Wall clock time and date at job start Wed Apr 1 2020 02:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47204 * 2 1 4 4 C 1.38610 * 119.55330 * 125.01903 * 3 2 1 5 5 C 1.38578 * 119.35306 * 179.97438 * 4 3 2 6 6 C 1.38628 * 118.49053 * 359.75442 * 5 4 3 7 7 C 1.39269 * 119.05778 * 0.46806 * 6 5 4 8 8 C 1.48176 * 119.71911 * 179.79876 * 7 6 5 9 9 O 1.21515 * 119.99909 * 359.72578 * 8 7 6 10 10 N 1.34779 * 119.99801 * 179.72789 * 8 7 6 11 11 C 1.47484 * 125.66306 * 0.02562 * 10 8 7 12 12 C 1.55010 * 104.99714 * 204.07135 * 11 10 8 13 13 C 1.54538 * 101.52374 * 323.56242 * 12 11 10 14 14 C 1.47436 * 125.80288 * 180.02562 * 10 8 7 15 15 C 1.52272 * 110.16031 * 276.40225 * 13 12 11 16 16 C 1.53322 * 109.42114 * 297.16746 * 15 13 12 17 17 N 1.46926 * 108.70332 * 306.49433 * 16 15 13 18 18 C 1.36936 * 120.55761 * 234.20458 * 17 16 15 19 19 H 1.08004 * 120.00448 * 27.94959 * 18 17 16 20 20 C 1.38815 * 119.99995 * 207.94676 * 18 17 16 21 21 N 1.31620 * 120.00110 * 17.45051 * 20 18 17 22 22 Si 1.86797 * 120.00303 * 197.44673 * 20 18 17 23 23 H 1.48505 * 109.47160 * 59.99983 * 22 20 18 24 24 H 1.48498 * 109.47462 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47096 * 300.00550 * 22 20 18 26 26 C 1.46929 * 118.87901 * 54.22930 * 17 16 15 27 27 C 1.52278 * 110.15727 * 153.27980 * 13 12 11 28 28 N 1.31493 * 119.55180 * 304.99930 * 3 2 1 29 29 H 1.08994 * 109.47382 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47252 * 300.00192 * 1 2 3 31 31 H 1.08996 * 109.46911 * 59.99653 * 1 2 3 32 32 H 1.09002 * 109.47252 * 239.99808 * 2 1 3 33 33 H 1.09000 * 109.47116 * 119.99888 * 2 1 3 34 34 H 1.08004 * 120.31691 * 0.02562 * 4 3 2 35 35 H 1.08007 * 120.75180 * 179.97438 * 5 4 3 36 36 H 1.08000 * 120.46834 * 180.26848 * 6 5 4 37 37 H 1.09005 * 110.35312 * 85.16075 * 11 10 8 38 38 H 1.09004 * 110.35716 * 322.98334 * 11 10 8 39 39 H 1.09004 * 111.01526 * 81.61911 * 12 11 10 40 40 H 1.08998 * 111.02212 * 205.50179 * 12 11 10 41 41 H 1.08996 * 109.88656 * 59.08818 * 14 10 8 42 42 H 1.09001 * 110.05270 * 297.93103 * 14 10 8 43 43 H 1.09002 * 109.48336 * 57.15162 * 15 13 12 44 44 H 1.09002 * 109.48336 * 177.18339 * 15 13 12 45 45 H 1.08992 * 109.59795 * 186.72504 * 16 15 13 46 46 H 1.08998 * 109.59628 * 66.25444 * 16 15 13 47 47 H 0.96994 * 120.00339 * 179.97438 * 21 20 18 48 48 H 1.09004 * 109.60062 * 185.99612 * 26 17 16 49 49 H 1.08999 * 109.73182 * 65.60286 * 26 17 16 50 50 H 1.09000 * 109.47920 * 182.80601 * 27 13 12 51 51 H 1.08998 * 109.47969 * 302.82794 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.9126 1.8347 0.9875 5 6 3.3723 3.1420 0.9832 6 6 2.9354 3.9934 -0.0198 7 6 2.0467 3.5106 -0.9773 8 6 1.5667 4.4092 -2.0533 9 8 1.9446 5.5634 -2.0947 10 7 0.7109 3.9464 -2.9860 11 6 0.1734 2.5747 -3.0547 12 6 -0.2119 2.3689 -4.5420 13 6 -0.7354 3.7724 -4.9223 14 6 0.1547 4.7244 -4.1080 15 6 -2.1942 3.9176 -4.5109 16 6 -3.0451 2.9022 -5.2826 17 7 -2.7830 3.0631 -6.7193 18 6 -3.8142 3.2701 -7.5962 19 1 -4.7198 3.7535 -7.2605 20 6 -3.6956 2.8588 -8.9167 21 7 -2.7718 1.9836 -9.2530 22 14 -4.8470 3.5473 -10.2165 23 1 -4.6907 5.0226 -10.2849 24 1 -4.5161 2.9524 -11.5363 25 1 -6.2499 3.2142 -9.8616 26 6 -1.3959 2.9975 -7.1993 27 6 -0.5559 4.0125 -6.4153 28 7 1.6300 2.2509 -0.9370 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2376 1.1448 1.7522 35 1 4.0583 3.4886 1.7420 36 1 3.2767 5.0173 -0.0562 37 1 -0.7066 2.4800 -2.4184 38 1 0.9349 1.8537 -2.7571 39 1 0.6605 2.1023 -5.1386 40 1 -0.9963 1.6188 -4.6425 41 1 0.9631 5.1025 -4.7338 42 1 -0.4402 5.5551 -3.7283 43 1 -2.2903 3.7336 -3.4408 44 1 -2.5374 4.9269 -4.7385 45 1 -4.1011 3.0819 -5.0812 46 1 -2.7784 1.8916 -4.9733 47 1 -2.6891 1.6959 -10.1756 48 1 -1.3646 3.2400 -8.2616 49 1 -0.9988 1.9948 -7.0414 50 1 -0.8821 5.0227 -6.6627 51 1 0.4953 3.8953 -6.6785 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040730149.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:26 Heat of formation + Delta-G solvation = 25.127768 kcal Electronic energy + Delta-G solvation = -30914.369366 eV Core-core repulsion = 27007.068260 eV Total energy + Delta-G solvation = -3907.301107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.02756 -39.86394 -38.32548 -35.84730 -34.48335 -33.38738 -32.54549 -30.88238 -30.23662 -29.98592 -29.22295 -27.19107 -25.24195 -24.61686 -23.66072 -22.82593 -22.11245 -21.73445 -20.84111 -19.77361 -18.26211 -17.39299 -16.79596 -16.44313 -16.10797 -15.89275 -15.62631 -14.87190 -14.83009 -14.75191 -14.26713 -13.96772 -13.85064 -13.61161 -13.47679 -13.32107 -13.06437 -12.74267 -12.67181 -12.60939 -12.24131 -12.17659 -12.15114 -11.68228 -11.45925 -11.36384 -11.20838 -11.02043 -10.72554 -10.65856 -10.42122 -10.37882 -10.23569 -10.19942 -10.06169 -9.80229 -9.49307 -9.40161 -9.36275 -9.30807 -8.49793 -8.40748 -6.63474 -5.76906 -3.18463 0.41048 0.89424 2.64018 2.93802 3.39848 3.45721 3.47339 3.62368 3.77024 4.24515 4.42024 4.51834 4.64034 4.74580 4.86154 4.94158 4.97468 5.03922 5.07479 5.14822 5.20686 5.40808 5.46301 5.48632 5.54338 5.61174 5.66023 5.73114 5.76540 5.80550 5.83597 5.91803 6.00293 6.06636 6.11959 6.16621 6.20591 6.27065 6.34166 6.39013 6.46708 6.58213 6.68244 6.72987 6.79689 6.88829 7.01450 7.39686 7.46174 7.59419 7.69317 7.81788 8.12980 8.47803 9.24073 9.87789 10.44316 11.31399 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020446 B = 0.002603 C = 0.002417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.165126 B =10753.509420 C =11580.794221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C 0.127 3.873 4 C -0.152 4.152 5 C -0.079 4.079 6 C -0.120 4.120 7 C 0.093 3.907 8 C 0.578 3.422 9 O -0.543 6.543 10 N -0.591 5.591 11 C 0.104 3.896 12 C -0.127 4.127 13 C -0.056 4.056 14 C 0.114 3.886 15 C -0.119 4.119 16 C 0.147 3.853 17 N -0.591 5.591 18 C -0.252 4.252 19 H 0.064 0.936 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.174 3.826 27 C -0.126 4.126 28 N -0.448 5.448 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.138 0.862 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.065 0.935 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.020 0.980 47 H 0.254 0.746 48 H 0.087 0.913 49 H 0.020 0.980 50 H 0.056 0.944 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.003 -3.002 21.233 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.013 4.013 4 C -0.173 4.173 5 C -0.105 4.105 6 C -0.141 4.141 7 C -0.045 4.045 8 C 0.364 3.636 9 O -0.421 6.421 10 N -0.322 5.322 11 C -0.018 4.018 12 C -0.165 4.165 13 C -0.057 4.057 14 C -0.008 4.008 15 C -0.158 4.158 16 C 0.021 3.979 17 N -0.313 5.313 18 C -0.381 4.381 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.547 5.547 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.209 1.209 26 C 0.048 3.952 27 C -0.166 4.166 28 N -0.160 5.160 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.089 0.911 40 H 0.110 0.890 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.105 0.895 49 H 0.038 0.962 50 H 0.075 0.925 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.673 -2.700 20.417 23.673 hybrid contribution 0.092 0.685 0.006 0.691 sum 11.765 -2.015 20.423 23.655 Atomic orbital electron populations 1.21710 0.93722 1.02091 1.02917 1.20516 0.97368 0.89833 1.03331 1.21446 0.93245 0.96384 0.90229 1.22206 0.98240 0.96921 0.99887 1.21605 0.98107 0.93218 0.97530 1.22095 0.96401 1.01846 0.93781 1.21125 0.96454 0.91060 0.95902 1.17518 0.78993 0.86171 0.80875 1.90776 1.58553 1.17572 1.75178 1.48474 1.43267 1.13948 1.26523 1.22759 0.99323 0.82799 0.96961 1.22952 1.01580 0.97767 0.94196 1.20975 0.94836 0.93810 0.96029 1.22257 0.96878 0.94667 0.86977 1.21923 0.94022 1.01353 0.98495 1.20940 0.96702 0.94638 0.85653 1.44027 1.02526 1.83799 1.00992 1.19141 0.96712 1.31617 0.90670 0.91842 1.25013 0.98655 0.97156 0.98784 1.70016 1.36227 1.30958 1.17526 0.86397 0.80555 0.78865 0.81118 1.21075 1.21680 1.20940 1.20772 0.82422 0.93629 0.98354 1.22117 0.99624 1.02010 0.92849 1.67661 1.22878 1.02604 1.22839 0.92071 0.92990 0.91164 0.89653 0.90303 0.84418 0.84108 0.83530 0.91674 0.88131 0.91072 0.89024 0.91398 0.91495 0.93138 0.92178 0.92922 0.96210 0.93628 0.89521 0.96203 0.92481 0.93131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.77 37.16 0.36 -0.74 16 2 C -0.07 -0.49 6.33 -27.88 -0.18 -0.67 16 3 C 0.13 1.15 6.18 -82.60 -0.51 0.64 16 4 C -0.15 -1.11 9.72 -39.32 -0.38 -1.49 16 5 C -0.08 -0.60 10.17 -39.31 -0.40 -1.00 16 6 C -0.12 -1.27 9.63 -39.05 -0.38 -1.64 16 7 C 0.09 1.20 6.72 -83.01 -0.56 0.64 16 8 C 0.58 9.03 7.85 -12.18 -0.10 8.93 16 9 O -0.54 -9.82 16.66 5.35 0.09 -9.73 16 10 N -0.59 -8.95 3.34 -171.46 -0.57 -9.52 16 11 C 0.10 1.40 5.61 -2.44 -0.01 1.39 16 12 C -0.13 -1.91 4.92 -24.86 -0.12 -2.03 16 13 C -0.06 -0.91 0.55 -154.09 -0.09 -1.00 16 14 C 0.11 1.80 6.07 -3.18 -0.02 1.78 16 15 C -0.12 -2.03 4.74 -26.94 -0.13 -2.15 16 16 C 0.15 2.97 6.19 -3.64 -0.02 2.94 16 17 N -0.59 -14.38 2.98 -172.16 -0.51 -14.89 16 18 C -0.25 -6.82 9.58 -15.06 -0.14 -6.96 16 19 H 0.06 1.70 7.89 -52.48 -0.41 1.28 16 20 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 21 N -0.90 -25.86 11.19 55.49 0.62 -25.24 16 22 Si 0.90 21.62 29.59 -169.99 -5.03 16.59 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.17 4.01 5.03 -3.64 -0.02 3.99 16 27 C -0.13 -2.36 4.72 -26.94 -0.13 -2.49 16 28 N -0.45 -5.19 6.11 -6.06 -0.04 -5.23 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.64 7.94 -51.93 -0.41 0.23 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.36 7.87 -51.93 -0.41 -0.05 16 34 H 0.14 0.59 7.95 -52.48 -0.42 0.18 16 35 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.15 1.49 7.64 -52.49 -0.40 1.09 16 37 H 0.07 0.87 7.74 -51.93 -0.40 0.47 16 38 H 0.10 1.30 5.88 -51.93 -0.31 1.00 16 39 H 0.07 1.08 8.01 -51.93 -0.42 0.66 16 40 H 0.09 1.45 6.08 -51.93 -0.32 1.14 16 41 H 0.07 1.09 7.78 -51.93 -0.40 0.69 16 42 H 0.07 1.07 7.83 -51.93 -0.41 0.67 16 43 H 0.05 0.78 7.47 -51.93 -0.39 0.39 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 46 H 0.02 0.40 6.47 -51.93 -0.34 0.06 16 47 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 48 H 0.09 2.28 6.02 -51.93 -0.31 1.97 16 49 H 0.02 0.47 7.56 -51.93 -0.39 0.08 16 50 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 51 H 0.05 0.87 8.11 -51.93 -0.42 0.45 16 LS Contribution 393.12 15.07 5.92 5.92 Total: -1.00 -31.34 393.12 -10.66 -41.99 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -8.24 Total: -0.01 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -2.90 Total: 0.12 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: -0.50 Total: -54.88 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.34 -10.66 -41.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040730149.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.120 kcal (2) G-P(sol) polarization free energy of solvation -31.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds