.34645 * 204.08408 * 18 17 15 47 47 H 1.08991 * 110.44245 * 81.84526 * 18 17 15 48 48 H 0.96993 * 120.00246 * 180.02562 * 23 22 20 49 49 H 1.08999 * 109.52629 * 241.07544 * 28 10 8 50 50 H 1.08996 * 109.52258 * 1.28618 * 28 10 8 51 51 H 1.07998 * 119.62047 * 180.26937 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2664 2.0827 1.1960 5 6 2.7277 3.3891 1.1477 6 6 2.9370 3.9844 -0.0821 7 6 3.4378 5.4043 -0.1466 8 6 4.6903 5.4577 -0.9829 9 8 5.1326 4.4428 -1.4782 10 7 5.3158 6.6343 -1.1854 11 6 4.8000 7.8735 -0.5977 12 6 4.6100 8.9240 -1.6767 13 6 5.7057 8.9950 -2.6918 14 1 5.2610 9.4419 -3.5809 15 6 6.2925 7.6695 -3.1709 16 1 5.6911 7.2173 -3.9596 17 6 7.6994 8.1122 -3.6827 18 6 8.0772 9.1836 -2.6267 19 7 6.8099 9.8792 -2.3205 20 6 6.6902 11.1332 -1.7834 21 1 5.7113 11.5506 -1.5992 22 6 7.8271 11.8683 -1.4767 23 7 9.0201 11.3598 -1.7016 24 14 7.6639 13.5790 -0.7447 25 1 6.9304 13.4982 0.5440 26 1 9.0153 14.1479 -0.5097 27 1 6.9162 14.4510 -1.6860 28 6 6.5366 6.7109 -1.9952 29 7 2.6984 3.3262 -1.1994 30 6 2.2640 2.0810 -1.1916 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.0937 1.5920 2.1424 37 1 2.9211 3.9348 2.0594 38 1 3.6581 5.7580 0.8606 39 1 2.6739 6.0390 -0.5956 40 1 3.8431 7.6738 -0.1155 41 1 5.5068 8.2425 0.1454 42 1 3.6740 8.7178 -2.1958 43 1 4.5270 9.8988 -1.1962 44 1 7.6348 8.5491 -4.6792 45 1 8.4032 7.2801 -3.6665 46 1 8.8035 9.8835 -3.0400 47 1 8.4760 8.7100 -1.7297 48 1 9.8145 11.8732 -1.4870 49 1 7.3576 7.0827 -1.3823 50 1 6.7842 5.7199 -2.3755 51 1 2.0838 1.5726 -2.1272 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036825039.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:06 Heat of formation + Delta-G solvation = 24.825686 kcal Electronic energy + Delta-G solvation = -30225.426829 eV Core-core repulsion = 26318.112623 eV Total energy + Delta-G solvation = -3907.314206 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.69354 -39.83982 -38.12531 -35.25384 -35.02770 -32.89490 -32.40315 -31.74234 -31.53613 -29.40206 -28.26941 -27.33185 -25.20219 -24.22112 -23.93229 -23.22560 -22.55041 -21.35383 -20.11486 -19.56245 -18.08609 -17.21139 -16.71666 -16.58726 -16.22572 -15.68104 -15.36396 -15.22781 -14.91857 -14.45531 -14.21830 -14.14307 -13.92115 -13.79282 -13.46679 -13.27265 -12.98443 -12.93051 -12.73855 -12.50884 -12.22534 -12.09926 -11.92229 -11.68911 -11.62530 -11.39377 -11.27673 -11.17599 -10.98091 -10.74676 -10.51522 -10.17607 -10.06518 -9.91468 -9.88321 -9.63206 -9.60166 -9.50414 -9.37231 -8.89489 -8.63308 -8.17020 -6.81053 -5.68023 -3.06934 0.93784 1.18808 2.89210 3.24192 3.38105 3.42797 3.44210 3.71573 4.10210 4.44791 4.46671 4.49892 4.62366 4.72580 4.82477 4.97775 5.02895 5.09566 5.14912 5.25096 5.28317 5.30016 5.33934 5.43993 5.49596 5.52006 5.53634 5.58458 5.61664 5.67986 5.77639 5.82438 5.87124 5.95451 5.97937 6.10111 6.16839 6.26707 6.33676 6.36152 6.45651 6.56087 6.63509 6.71740 6.79643 6.97169 7.02131 7.51299 7.61982 7.75686 7.85454 7.96916 8.33385 8.46421 9.20042 9.82598 10.49826 11.37856 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025774 B = 0.002210 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.100851 B =12668.266438 C =13228.756839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.142 4.142 4 C -0.076 4.076 5 C -0.165 4.165 6 C 0.143 3.857 7 C -0.092 4.092 8 C 0.521 3.479 9 O -0.534 6.534 10 N -0.605 5.605 11 C 0.116 3.884 12 C -0.136 4.136 13 C 0.172 3.828 14 H 0.008 0.992 15 C -0.106 4.106 16 H 0.076 0.924 17 C -0.143 4.143 18 C 0.157 3.843 19 N -0.593 5.593 20 C -0.221 4.221 21 H 0.077 0.923 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.912 3.088 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.123 3.877 29 N -0.452 5.452 30 C 0.107 3.893 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.014 0.986 48 H 0.252 0.748 49 H 0.076 0.924 50 H 0.083 0.917 51 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.832 -18.357 5.279 24.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.144 4.144 4 C -0.102 4.102 5 C -0.184 4.184 6 C 0.005 3.995 7 C -0.133 4.133 8 C 0.308 3.692 9 O -0.410 6.410 10 N -0.338 5.338 11 C -0.006 4.006 12 C -0.176 4.176 13 C 0.064 3.936 14 H 0.025 0.975 15 C -0.126 4.126 16 H 0.094 0.906 17 C -0.183 4.183 18 C 0.032 3.968 19 N -0.318 5.318 20 C -0.349 4.349 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.212 1.212 28 C 0.001 3.999 29 N -0.159 5.159 30 C -0.051 4.051 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.032 0.968 48 H 0.063 0.937 49 H 0.094 0.906 50 H 0.101 0.899 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.304 -18.266 4.285 23.593 hybrid contribution -0.230 0.682 1.310 1.495 sum -14.534 -17.584 5.595 23.490 Atomic orbital electron populations 1.21759 0.94607 1.01809 1.02262 1.20453 0.96148 0.91967 1.03148 1.20906 1.01388 0.97724 0.94384 1.21383 0.96552 0.94159 0.98061 1.21919 1.01789 0.96050 0.98683 1.20589 0.95110 0.95175 0.88662 1.20644 0.97074 0.93427 1.02117 1.20103 0.84765 0.83126 0.81221 1.90691 1.66375 1.33686 1.50276 1.47971 1.27509 1.07088 1.51261 1.21313 0.98910 0.84135 0.96289 1.21234 0.98961 0.99487 0.97877 1.19418 0.89601 0.90000 0.94546 0.97472 1.22407 0.98150 0.95317 0.96684 0.90567 1.23293 0.94831 0.99647 1.00482 1.21906 0.89774 0.91897 0.93208 1.44475 1.00099 1.13021 1.74192 1.18918 0.92723 0.89489 1.33807 0.90536 1.24765 0.95280 0.98706 1.01793 1.69835 0.96681 1.36885 1.53422 0.86202 0.76582 0.84054 0.78923 1.21288 1.21663 1.21228 1.21744 0.85886 1.00083 0.92161 1.67454 1.09140 1.08570 1.30769 1.22615 0.94725 0.90457 0.97338 0.92637 0.92440 0.92254 0.90674 0.90946 0.85058 0.84820 0.87509 0.87098 0.90845 0.91080 0.93122 0.89948 0.91993 0.92092 0.88436 0.96791 0.93715 0.90598 0.89882 0.83126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 37.16 0.37 -0.47 16 2 C -0.08 -0.52 6.09 -27.88 -0.17 -0.69 16 3 C -0.14 -1.34 5.15 -104.48 -0.54 -1.88 16 4 C -0.08 -0.69 9.86 -39.27 -0.39 -1.08 16 5 C -0.16 -1.68 9.71 -39.44 -0.38 -2.06 16 6 C 0.14 1.83 5.76 -82.59 -0.48 1.35 16 7 C -0.09 -1.09 4.46 -29.03 -0.13 -1.22 16 8 C 0.52 8.32 7.64 -10.98 -0.08 8.24 16 9 O -0.53 -10.41 14.77 5.55 0.08 -10.33 16 10 N -0.61 -9.74 2.94 -173.84 -0.51 -10.25 16 11 C 0.12 1.72 6.39 -4.64 -0.03 1.69 16 12 C -0.14 -2.30 5.62 -29.06 -0.16 -2.46 16 13 C 0.17 3.46 2.63 -69.95 -0.18 3.27 16 14 H 0.01 0.16 8.06 -51.93 -0.42 -0.25 16 15 C -0.11 -1.92 3.70 -88.78 -0.33 -2.25 16 16 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.14 -2.73 6.46 -23.95 -0.15 -2.89 16 18 C 0.16 3.69 5.35 -2.23 -0.01 3.68 16 19 N -0.59 -14.34 3.32 -165.69 -0.55 -14.88 16 20 C -0.22 -5.82 9.59 -15.06 -0.14 -5.96 16 21 H 0.08 1.93 7.02 -52.49 -0.37 1.56 16 22 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 23 N -0.92 -26.16 10.18 55.49 0.56 -25.59 16 24 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 28 C 0.12 2.17 5.57 -3.60 -0.02 2.15 16 29 N -0.45 -6.51 9.24 -9.48 -0.09 -6.59 16 30 C 0.11 1.24 10.86 -17.55 -0.19 1.05 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 1.01 7.95 -52.49 -0.42 0.60 16 38 H 0.11 0.96 7.67 -51.93 -0.40 0.56 16 39 H 0.11 1.16 7.71 -51.93 -0.40 0.76 16 40 H 0.07 0.82 5.94 -51.93 -0.31 0.51 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.49 6.62 -51.93 -0.34 1.15 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.06 1.04 7.98 -51.93 -0.41 0.63 16 46 H 0.10 2.61 6.09 -51.93 -0.32 2.29 16 47 H 0.01 0.35 7.10 -51.93 -0.37 -0.02 16 48 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.08 1.44 6.50 -51.93 -0.34 1.11 16 50 H 0.08 1.49 7.00 -51.93 -0.36 1.13 16 51 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 394.82 15.07 5.95 5.95 Total: -1.00 -32.70 394.82 -10.93 -43.64 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -8.24 Total: 1.50 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -3.12 Total: 0.12 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.58 Total: -57.32 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.70 -10.93 -43.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036825039.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.463 kcal (2) G-P(sol) polarization free energy of solvation -32.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds