Wall clock time and date at job start Wed Apr 1 2020 01:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38231 * 120.41827 * 2 1 4 4 N 1.31853 * 120.76090 * 179.97438 * 3 2 1 5 5 C 1.31890 * 121.72591 * 359.97438 * 4 3 2 6 6 C 1.38176 * 120.76286 * 359.73292 * 5 4 3 7 7 C 1.38626 * 120.41803 * 179.97438 * 2 1 3 8 8 C 1.50701 * 120.78978 * 0.02562 * 7 2 1 9 9 C 1.50696 * 109.47500 * 84.99712 * 8 7 2 10 10 O 1.21284 * 119.99630 * 359.97438 * 9 8 7 11 11 N 1.34771 * 120.00532 * 180.02562 * 9 8 7 12 12 C 1.48192 * 127.79767 * 359.97341 * 11 9 8 13 13 C 1.54502 * 104.63236 * 140.70360 * 12 11 9 14 14 C 1.53834 * 104.78708 * 23.80696 * 13 12 11 15 15 C 1.48253 * 127.80520 * 179.97438 * 11 9 8 16 16 C 1.52489 * 110.21504 * 118.76467 * 14 13 12 17 17 C 1.53131 * 109.59807 * 61.99292 * 16 14 13 18 18 C 1.53183 * 109.29297 * 60.49644 * 17 16 14 19 19 N 1.46938 * 108.89760 * 304.93416 * 18 17 16 20 20 C 1.36935 * 120.68201 * 234.03776 * 19 18 17 21 21 H 1.08003 * 119.99836 * 152.58465 * 20 19 18 22 22 C 1.38806 * 120.00208 * 332.59766 * 20 19 18 23 23 N 1.31620 * 120.00502 * 159.34121 * 22 20 19 24 24 Si 1.86805 * 119.99957 * 339.33388 * 22 20 19 25 25 H 1.48504 * 109.46928 * 93.13168 * 24 22 20 26 26 H 1.48501 * 109.47318 * 213.13167 * 24 22 20 27 27 H 1.48496 * 109.47231 * 333.13728 * 24 22 20 28 28 C 1.47032 * 118.63155 * 54.02168 * 19 18 17 29 29 H 1.09005 * 109.47095 * 270.02023 * 1 2 3 30 30 H 1.09001 * 109.47226 * 30.01520 * 1 2 3 31 31 H 1.08996 * 109.47337 * 150.01768 * 1 2 3 32 32 H 1.07998 * 119.61703 * 359.97438 * 3 2 1 33 33 H 1.07999 * 119.61408 * 180.02562 * 5 4 3 34 34 H 1.08008 * 120.41544 * 180.26787 * 6 5 4 35 35 H 1.09007 * 109.46648 * 324.99635 * 8 7 2 36 36 H 1.08996 * 109.47073 * 205.00316 * 8 7 2 37 37 H 1.09001 * 110.40384 * 21.91659 * 12 11 9 38 38 H 1.09002 * 110.40409 * 259.49498 * 12 11 9 39 39 H 1.08998 * 110.37539 * 264.98464 * 13 12 11 40 40 H 1.09003 * 110.46954 * 142.68262 * 13 12 11 41 41 H 1.09001 * 110.42534 * 100.37800 * 15 11 9 42 42 H 1.08999 * 110.42453 * 337.90343 * 15 11 9 43 43 H 1.09003 * 109.44763 * 301.95607 * 16 14 13 44 44 H 1.09003 * 109.43028 * 182.01918 * 16 14 13 45 45 H 1.08999 * 109.50725 * 300.55040 * 17 16 14 46 46 H 1.09003 * 109.53257 * 180.45759 * 17 16 14 47 47 H 1.08992 * 109.56629 * 185.10974 * 18 17 16 48 48 H 1.09004 * 109.56718 * 64.75668 * 18 17 16 49 49 H 0.97002 * 120.00640 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.58589 * 67.01330 * 28 19 18 51 51 H 1.09008 * 109.58199 * 187.42099 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5254 1.1999 0.0005 5 6 4.2257 0.0823 0.0015 6 6 3.5947 -1.1470 0.0076 7 6 2.2089 -1.1954 0.0005 8 6 1.4831 -2.5162 0.0005 9 6 1.1331 -2.8971 -1.4148 10 8 1.4421 -2.1676 -2.3332 11 7 0.4757 -4.0478 -1.6602 12 6 0.0174 -5.0590 -0.6786 13 6 -1.3663 -5.5085 -1.1985 14 6 -1.3392 -5.1990 -2.7051 15 6 0.0478 -4.5878 -2.9728 16 6 -1.5134 -6.4825 -3.5099 17 6 -2.8763 -7.1054 -3.1945 18 6 -3.9843 -6.1195 -3.5777 19 7 -3.7422 -4.8420 -2.8931 20 6 -4.7160 -4.2679 -2.1204 21 1 -4.4428 -3.6211 -1.2997 22 6 -6.0543 -4.5172 -2.3916 23 7 -6.9620 -4.3256 -1.4579 24 14 -6.5673 -5.1246 -4.0821 25 1 -6.6163 -6.6088 -4.0809 26 1 -7.9101 -4.5852 -4.4155 27 1 -5.5831 -4.6628 -5.0937 28 6 -2.4327 -4.1932 -3.0547 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6675 2.1277 -0.0004 33 1 5.3047 0.1285 0.0023 34 1 4.1737 -2.0588 0.0128 35 1 0.5701 -2.4289 0.5897 36 1 2.1241 -3.2830 0.4353 37 1 -0.0752 -4.6128 0.3116 38 1 0.7064 -5.9032 -0.6529 39 1 -2.1582 -4.9416 -0.7089 40 1 -1.5072 -6.5766 -1.0329 41 1 0.7426 -5.3556 -3.3131 42 1 -0.0251 -3.7866 -3.7083 43 1 -0.7233 -7.1859 -3.2469 44 1 -1.4564 -6.2538 -4.5741 45 1 -2.9380 -7.3258 -2.1288 46 1 -2.9964 -8.0270 -3.7641 47 1 -4.9509 -6.5199 -3.2722 48 1 -3.9765 -5.9628 -4.6564 49 1 -7.8972 -4.4996 -1.6476 50 1 -2.3119 -3.8662 -4.0875 51 1 -2.3659 -3.3340 -2.3872 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040205083.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:36 Heat of formation + Delta-G solvation = 24.185886 kcal Electronic energy + Delta-G solvation = -30999.187047 eV Core-core repulsion = 27091.845097 eV Total energy + Delta-G solvation = -3907.341950 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -40.79806 -40.08020 -38.54211 -36.11158 -34.48264 -33.20453 -32.55941 -31.28715 -30.90584 -29.51612 -29.07966 -27.29326 -25.80803 -25.32347 -23.34872 -22.88736 -22.14324 -21.80358 -21.14383 -19.37400 -18.20483 -17.11705 -16.99422 -16.78052 -16.56016 -15.80345 -15.41843 -15.31031 -15.20729 -14.48351 -14.33144 -14.08865 -13.91487 -13.67457 -13.50601 -13.23567 -13.00701 -13.00564 -12.83322 -12.78718 -12.49940 -12.30242 -12.22191 -12.17195 -11.94877 -11.52676 -11.51999 -11.48065 -10.86942 -10.73195 -10.58339 -10.45000 -10.11830 -10.03590 -9.86997 -9.69441 -9.58353 -9.53826 -9.45324 -8.99479 -8.76396 -8.59216 -7.00588 -5.98839 -3.34354 1.01703 1.07805 2.58110 2.92074 3.28893 3.46552 3.49406 3.67823 4.27485 4.36552 4.43415 4.49944 4.52307 4.72623 4.78151 4.81301 4.85474 5.02110 5.08269 5.12626 5.16506 5.22631 5.29722 5.30584 5.41185 5.46510 5.49954 5.52970 5.55130 5.66325 5.69633 5.76140 5.84831 5.90722 5.95374 5.99034 6.01245 6.04754 6.20320 6.20912 6.31114 6.35987 6.48076 6.53602 6.59124 6.61264 6.66006 6.73976 6.90861 7.53728 7.85481 7.91630 8.11848 8.27944 8.89910 9.68509 10.06584 11.17072 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016252 B = 0.002898 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.442569 B = 9660.965655 C =10680.141024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.116 4.116 3 C 0.097 3.903 4 N -0.485 5.485 5 C 0.088 3.912 6 C -0.158 4.158 7 C -0.023 4.023 8 C -0.102 4.102 9 C 0.537 3.463 10 O -0.535 6.535 11 N -0.620 5.620 12 C 0.097 3.903 13 C -0.115 4.115 14 C -0.087 4.087 15 C 0.116 3.884 16 C -0.095 4.095 17 C -0.135 4.135 18 C 0.124 3.876 19 N -0.602 5.602 20 C -0.257 4.257 21 H 0.084 0.916 22 C 0.024 3.976 23 N -0.908 5.908 24 Si 0.882 3.118 25 H -0.289 1.289 26 H -0.304 1.304 27 H -0.271 1.271 28 C 0.166 3.834 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.155 0.845 33 H 0.153 0.847 34 H 0.131 0.869 35 H 0.109 0.891 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.071 0.929 48 H 0.023 0.977 49 H 0.262 0.738 50 H 0.021 0.979 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.102 -0.763 4.318 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.118 4.118 3 C -0.060 4.060 4 N -0.193 5.193 5 C -0.068 4.068 6 C -0.177 4.177 7 C -0.031 4.031 8 C -0.142 4.142 9 C 0.326 3.674 10 O -0.412 6.412 11 N -0.354 5.354 12 C -0.025 4.025 13 C -0.153 4.153 14 C -0.090 4.090 15 C -0.007 4.007 16 C -0.133 4.133 17 C -0.174 4.174 18 C -0.001 4.001 19 N -0.326 5.326 20 C -0.385 4.385 21 H 0.102 0.898 22 C -0.175 4.175 23 N -0.551 5.551 24 Si 0.713 3.287 25 H -0.217 1.217 26 H -0.233 1.233 27 H -0.196 1.196 28 C 0.040 3.960 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.149 0.851 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.041 0.959 49 H 0.072 0.928 50 H 0.039 0.961 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.586 0.572 3.906 19.980 hybrid contribution -0.907 -1.364 -0.965 1.901 sum 18.679 -0.792 2.941 18.926 Atomic orbital electron populations 1.20784 0.89961 1.03899 1.02566 1.20799 0.97705 0.93518 0.99778 1.22631 0.89857 0.97357 0.96122 1.67631 1.08380 1.31443 1.11848 1.22633 1.00171 0.87624 0.96399 1.21958 0.94281 0.99737 1.01761 1.19563 0.93485 0.93768 0.96290 1.20676 1.02485 0.95388 0.95646 1.19885 0.77411 0.79491 0.90646 1.90744 1.53725 1.50380 1.46352 1.49007 1.56386 1.20226 1.09751 1.22575 0.96429 0.90855 0.92690 1.22522 0.95568 1.02173 0.95056 1.21624 0.94515 0.97196 0.95635 1.22380 0.94647 0.98025 0.85605 1.21359 0.97408 0.95246 0.99273 1.22050 0.95528 0.98085 1.01777 1.21331 0.97358 0.86481 0.94950 1.44339 1.11542 1.19394 1.57286 1.18858 0.84971 1.27360 1.07356 0.89831 1.25256 0.95668 0.99159 0.97371 1.69827 1.01521 1.51815 1.31980 0.86963 0.77068 0.77440 0.87219 1.21698 1.23267 1.19610 1.20853 0.84237 0.92941 0.97972 0.90586 0.90777 0.91149 0.82813 0.82933 0.85061 0.87243 0.87773 0.90563 0.91313 0.89373 0.90465 0.91421 0.90007 0.92749 0.92376 0.91452 0.92794 0.91053 0.95888 0.92778 0.96068 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.30 36.01 0.33 -0.88 16 2 C -0.12 -1.36 5.90 -104.48 -0.62 -1.97 16 3 C 0.10 1.14 10.86 -17.55 -0.19 0.95 16 4 N -0.48 -6.09 10.36 -13.25 -0.14 -6.23 16 5 C 0.09 0.95 11.18 -17.55 -0.20 0.75 16 6 C -0.16 -1.63 9.80 -39.44 -0.39 -2.02 16 7 C -0.02 -0.26 4.41 -104.32 -0.46 -0.72 16 8 C -0.10 -1.01 4.17 -29.04 -0.12 -1.14 16 9 C 0.54 7.20 7.24 -10.99 -0.08 7.12 16 10 O -0.54 -9.30 16.30 5.55 0.09 -9.21 16 11 N -0.62 -7.74 3.32 -169.41 -0.56 -8.30 16 12 C 0.10 1.00 6.92 -2.32 -0.02 0.98 16 13 C -0.12 -1.53 5.58 -25.51 -0.14 -1.67 16 14 C -0.09 -1.26 0.68 -154.05 -0.11 -1.36 16 15 C 0.12 1.54 6.13 -2.60 -0.02 1.52 16 16 C -0.09 -1.30 4.44 -26.93 -0.12 -1.42 16 17 C -0.14 -2.15 5.87 -26.57 -0.16 -2.31 16 18 C 0.12 2.56 4.19 -3.71 -0.02 2.55 16 19 N -0.60 -13.44 2.56 -172.56 -0.44 -13.88 16 20 C -0.26 -6.85 10.04 -15.06 -0.15 -7.00 16 21 H 0.08 2.38 8.06 -52.48 -0.42 1.95 16 22 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 23 N -0.91 -27.13 13.97 55.49 0.78 -26.36 16 24 Si 0.88 22.01 24.36 -169.99 -4.14 17.87 16 25 H -0.29 -6.94 6.63 56.52 0.37 -6.56 16 26 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 27 H -0.27 -6.70 6.63 56.52 0.37 -6.32 16 28 C 0.17 3.12 4.86 -3.94 -0.02 3.10 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.74 8.09 -51.93 -0.42 0.31 16 31 H 0.07 0.86 6.35 -51.93 -0.33 0.53 16 32 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 35 H 0.11 0.96 6.91 -51.92 -0.36 0.60 16 36 H 0.10 0.76 8.07 -51.93 -0.42 0.34 16 37 H 0.08 0.66 7.31 -51.93 -0.38 0.28 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.44 7.65 -51.93 -0.40 1.04 16 40 H 0.08 0.97 6.51 -51.93 -0.34 0.63 16 41 H 0.07 0.79 7.83 -51.93 -0.41 0.38 16 42 H 0.08 1.22 7.55 -51.93 -0.39 0.83 16 43 H 0.05 0.62 8.13 -51.93 -0.42 0.20 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 1.09 6.61 -51.93 -0.34 0.75 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.63 4.47 -51.93 -0.23 1.40 16 48 H 0.02 0.48 7.10 -51.93 -0.37 0.11 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.02 0.41 8.09 -51.93 -0.42 -0.01 16 51 H 0.06 1.21 7.92 -51.92 -0.41 0.80 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -33.31 389.74 -9.30 -42.61 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -8.21 Total: 0.54 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.55 Total: -2.92 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.37 Total: -54.76 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.31 -9.30 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040205083.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.795 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds